BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0443300 Os05g0443300|Os05g0443300
(761 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0443300 Sec23/Sec24 trunk region domain containing pro... 1402 0.0
Os04g0412900 Sec23/Sec24 trunk region domain containing pro... 776 0.0
Os04g0129500 Zinc finger, Sec23/Sec24-type domain containin... 83 8e-16
Os11g0482100 Similar to Protein transport protein Sec24-lik... 68 3e-11
>Os05g0443300 Sec23/Sec24 trunk region domain containing protein
Length = 761
Score = 1402 bits (3629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 710/761 (93%), Positives = 710/761 (93%)
Query: 1 MAARATFSRFPVTAEALEACAVQWGIAVTPFAAADERGQAPAAGAGGDRVPRCEHCWAYL 60
MAARATFSRFPVTAEALEACAVQWGIAVTPFAAADERGQAPAAGAGGDRVPRCEHCWAYL
Sbjct: 1 MAARATFSRFPVTAEALEACAVQWGIAVTPFAAADERGQAPAAGAGGDRVPRCEHCWAYL 60
Query: 61 NSHCDMERWGWSCALCGTLNGFDDDALRRLQHPEGWPELTSSFVDLEIPVDGSEGAGDGV 120
NSHCDMERWGWSCALCGTLNGFDDDALRRLQHPEGWPELTSSFVDLEIPVDGSEGAGDGV
Sbjct: 61 NSHCDMERWGWSCALCGTLNGFDDDALRRLQHPEGWPELTSSFVDLEIPVDGSEGAGDGV 120
Query: 121 QARPVYVAAVDLACSEEFLELIKSALLAALEALIPGSLFGLMTFSHKIGLYDVQGPIPVV 180
QARPVYVAAVDLACSEEFLELIKSALLAALEALIPGSLFGLMTFSHKIGLYDVQGPIPVV
Sbjct: 121 QARPVYVAAVDLACSEEFLELIKSALLAALEALIPGSLFGLMTFSHKIGLYDVQGPIPVV 180
Query: 181 KNVFIPPDTEEDGLPVALEDAMPLLSFLAPIDTCKDRIAAALDTLRPTSSWERGAASGQE 240
KNVFIPPDTEEDGLPVALEDAMPLLSFLAPIDTCKDRIAAALDTLRPTSSWERGAASGQE
Sbjct: 181 KNVFIPPDTEEDGLPVALEDAMPLLSFLAPIDTCKDRIAAALDTLRPTSSWERGAASGQE 240
Query: 241 PDTVLLGGRGFGTAMSALTDYLSSEYGTTFALGMPNYIFFLKKIQTARVFAFLSGAPDYG 300
PDTVLLGGRGFGTAMSALTDYLSSEYGTTFALGMPNYIFFLKKIQTARVFAFLSGAPDYG
Sbjct: 241 PDTVLLGGRGFGTAMSALTDYLSSEYGTTFALGMPNYIFFLKKIQTARVFAFLSGAPDYG 300
Query: 301 DGQLDTRRYGEQYASKGEDPDLALLPEQIPFYKDLAAVAVQAGVCVDIFAITDEYTDLAS 360
DGQLDTRRYGEQYASKGEDPDLALLPEQIPFYKDLAAVAVQAGVCVDIFAITDEYTDLAS
Sbjct: 301 DGQLDTRRYGEQYASKGEDPDLALLPEQIPFYKDLAAVAVQAGVCVDIFAITDEYTDLAS 360
Query: 361 LKFLSIESGGSLFLYTNTDDSTLPQDIYRLLSRPYAFGCVLRLRTSSDFEPGNSYGHFFP 420
LKFLSIESGGSLFLYTNTDDSTLPQDIYRLLSRPYAFGCVLRLRTSSDFEPGNSYGHFFP
Sbjct: 361 LKFLSIESGGSLFLYTNTDDSTLPQDIYRLLSRPYAFGCVLRLRTSSDFEPGNSYGHFFP 420
Query: 421 DPQYEHVQHIICCDSFATYAYDFNFSHPEGFSRHTDPAVVQIAFQYSVIEPVKHXXXXXX 480
DPQYEHVQHIICCDSFATYAYDFNFSHPEGFSRHTDPAVVQIAFQYSVIEPVKH
Sbjct: 421 DPQYEHVQHIICCDSFATYAYDFNFSHPEGFSRHTDPAVVQIAFQYSVIEPVKHTSENET 480
Query: 481 XXXXXXMFCLKRRLRIRTLQYRPAKNINEIYDSVDPETXXXXXXXXXXXXXXDKGVKEGR 540
MFCLKRRLRIRTLQYRPAKNINEIYDSVDPET DKGVKEGR
Sbjct: 481 QSSTSNMFCLKRRLRIRTLQYRPAKNINEIYDSVDPETLLHILVHKVILISLDKGVKEGR 540
Query: 541 SLVHDWLSLLIARYNQALRSDARIPESHVDVDFXXXXXXXXXXXXVFALLRNPLLQLHEE 600
SLVHDWLSLLIARYNQALRSDARIPESHVDVDF VFALLRNPLLQLHEE
Sbjct: 541 SLVHDWLSLLIARYNQALRSDARIPESHVDVDFLQCPQLQMLPQLVFALLRNPLLQLHEE 600
Query: 601 GIHPDYRIYLQCLFSALEPSSLAKAIYPVLVSYSSPDKQAFPRHTLSRAALIMSESPIFL 660
GIHPDYRIYLQCLFSALEPSSLAKAIYPVLVSYSSPDKQAFPRHTLSRAALIMSESPIFL
Sbjct: 601 GIHPDYRIYLQCLFSALEPSSLAKAIYPVLVSYSSPDKQAFPRHTLSRAALIMSESPIFL 660
Query: 661 LDAFTNLIVYYXXXXXXXXXXXXXHDCLLRTMVNELKQGRCITPKLTFIHGGREDPALFE 720
LDAFTNLIVYY HDCLLRTMVNELKQGRCITPKLTFIHGGREDPALFE
Sbjct: 661 LDAFTNLIVYYSPSADPSLPFPPPHDCLLRTMVNELKQGRCITPKLTFIHGGREDPALFE 720
Query: 721 RYLIEEQDVDGTGFTSGKGFVSFRESIRHAATDIIETESSI 761
RYLIEEQDVDGTGFTSGKGFVSFRESIRHAATDIIETESSI
Sbjct: 721 RYLIEEQDVDGTGFTSGKGFVSFRESIRHAATDIIETESSI 761
>Os04g0412900 Sec23/Sec24 trunk region domain containing protein
Length = 739
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/753 (54%), Positives = 499/753 (66%), Gaps = 27/753 (3%)
Query: 1 MAARATFSRFPVTAEALEACAVQWGIAVTPFAAADERGQAPAAGAGGDRVPRCEHCWAYL 60
MA RA+ + FP A E+ + WG+AVTPF+AADERG APA GA G +PRC+ C+AY
Sbjct: 1 MAVRASLACFPSDAALQESSGIPWGVAVTPFSAADERGAAPATGAEGHLLPRCDSCYAYF 60
Query: 61 NSHCDMERWGWSCALCGTLNGFDDDALRRLQHPEGW--PELTSSFVDLEIPVDGSEGAGD 118
++ C + RW WSCA+C N DA R G PE+ S+FVDL +P G EG +
Sbjct: 61 STLCPLHRWSWSCAICSADNDLTPDASARYARDGGQDPPEMRSAFVDLLLP--GEEG--E 116
Query: 119 GVQARPVYVAAVDLACSEEFLELIKSALLAALEALIPGSLFGLMTFSHKIGLYDVQGPIP 178
PVYVAA+DL+ SEEFLEL+KSALLAALEA+ PGSLFGL+TFS KIGLYDVQGPIP
Sbjct: 117 AATTTPVYVAAIDLSSSEEFLELVKSALLAALEAIPPGSLFGLLTFSSKIGLYDVQGPIP 176
Query: 179 VVKNVFIPPDTEEDG-LPVALEDAMPLLSFLAPIDTCKDRIAAALDTLRPTSSWERGAAS 237
+VKN FIPPD+ DG L V LED MPL SFLAP+D CKDRIA AL+T++PTSSWE A +
Sbjct: 177 IVKNAFIPPDS--DGTLLVDLEDVMPLRSFLAPVDGCKDRIAEALETIKPTSSWEITATA 234
Query: 238 GQEPDTVLLGGRGFGTAMSALTDYLSSEYGTTFALGMPNYIFFLKKIQTARVFAFLSGAP 297
+ D L RGFG AM A+ +YL +EYG+ F L AR+F FLSG P
Sbjct: 235 SEVQDHALHHARGFGLAMDAVVNYLCTEYGSLFEL--------------ARIFTFLSGPP 280
Query: 298 DYGDGQLDTRRYGEQYASKGEDPDLALLPEQIPFYKDLAAVAVQAGVCVDIFAITDEYTD 357
+YG GQ++TR + A+K D + EQ FY +LAA AVQAGVCVD+FAIT+EYTD
Sbjct: 281 NYGPGQIETRSDVDHNAAKMLGSDHTFISEQTNFYTNLAASAVQAGVCVDLFAITNEYTD 340
Query: 358 LASLKFLSIESGGSLFLYTNTDDSTLPQDIYRLLSRPYAFGCVLRLRTSSDFEPGNSYGH 417
L+SLK LS+ESGGSL++Y++TD+STLPQDIY++LSRPYAFGCVLRLRTSS+F+ +SYGH
Sbjct: 341 LSSLKVLSVESGGSLYMYSSTDESTLPQDIYKMLSRPYAFGCVLRLRTSSEFKIADSYGH 400
Query: 418 FFPDPQYEHVQHIICCDSFATYAYDFNFSHPEGFSRHTDPAVVQIAFQYSVIEPVKHXXX 477
FFPDPQY HVQHI CCDSFATY YDF F FSR + P ++QIAF+Y+ I
Sbjct: 401 FFPDPQYMHVQHINCCDSFATYVYDFEFQKDSQFSRKSSPPILQIAFKYTTIVQQGDTSD 460
Query: 478 XXXXXXXXXMFCLKRRLRIRTLQYRPAKNINEIYDSVDPETXXXXXXXXXXXXXXDKGVK 537
F L+RRLR+RT+QY NI ++YD VDP+ V
Sbjct: 461 DVSNSVSRSKFTLQRRLRVRTIQYNITANIWDLYDFVDPDVVLTILVHQVILASL-SDVL 519
Query: 538 EGRSLVHDWLSLLIARYNQALR--SDARIPESHVDVDFXXXXXXXXXXXXVFALLRNPLL 595
E R + DWL IA+YN+A + S +DVDF VFA L +PLL
Sbjct: 520 EARIWLRDWLVNFIAQYNKAYKVVRSGGTGMSDIDVDFIHCSQLQPLSRLVFAFLLSPLL 579
Query: 596 QLHEEGIHPDYRIYLQCLFSALEPSSLAKAIYPVLVSYSSPDKQAFPRHTLSRAALIMSE 655
QLH +GIHPDYR YLQCLFSALE SSL +AI P L+SYSSPD +A +LSR ++ SE
Sbjct: 580 QLHGQGIHPDYRTYLQCLFSALEASSLRQAICPTLISYSSPDVEAEVHQSLSR-SVFNSE 638
Query: 656 SPIFLLDAFTNLIVYYXXXXXXXXXXXXXHDCLLRTMVNELKQGRCITPKLTFIHGGRED 715
SPIFLLDA+T+L+VYY DCLLR+ ++ LKQ R ITPKL FIHG +D
Sbjct: 639 SPIFLLDAYTDLLVYYSPTVSSTIPFPPPRDCLLRSKIDRLKQERNITPKLVFIHGAHDD 698
Query: 716 PALFERYLIEEQDVDGTGFTSGKGFVSFRESIR 748
FERYLIE+Q VDG+ S GF SF E IR
Sbjct: 699 TTAFERYLIEDQSVDGSLVASATGFRSFLEGIR 731
>Os04g0129500 Zinc finger, Sec23/Sec24-type domain containing protein
Length = 1031
Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 98/433 (22%), Positives = 167/433 (38%), Gaps = 64/433 (14%)
Query: 4 RATFSRFPVTAEALEACAVQWGIAVTPFAAADERGQAPAAGAGGDRVPRCEHCWAYLNSH 63
R T P + + + G V P A + + G+ P G V RC C Y+N +
Sbjct: 318 RLTTHAIPASQSLVSRWHLPLGAVVHPLAESPD-GEVPVINFGSAGVIRCRRCRTYINPY 376
Query: 64 CDMERWG--WSCALCGTLNGFDD------DALRRLQHPEGWPELTSSFVDLEIPVDGSEG 115
G W C LC LN D R + PEL+ V+ P +
Sbjct: 377 ATFADAGRKWRCNLCTLLNDVPGEYFCGIDGSGRRYDADQRPELSKGTVEFVAPTEYMVR 436
Query: 116 AGDGVQARPVYVAAVDLACS---EEFLELIKSALLAALEAL--IPGSLFGLMTFSHKIGL 170
P Y +D++ S LE++ + + L+ L P + G +TF +
Sbjct: 437 P----PMPPSYFFLIDVSVSAVRSGLLEVVAKTIKSCLDDLPGFPRTQIGFLTFDSTLHF 492
Query: 171 YDVQGPIPVVKNVFIPPDTEEDGLPVALEDAMPLLSFLAPIDTCKDRIAAALDTLRPTSS 230
++ + + + + + D ++ LP+ + + L+ +D+ D +
Sbjct: 493 HNFKSSLSQPQMMVVA-DLDDVFLPLPDDLLVNLVDSRHVVDSFLDSLPNMFQ------- 544
Query: 231 WERGAASGQEPDTVLLGGRGFGTAMSALTDYLSSEYGTTFALGMPNYIFFLKKIQTARVF 290
D V SAL L + + +G ++
Sbjct: 545 -----------DNV--------NVESALGPALKAAFMVMSQIG-------------GKLL 572
Query: 291 AFLSGAPDYGDGQLDTRRYGEQYASKGEDPDLALLPEQIPFYKDLAAVAVQAGVCVDIFA 350
F S P G G+L R G+ + G D + +L + PFYK +AA + + VDIF+
Sbjct: 573 VFQSTLPSLGVGRLRLR--GDDVRAYGTDKEHSLRVPEDPFYKQMAAEFTKNQIAVDIFS 630
Query: 351 ITDEYTDLASLKFLSIESGGSLFLYTN----TDDSTLPQDIYRLLSRPYAFGCVLRLRTS 406
+D+Y D+ASL L+ +GG ++ Y + T L ++ R L+R A+ V+R+R
Sbjct: 631 FSDKYCDIASLGSLAKYTGGQVYHYPSFQAVTHGDKLKHELSRDLTRETAWESVMRIRCG 690
Query: 407 SDFEPGNSYGHFF 419
+GHF
Sbjct: 691 KGVRFTTYHGHFM 703
>Os11g0482100 Similar to Protein transport protein Sec24-like CEF
Length = 577
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 105/273 (38%), Gaps = 53/273 (19%)
Query: 155 PGSLFGLMTFSHKIGLYDV----QGPIPVVKNVFIPPDTEEDGLPVALEDAMPLLSFLAP 210
P ++ G+ TF I Y + Q P+ + I PD ++ P+ + + P
Sbjct: 26 PRTMVGIATFDSAIHFYSLKRAQQQPL-----MLIVPDVQDVYTPLQKD-------LILP 73
Query: 211 IDTCKDRIAAALDTLRPTSSWERGAASGQEPDTVLLGGRGFGTAMSALTDYLSSEYGTTF 270
+ C++ + L+++ R A S FG AM A
Sbjct: 74 VSECRENLEQLLESIPSMFENNRVADSA------------FGAAMKA------------- 108
Query: 271 ALGMPNYIFFLKKIQTARVFAFLSGAPDYGDGQLDTRRY-GEQYASKGEDPDLALLPEQI 329
F K ++ F S P G G L R G S G+ LL
Sbjct: 109 -------GFLAMKSTGGKLLVFQSVLPSLGVGSLSAREAEGRANVSTGDKEPHKLLQPVD 161
Query: 330 PFYKDLAAVAVQAGVCVDIFAITDEYTDLASLKFLSIESGGSLFLY----TNTDDSTLPQ 385
K +A + VCVD+F T Y D+AS+ + +GG ++ Y +D + L
Sbjct: 162 KTLKTMALEFAEYQVCVDVFLTTQSYVDIASISVVPNTTGGRVYYYYPFSARSDPAKLFN 221
Query: 386 DIYRLLSRPYAFGCVLRLRTSSDFEPGNSYGHF 418
D+ +SRP F V+R+R S + + +G+F
Sbjct: 222 DLRWNISRPQGFEAVMRVRCSQGLQVQDYFGNF 254
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,883,816
Number of extensions: 1124438
Number of successful extensions: 2483
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2475
Number of HSP's successfully gapped: 4
Length of query: 761
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 653
Effective length of database: 11,396,689
Effective search space: 7442037917
Effective search space used: 7442037917
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 160 (66.2 bits)