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Os05g0443300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Sec23/Sec24 trunk region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0157) R2 : 0.00458
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0479 (0.0331) R2dN8 : 0.00591 R2N8 : 0.00458
σ : 0.296
deviance : 40.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
21.37 0.217 10.9 -0.0187 0.534 -0.286 -0.548 0.106 -0.107 4.07 19.6 679 -- --
21.39 0.215 10.9 -0.00152 0.53 -0.301 -0.55 -- -0.103 4.05 19.5 723 -- --
22.17 0.219 10.9 -0.009 0.531 -0.28 -- 0.117 -0.107 4.21 19.5 730 -- --
22.21 0.219 10.9 -0.0027 0.529 -0.312 -- -- -0.103 4.27 19.5 730 -- --
36.41 0.281 10.9 -0.0217 -- -0.378 -- -0.011 -0.103 -- 19.7 1011 -- --
23.35 0.227 10.9 0.103 0.531 -- -0.569 -- -0.0504 3.8 -- -- -- --
24.28 0.231 10.9 0.111 0.53 -- -- -- -0.0472 3.96 -- -- -- --
36.35 0.281 10.9 -0.0254 -- -0.413 -- -- -0.105 -- 19.4 1049 -- --
22.21 0.219 10.9 -- 0.529 -0.312 -- -- -0.103 4.26 19.5 730 -- --
39.66 0.294 10.9 0.133 -- -- -- -- -0.0331 -- -- -- -- --
24.6 0.232 10.9 -- 0.533 -- -- -- -0.0597 3.96 -- -- -- --
35.76 0.279 10.9 -- -- -0.679 -- -- -0.0868 -- 17.8 1080 -- --
40.13 0.296 10.9 -- -- -- -- -- -0.0479 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.47 temperature 10 720 > th dose dependent rect. 1 6
2 20.58 humidity 60 14400 > th dose independent rect. 20 10
3 20.59 radiation 1 1440 > th dose independent rect. 9 4
7 20.66 radiation 1 1440 < th dose independent rect. 9 4
8 20.66 radiation 1 1440 < th dose dependent rect. 9 4
9 20.68 wind 1 43200 < th dose dependent rect. 7 1
12 20.71 wind 1 43200 < th dose independent rect. 20 3
34 20.80 wind 1 43200 > th dose independent rect. 6 3
44 20.84 radiation 1 1440 < th dose independent rect. 13 1
46 20.84 wind 1 43200 < th dose independent rect. 18 5
47 20.84 humidity 90 14400 < th dose dependent rect. 6 1
48 20.84 radiation 1 1440 < th dose dependent rect. 13 1
53 20.86 radiation 20 14400 < th dose independent rect. 19 11
56 20.87 wind 1 43200 > th dose independent rect. 20 3
68 20.91 radiation 1 1440 > th dose independent rect. 11 1
69 20.91 wind 1 43200 < th dose independent rect. 6 4
70 20.91 wind 1 43200 < th dose independent rect. 18 9
71 20.91 temperature 20 720 > th dose independent rect. 19 18
73 20.91 atmosphere 1015 10 < th dose dependent rect. 12 20
76 20.92 atmosphere 995 43200 < th dose dependent rect. 12 15
77 20.92 atmosphere 995 43200 < th dose dependent rect. 11 18
81 20.93 wind 1 43200 < th dose dependent rect. 18 6
84 20.94 atmosphere 995 43200 > th dose independent rect. 21 19
89 20.94 atmosphere 995 43200 > th dose independent rect. 17 22
92 20.94 atmosphere 995 43200 < th dose independent rect. 8 22
100 20.94 temperature 10 720 > th dose dependent rect. 1 12
105 20.95 atmosphere 995 43200 < th dose independent rect. 9 20
112 20.95 atmosphere 995 43200 < th dose independent rect. 15 23
115 20.95 wind 1 43200 < th dose dependent rect. 20 4
120 20.96 atmosphere 995 43200 < th dose independent rect. 21 20
132 20.97 atmosphere 995 43200 > th dose independent no NA NA
133 20.97 atmosphere 995 43200 < th dose independent no NA NA
135 20.97 radiation 20 14400 < th dose independent rect. 21 9
136 20.97 temperature 20 720 > th dose independent rect. 21 16
146 20.97 atmosphere 995 43200 > th dose independent rect. 8 22
160 20.97 atmosphere 995 43200 < th dose dependent sin 16 NA
161 20.97 temperature 30 270 < th dose dependent rect. 7 4
163 20.97 atmosphere 995 43200 < th dose dependent rect. 13 12
168 20.98 atmosphere 995 43200 < th dose independent rect. 10 18
180 20.99 wind 1 43200 < th dose independent rect. 6 2
182 20.99 atmosphere 995 43200 < th dose independent rect. 24 14
200 21.00 temperature 20 720 > th dose independent rect. 1 12
202 21.00 atmosphere 995 43200 > th dose independent rect. 24 14
216 21.01 humidity 90 43200 < th dose independent rect. 23 2
218 21.01 wind 1 43200 < th dose independent rect. 5 6
219 21.01 atmosphere 995 43200 < th dose independent rect. 1 12
242 21.02 humidity 60 14400 > th dose independent rect. 20 7
