Os04g0129500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, Sec23/Sec24-type domain containing protein.
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Os04g0129500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, Sec23/Sec24-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.12 | 0.226 | 10.7 | 0.91 | 0.349 | 1.1 | -0.129 | 1.21 | 0.238 | 2.73 | 0.322 | 1441 | -- | -- |
| 23.82 | 0.227 | 10.7 | 1.03 | 0.345 | 0.807 | -0.113 | -- | 0.243 | 2.66 | 0.33 | 1437 | -- | -- |
| 23.17 | 0.224 | 10.7 | 0.913 | 0.353 | 1.1 | -- | 1.22 | 0.24 | 2.63 | 0.3269 | 1438 | -- | -- |
| 23.87 | 0.228 | 10.7 | 1.04 | 0.342 | 0.835 | -- | -- | 0.252 | 2.6 | 0.3598 | 1438 | -- | -- |
| 24.54 | 0.231 | 10.7 | 0.934 | -- | 0.913 | -- | 0.14 | 0.255 | -- | 0.39 | 1673 | -- | -- |
| 31.59 | 0.263 | 10.7 | 0.832 | 0.341 | -- | -0.23 | -- | 0.148 | 2.7 | -- | -- | -- | -- |
| 31.77 | 0.264 | 10.7 | 0.838 | 0.34 | -- | -- | -- | 0.15 | 2.6 | -- | -- | -- | -- |
| 24.08 | 0.229 | 10.7 | 1.05 | -- | 0.977 | -- | -- | 0.263 | -- | 0.3617 | 3182 | -- | -- |
| 47.91 | 0.322 | 10.8 | -- | 0.392 | 0.377 | -- | -- | 0.0879 | 2.15 | 1.182 | 2778 | -- | -- |
| 38.51 | 0.29 | 10.7 | 0.853 | -- | -- | -- | -- | 0.158 | -- | -- | -- | -- | -- |
| 50.28 | 0.332 | 10.8 | -- | 0.356 | -- | -- | -- | 0.0562 | 2.63 | -- | -- | -- | -- |
| 49.07 | 0.326 | 10.7 | -- | -- | 0.646 | -- | -- | 0.186 | -- | 1.2 | 3275 | -- | -- |
| 57.69 | 0.355 | 10.8 | -- | -- | -- | -- | -- | 0.0635 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 2 | 22.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 3 | 22.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 8 | 22.71 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 16 | 22.78 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 18 | 22.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 28 | 22.85 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 61 | 22.93 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 79 | 22.99 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 87 | 23.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 91 | 23.04 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 122 | 23.10 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 129 | 23.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 131 | 23.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 144 | 23.13 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 158 | 23.16 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 182 | 23.18 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 234 | 23.22 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 259 | 23.28 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 278 | 23.32 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 279 | 23.32 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 282 | 23.33 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 314 | 23.39 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 3 |
| 341 | 23.44 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 18 |
| 355 | 23.45 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 357 | 23.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 370 | 23.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 21 |
| 372 | 23.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 22 |
| 383 | 23.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 485 | 23.58 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 525 | 23.63 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 601 | 23.74 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 609 | 23.75 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 13 |
| 670 | 23.83 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 765 | 23.92 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 13 |
| 786 | 23.94 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 804 | 23.95 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 823 | 23.98 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 884 | 24.02 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 950 | 24.07 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 966 | 24.08 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 967 | 24.08 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |