BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0129500 Os04g0129500|AK120404
(1031 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0129500 Zinc finger, Sec23/Sec24-type domain containin... 1778 0.0
AK110126 395 e-109
Os11g0482100 Similar to Protein transport protein Sec24-lik... 294 2e-79
Os04g0412900 Sec23/Sec24 trunk region domain containing pro... 79 2e-14
Os05g0443300 Sec23/Sec24 trunk region domain containing pro... 73 1e-12
>Os04g0129500 Zinc finger, Sec23/Sec24-type domain containing protein
Length = 1031
Score = 1778 bits (4605), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 897/1031 (87%), Positives = 897/1031 (87%)
Query: 1 MQPPMGNDRPPQGVPGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MQPPMGNDRPPQGVPGRP
Sbjct: 1 MQPPMGNDRPPQGVPGRPVSAFVPGAATAAPPPSSFGAASAPRAPFVPPPQAAASPAAPF 60
Query: 61 XXXXXXXXXGYRGPHASPAPLRRWTAPAGPLRRRGTTPAGPFTSAPSSQGPFAAAPQPPS 120
GYRGPHASPAPLRRWTAPAGPLRRRGTTPAGPFTSAPSSQGPFAAAPQPPS
Sbjct: 61 AAAPPAAIAGYRGPHASPAPLRRWTAPAGPLRRRGTTPAGPFTSAPSSQGPFAAAPQPPS 120
Query: 121 QGPFGTAPPPSQGPFGTAPPPSQGPFGTAPPPSQGPFAASVPPSQGPFASAQPPFRPPPS 180
QGPFGTAPPPSQGPFGTAPPPSQGPFGTAPPPSQGPFAASVPPSQGPFASAQPPFRPPPS
Sbjct: 121 QGPFGTAPPPSQGPFGTAPPPSQGPFGTAPPPSQGPFAASVPPSQGPFASAQPPFRPPPS 180
Query: 181 LVQSPTASGMXXXXXXXXXXXXXXXXXXXXXGFYGGPPPANQQFPMSRXXXXXXXXXXXX 240
LVQSPTASGM GFYGGPPPANQQFPMSR
Sbjct: 181 LVQSPTASGMAPPSAYVRPPPPVQSQPPPMQGFYGGPPPANQQFPMSRPTFQQPVQTMPP 240
Query: 241 XXXAGFGNQAAYAXXXXXXXXXLQSLVEDFQSLSVSSAPGSLDPGVDVKGLPRPLDGDEE 300
AGFGNQAAYA LQSLVEDFQSLSVSSAPGSLDPGVDVKGLPRPLDGDEE
Sbjct: 241 PPMAGFGNQAAYATGGPPTGGTLQSLVEDFQSLSVSSAPGSLDPGVDVKGLPRPLDGDEE 300
Query: 301 PTKVLEAYPLNCHPRYFRLTTHAIPASQSLVSRWHLPLGAVVHPLAESPDGEVPVINFGS 360
PTKVLEAYPLNCHPRYFRLTTHAIPASQSLVSRWHLPLGAVVHPLAESPDGEVPVINFGS
Sbjct: 301 PTKVLEAYPLNCHPRYFRLTTHAIPASQSLVSRWHLPLGAVVHPLAESPDGEVPVINFGS 360
Query: 361 AGVIRCRRCRTYINPYATFADAGRKWRCNLCTLLNDVPGEYFCGIDGSGRRYDADQRPEL 420
AGVIRCRRCRTYINPYATFADAGRKWRCNLCTLLNDVPGEYFCGIDGSGRRYDADQRPEL
Sbjct: 361 AGVIRCRRCRTYINPYATFADAGRKWRCNLCTLLNDVPGEYFCGIDGSGRRYDADQRPEL 420
Query: 421 SKGTVEFVAPTEYMVRPPMPPSYFFLIDVSVSAVRSGLLEVVAKTIKSCLDDLPGFPRTQ 480
SKGTVEFVAPTEYMVRPPMPPSYFFLIDVSVSAVRSGLLEVVAKTIKSCLDDLPGFPRTQ
Sbjct: 421 SKGTVEFVAPTEYMVRPPMPPSYFFLIDVSVSAVRSGLLEVVAKTIKSCLDDLPGFPRTQ 480
Query: 481 IGFLTFDSTLHFHNFKSSLSQPQMMXXXXXXXXXXXXXXXXXXXXXXSRHVVDSFLDSLP 540
IGFLTFDSTLHFHNFKSSLSQPQMM SRHVVDSFLDSLP
Sbjct: 481 IGFLTFDSTLHFHNFKSSLSQPQMMVVADLDDVFLPLPDDLLVNLVDSRHVVDSFLDSLP 540
Query: 541 NMFQDNVNVESALGPALKAAFMVMSQIGGKLLVFQSTLPSLGVGRLRLRGDDVRAYGTDK 600
NMFQDNVNVESALGPALKAAFMVMSQIGGKLLVFQSTLPSLGVGRLRLRGDDVRAYGTDK
Sbjct: 541 NMFQDNVNVESALGPALKAAFMVMSQIGGKLLVFQSTLPSLGVGRLRLRGDDVRAYGTDK 600
Query: 601 EHSLRVPEDPFYKQMAAEFTKNQIAVDIFSFSDKYCDIASLGSLAKYTGGQVYHYPSFQA 660
EHSLRVPEDPFYKQMAAEFTKNQIAVDIFSFSDKYCDIASLGSLAKYTGGQVYHYPSFQA
Sbjct: 601 EHSLRVPEDPFYKQMAAEFTKNQIAVDIFSFSDKYCDIASLGSLAKYTGGQVYHYPSFQA 660
Query: 661 VTHGDKLKHELSRDLTRETAWESVMRIRCGKGVRFTTYHGHFMLRSTDLLALPAVDSDKA 720
VTHGDKLKHELSRDLTRETAWESVMRIRCGKGVRFTTYHGHFMLRSTDLLALPAVDSDKA
Sbjct: 661 VTHGDKLKHELSRDLTRETAWESVMRIRCGKGVRFTTYHGHFMLRSTDLLALPAVDSDKA 720
Query: 721 FAMQLSLEETLMTTQTVYFQVALLYTSSSGERRIRVHTAAAPVVTDLGEMYRQADTGAIV 780
FAMQLSLEETLMTTQTVYFQVALLYTSSSGERRIRVHTAAAPVVTDLGEMYRQADTGAIV
Sbjct: 721 FAMQLSLEETLMTTQTVYFQVALLYTSSSGERRIRVHTAAAPVVTDLGEMYRQADTGAIV 780
Query: 781 SLLSRIAVENSLSDKLDSVRQQLQLKLVRSLKEYRNLYVVQHRIGGRLIYPESLRFLPLY 840
SLLSRIAVENSLSDKLDSVRQQLQLKLVRSLKEYRNLYVVQHRIGGRLIYPESLRFLPLY
Sbjct: 781 SLLSRIAVENSLSDKLDSVRQQLQLKLVRSLKEYRNLYVVQHRIGGRLIYPESLRFLPLY 840
Query: 841 ILSICKSLALRGGYADVSLDERCAAGFSMMILPAKKLLNFIYPSLYRVDEVLSMEPDRIG 900
ILSICKSLALRGGYADVSLDERCAAGFSMMILPAKKLLNFIYPSLYRVDEVLSMEPDRIG
Sbjct: 841 ILSICKSLALRGGYADVSLDERCAAGFSMMILPAKKLLNFIYPSLYRVDEVLSMEPDRIG 900
Query: 901 GSLKRLPLTMQCXXXXXXXXXXXXXXXXVWLGRMLPPELVNNILGVSLANFPDLSKVQLR 960
GSLKRLPLTMQC VWLGRMLPPELVNNILGVSLANFPDLSKVQLR
Sbjct: 901 GSLKRLPLTMQCLDTGGLYLLDDGFTFLVWLGRMLPPELVNNILGVSLANFPDLSKVQLR 960
Query: 961 ECDNEYSRNFMKILGTLRERDPSYHQLCRVVRQGEQPREGFLLLSNLVEDQMSGTSSYMD 1020
ECDNEYSRNFMKILGTLRERDPSYHQLCRVVRQGEQPREGFLLLSNLVEDQMSGTSSYMD
Sbjct: 961 ECDNEYSRNFMKILGTLRERDPSYHQLCRVVRQGEQPREGFLLLSNLVEDQMSGTSSYMD 1020
Query: 1021 WILQIHRQTQS 1031
WILQIHRQTQS
Sbjct: 1021 WILQIHRQTQS 1031
>AK110126
Length = 905
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 239/682 (35%), Positives = 364/682 (53%), Gaps = 23/682 (3%)
Query: 314 PRYFRLTTHAIPASQSLVSRWHLPLGAVVHPLAESPDGEVPVINFGSAGVIRCRRCRTYI 373
P+Y R T +A+P + SL+ + LP ++ P A D E V + RCRRCRTYI
Sbjct: 176 PKYVRSTLNAMPTTSSLLKKSKLPFAHIIQPYATLHDAEDDVPVQYDQVIARCRRCRTYI 235
Query: 374 NPYATFADAGRKWRCNLCTLLNDVPGEYFCGIDGSGRRYDADQRPELSKGTVEFVAPTEY 433
NP+A+F D +WRCN+C L NDVP + F D QRPEL+ EFVAP EY
Sbjct: 236 NPFASFLDHSHRWRCNMCNLTNDVP-QSFDWDSAKQASVDRWQRPELNYSVSEFVAPQEY 294
Query: 434 MVRPPMPPSYFFLIDVSVSAVRSGLLEVVAKTIKSCLDDLPGFPR-TQIGFLTFDSTLHF 492
MVR P P Y FL DVS + V SGLL A+ I LD +P R T++GF+ DS+LH+
Sbjct: 295 MVRAPQPLIYLFLFDVSYAGVTSGLLATAARCILESLDRIPNTDRRTRLGFMAVDSSLHY 354
Query: 493 HNF---KSSLSQPQMMXXXXXXXXXXXXXXXXXXXXXXSRHVVDSFLDSLPNMFQDNVNV 549
+ S + P+M+ R ++++L L MF + +
Sbjct: 355 FSIPRDGSENNDPKMLVVSDLDEPFLPTPEDLLVNLTECRANIETYLTKLQGMFANTQDN 414
Query: 550 ESALGPALKAAFMVMSQIGGKLLVFQSTLPSLGVGRLRLRGDDVRAYGTDKEHSLRVPED 609
SA+G AL+A ++S +GGK++ ++LP++G G+L +R +D + GT KE++L ++
Sbjct: 415 GSAMGSALRAGHKLISHVGGKVVCLSASLPNIGHGKLAMR-EDKKLLGTSKENALLQTQN 473
Query: 610 PFYKQMAAEFTKNQIAVDIFSFSDKYCDIASLGSLAKYTGGQVYHYPSFQAVTHGDKLKH 669
FYK A E +K Q+++D+F FS +Y D ASL +L +YTGGQ Y YP++ A D +K
Sbjct: 474 SFYKSFAVECSKTQVSIDMFLFSAQYQDEASLSNLPRYTGGQTYFYPAWNAARTEDAIKF 533
Query: 670 --ELSRDLTRETAWESVMRIRCGKGVRFTTYHGHFMLRSTDLLALPAVDSDKAFAMQLSL 727
E S L+ E E+V+R+R G+R + ++G+F RS+DL A PA+ D+A+ +++++
Sbjct: 534 ATEFSDYLSSEIGLEAVLRVRTTTGLRPSAFYGNFFNRSSDLCAFPAMPRDQAYVVEIAI 593
Query: 728 EETLMTTQTVYFQVALLYTSSSGERRIRVHTAAAPVVTDLGEMYRQADTGAIVSLLSRIA 787
+E++ T QV +L+T+ +GERRIRV T + P +L E+Y AD AI + A
Sbjct: 594 DESV-TKAFACLQVGVLHTTCNGERRIRVLTLSIPTTQNLAEVYASADQQAITHYFAHKA 652
Query: 788 VENSLSDKLDSVRQQLQLKLVRSLKEYRNLYVVQHRIGGRLIYPESLRFLPLYILSICKS 847
VE +LS LD+ R +Q K++ L+ Y+ + GG L +P +LR LP+ L + K+
Sbjct: 653 VERALSSGLDAARDAVQAKIIELLQTYKKELGGGNMGGGGLQFPANLRGLPMLFLGLMKN 712
Query: 848 LALRGGYADVSLDERCAAGFSMMILPAKKLLNFIYPSLYRVDEVLSMEPDRIG------G 901
L LR A + D R AA + LP L+ +IYP LY + ++ PD G G
Sbjct: 713 LGLRKS-AQIPTDLRSAALCLLSTLPLPLLMQYIYPRLYSLHDM----PDDAGLPHPETG 767
Query: 902 SLKR---LPLTMQCXXXXXXXXXXXXXXXXVWLGRMLPPELVNNILGVSLANFPDLSKVQ 958
++ L L+ +WLGR P L+ ++ G N K
Sbjct: 768 AIVMPPPLNLSSANLVPYGLYLLDDGQTQFLWLGRDAVPALIADVFGTEDKNQLKQGKTS 827
Query: 959 LRECDNEYSRNFMKILGTLRER 980
+ D+E + ++ R+
Sbjct: 828 VPVIDSEMNERVRAVVEKSRDH 849
>Os11g0482100 Similar to Protein transport protein Sec24-like CEF
Length = 577
Score = 294 bits (752), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 194/586 (33%), Positives = 299/586 (51%), Gaps = 18/586 (3%)
Query: 452 SAVRSGLLEVVAKTIKSCLDDLPGFPRTQIGFLTFDSTLHFHNFKSSLSQPQMMXXXXXX 511
+A+++G I + DLP PRT +G TFDS +HF++ K + QP M+
Sbjct: 1 NAIQTGSTAAACSAISQAISDLPEGPRTMVGIATFDSAIHFYSLKRAQQQPLMLIVPDVQ 60
Query: 512 XXXXXXXXXXXXXXXXSRHVVDSFLDSLPNMFQDNVNVESALGPALKAAFMVMSQIGGKL 571
R ++ L+S+P+MF++N +SA G A+KA F+ M GGKL
Sbjct: 61 DVYTPLQKDLILPVSECRENLEQLLESIPSMFENNRVADSAFGAAMKAGFLAMKSTGGKL 120
Query: 572 LVFQSTLPSLGVGRLRLRGDDVRAYGT--DKE-HSLRVPEDPFYKQMAAEFTKNQIAVDI 628
LVFQS LPSLGVG L R + RA + DKE H L P D K MA EF + Q+ VD+
Sbjct: 121 LVFQSVLPSLGVGSLSAREAEGRANVSTGDKEPHKLLQPVDKTLKTMALEFAEYQVCVDV 180
Query: 629 FSFSDKYCDIASLGSLAKYTGGQVYHYPSFQAVTHGDKLKHELSRDLTRETAWESVMRIR 688
F + Y DIAS+ + TGG+VY+Y F A + KL ++L +++R +E+VMR+R
Sbjct: 181 FLTTQSYVDIASISVVPNTTGGRVYYYYPFSARSDPAKLFNDLRWNISRPQGFEAVMRVR 240
Query: 689 CGKGVRFTTYHGHFMLRSTDLLALPAVDSDKAFAMQLSLEETLMTTQTVYFQVALLYTSS 748
C +G++ Y G+F R + LP++DSDK + ++ L FQ ALLYT+
Sbjct: 241 CSQGLQVQDYFGNFCKRVPTDIDLPSIDSDKTIMVTFKHDDKLQENSECGFQCALLYTTV 300
Query: 749 SGERRIRVHTAAAPVVTDLGEMYRQADTGAIVSLLSRIAVENSLSDKLDSVRQQLQLKLV 808
G+RRIRV + P L ++R AD + + A + L +R+++ +
Sbjct: 301 YGQRRIRVMNLSLPCTNMLSNLFRYADLETQFTCFLKQAANGIPTSTLLHLREEVTNTCI 360
Query: 809 RSLKEYRNLYVVQHRIGGRLIYPESLRFLPLYILSICKSLALRGGYADVSLDERCAAGFS 868
L+ YR Y G+LI PE+L+ LPLY L++ KS+ LR + LD+R
Sbjct: 361 NILQSYRK-YCASVSSSGQLILPEALKLLPLYTLALIKSIGLRN---EGRLDDRSYWISL 416
Query: 869 MMILPAKKLLNFIYPSLYRVDEVLSMEPDRIGGSLKRLPLTMQCXXXXX--XXXXXXXXX 926
+ + + ++P L + ++ S D SL PL +
Sbjct: 417 VSSVSVLLAVPLVFPRLIPIHDLTSRGDDE---SLIPSPLMLNSENIREDGVYLLENGED 473
Query: 927 XXVWLGRMLPPELVNNILGV-SLANFPDLSKVQLRECDNEYSRNFMKILGTLRERDPSYH 985
+++G ++ P ++ I GV SLA P S+ L + DNE SR +++ +R + SY
Sbjct: 474 GLIYVGNVVEPTILEQIFGVSSLAALP--SQAVLEQFDNELSRKVNEVINEIRRQRCSYL 531
Query: 986 QLCRVVRQGEQPREGFLLLSNLVEDQMSGTSSYMDWILQIHRQTQS 1031
+L R+ R+GE G S L ED+ G SY+++++ +HRQ QS
Sbjct: 532 RL-RLCRRGEP--SGDFFRSFLTEDKAPGGLSYVEFLVHVHRQIQS 574
>Os04g0412900 Sec23/Sec24 trunk region domain containing protein
Length = 739
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 129/286 (45%), Gaps = 36/286 (12%)
Query: 569 GKLLVFQSTLPSLGVGRLRLRGD----DVRAYGTDKEHSLRVPEDPFYKQMAAEFTKNQI 624
++ F S P+ G G++ R D + G+D H+ + FY +AA + +
Sbjct: 270 ARIFTFLSGPPNYGPGQIETRSDVDHNAAKMLGSD--HTFISEQTNFYTNLAASAVQAGV 327
Query: 625 AVDIFSFSDKYCDIASLGSLAKYTGGQVYHYPSFQAVTHGDKLKHELSRDLTRETAWESV 684
VD+F+ +++Y D++SL L+ +GG +Y Y S T L ++ + L+R A+ V
Sbjct: 328 CVDLFAITNEYTDLSSLKVLSVESGGSLYMYSS----TDESTLPQDIYKMLSRPYAFGCV 383