244 21.02 temperature 20 720 > th dose independent rect. 19 12
259 21.02 humidity 90 14400 < th dose dependent rect. 4 3
263 21.03 atmosphere 995 43200 > th dose independent sin 6 NA
264 21.03 atmosphere 995 43200 < th dose independent sin 6 NA
268 21.03 radiation 1 4320 < th dose independent rect. 19 10
278 21.04 wind 7 720 < th dose independent rect. 13 6
279 21.04 temperature 20 720 > th dose independent rect. 1 6
280 21.04 atmosphere 995 43200 > th dose independent rect. 2 10
293 21.04 temperature 30 270 < th dose dependent rect. 6 6
296 21.05 wind 7 1440 < th dose independent rect. 14 1
311 21.05 atmosphere 995 43200 < th dose dependent sin 8 NA
318 21.06 radiation 1 1440 > th dose independent rect. 9 1
335 21.06 atmosphere 995 43200 < th dose dependent rect. 14 10
336 21.06 temperature 10 720 > th dose dependent rect. 23 14
337 21.07 temperature 20 720 > th dose independent sin 7 NA
339 21.07 wind 7 1440 > th dose independent rect. 14 1
340 21.07 atmosphere 995 43200 > th dose independent rect. 3 8
348 21.07 humidity 50 14400 > th dose dependent rect. 4 3
357 21.08 wind 1 43200 > th dose independent rect. 5 6
359 21.08 wind 1 43200 > th dose independent rect. 18 9
363 21.08 radiation 30 14400 < th dose independent rect. 17 11
373 21.08 wind 1 43200 < th dose dependent rect. 6 4
382 21.09 temperature 20 720 > th dose independent rect. 21 10
393 21.09 radiation 10 4320 < th dose dependent rect. 19 10
394 21.09 temperature 10 720 > th dose dependent rect. 21 16
400 21.10 humidity 90 43200 > th dose independent rect. 24 1
408 21.10 humidity 60 14400 > th dose dependent rect. 6 1
411 21.10 humidity 90 14400 < th dose dependent rect. 2 6
412 21.10 atmosphere 995 43200 < th dose dependent rect. 22 13
429 21.11 temperature 20 30 > th dose independent rect. 12 19
434 21.11 wind 1 4320 > th dose dependent rect. 13 1
447 21.12 atmosphere 995 43200 < th dose independent rect. 5 3
450 21.12 atmosphere 995 43200 < th dose independent rect. 4 5
463 21.12 temperature 10 720 > th dose dependent sin 7 NA
469 21.12 atmosphere 995 43200 < th dose dependent rect. 2 7
472 21.12 humidity 90 14400 < th dose dependent rect. 21 11
483 21.13 atmosphere 995 43200 > th dose independent rect. 4 6
497 21.13 wind 9 4320 < th dose dependent rect. 13 1
503 21.13 atmosphere 995 43200 < th dose dependent rect. 24 10
549 21.15 radiation 1 4320 < th dose independent rect. 21 8
552 21.15 atmosphere 995 43200 > th dose independent rect. 11 15
558 21.15 temperature 20 720 < th dose independent rect. 22 18
585 21.16 atmosphere 995 43200 < th dose dependent rect. 4 4
588 21.16 radiation 10 4320 < th dose dependent rect. 21 8
604 21.17 humidity 90 43200 < th dose independent rect. 20 8
644 21.18 wind 5 1440 > th dose dependent rect. 14 1
661 21.19 radiation 1 90 > th dose independent rect. 7 11
662 21.19 radiation 30 14400 < th dose independent rect. 17 13
697 21.20 radiation 1 270 < th dose independent rect. 21 23
745 21.22 humidity 50 43200 < th dose independent rect. 17 3
753 21.22 wind 1 43200 < th dose independent rect. 4 10
775 21.23 atmosphere 995 43200 > th dose independent rect. 6 2
814 21.24 humidity 50 43200 > th dose independent rect. 17 3
826 21.24 wind 1 43200 < th dose independent rect. 4 15
830 21.24 radiation 1 90 > th dose independent rect. 7 22
831 21.24 humidity 90 43200 > th dose dependent rect. 2 1
853 21.25 temperature 20 720 < th dose independent rect. 22 12
859 21.25 temperature 25 10 < th dose independent rect. 14 18
883 21.26 temperature 30 270 < th dose independent rect. 21 14
905 21.26 humidity 90 43200 > th dose dependent rect. 24 4
915 21.26 wind 1 43200 < th dose dependent rect. 5 14
919 21.27 atmosphere 995 43200 < th dose independent sin 17 NA
929 21.27 temperature 30 90 < th dose independent rect. 8 9
949 21.27 humidity 80 4320 > th dose dependent rect. 8 1
981 21.28 temperature 30 90 < th dose independent rect. 23 13
990 21.28 radiation 10 4320 < th dose dependent rect. 24 5
995 21.28 temperature 30 720 < th dose dependent rect. 23 10
999 21.29 radiation 1 720 < th dose independent sin 14 NA