Query: 685 MRIRCGKGVRFTTYHGHFM----------LRSTDLLALPAVD----SDKAFA-------M 723
+R+R + +GHF + D A D D F+ +
Sbjct: 384 LRLRTSSEFKIADSYGHFFPDPQYMHVQHINCCDSFATYVYDFEFQKDSQFSRKSSPPIL 443
Query: 724 QLSLEETLMTTQ---TVYFQVALLYTSSSGERRIRVHTAAAPVVTDLGEMYRQADTGAIV 780
Q++ + T + Q + ++ + + +RR+RV T + ++ ++Y D ++
Sbjct: 444 QIAFKYTTIVQQGDTSDDVSNSVSRSKFTLQRRLRVRTIQYNITANIWDLYDFVDPDVVL 503
Query: 781 SLLSRIAVENSLSDKLDSVRQQLQLKLVRSLKEYRNLYVVQHRIGG 826
++L + SLSD L++ R L+ LV + +Y Y V R GG
Sbjct: 504 TILVHQVILASLSDVLEA-RIWLRDWLVNFIAQYNKAYKVV-RSGG 547
>Os05g0443300 Sec23/Sec24 trunk region domain containing protein
Length = 761
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 142/348 (40%), Gaps = 35/348 (10%)
Query: 569 GKLLVFQSTLPSLGVGRLRLR--GDDVRAYGTDKEHSLRVPEDPFYKQMAAEFTKNQIAV 626
++ F S P G G+L R G+ + G D + +L + PFYK +AA + + V
Sbjct: 287 ARVFAFLSGAPDYGDGQLDTRRYGEQYASKGEDPDLALLPEQIPFYKDLAAVAVQAGVCV 346
Query: 627 DIFSFSDKYCDIASLGSLAKYTGGQVYHYPSFQAVTHGDKLKHELSRDLTRETAWESVMR 686
DIF+ +D+Y D+ASL L+ +GG ++ Y + T L ++ R L+R A+ V+R
Sbjct: 347 DIFAITDEYTDLASLKFLSIESGGSLFLYTN----TDDSTLPQDIYRLLSRPYAFGCVLR 402
Query: 687 IRCGKGVRFTTYHGHFM--LRSTDLLALPAVDSDKAFAMQLSL---EETLMTTQTVYFQV 741
+R +GHF + + + DS +A + E T Q+
Sbjct: 403 LRTSSDFEPGNSYGHFFPDPQYEHVQHIICCDSFATYAYDFNFSHPEGFSRHTDPAVVQI 462
Query: 742 ALLYT-------SSSGE------------RRIRVHTAAAPVVTDLGEMYRQADTGAIVSL 782
A Y+ +S E RR+R+ T ++ E+Y D ++ +
Sbjct: 463 AFQYSVIEPVKHTSENETQSSTSNMFCLKRRLRIRTLQYRPAKNINEIYDSVDPETLLHI 522
Query: 783 LSR----IAVENSLSDKLDSVRQQLQLKLVRSLKEYR-NLYVVQHRIGGRLIYPESLRFL 837
L I+++ + + V L L + R + R + + + + + L+ L
Sbjct: 523 LVHKVILISLDKGVKEGRSLVHDWLSLLIARYNQALRSDARIPESHVDVDFLQCPQLQML 582
Query: 838 PLYILSICKSLALRGGYADVSLDERCAAGFSMMILPAKKLLNFIYPSL 885
P + ++ ++ L+ + D R L L IYP L
Sbjct: 583 PQLVFALLRNPLLQLHEEGIHPDYRIYLQCLFSALEPSSLAKAIYPVL 630
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 35,807,284
Number of extensions: 1669159
Number of successful extensions: 18151
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 18314
Number of HSP's successfully gapped: 5
Length of query: 1031
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 920
Effective length of database: 11,240,047
Effective search space: 10340843240
Effective search space used: 10340843240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)