Os04g0412900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sec23/Sec24 trunk region domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0412900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Sec23/Sec24 trunk region domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 241.75 | 0.731 | 8.22 | -1.51 | 2.25 | 2.03 | 1.31 | -1.1 | -0.988 | 5.95 | 80.82 | 1139 | -- | -- |
| 243.19 | 0.726 | 8.2 | -1.4 | 2.24 | 1.94 | 1.3 | -- | -0.976 | 5.93 | 81.4 | 1145 | -- | -- |
| 245.72 | 0.73 | 8.22 | -1.49 | 2.25 | 1.99 | -- | -1.04 | -0.994 | 5.84 | 80.36 | 1150 | -- | -- |
| 246.87 | 0.732 | 8.21 | -1.39 | 2.23 | 1.88 | -- | -- | -0.974 | 5.77 | 80.68 | 1169 | -- | -- |
| 491.04 | 1.03 | 8.26 | -1.31 | -- | 2.27 | -- | -0.543 | -0.99 | -- | 87 | 1262 | -- | -- |
| 319.43 | 0.838 | 8.23 | -1.09 | 2.33 | -- | 0.862 | -- | -1.04 | 5.17 | -- | -- | -- | -- |
| 321.25 | 0.839 | 8.23 | -1.09 | 2.34 | -- | -- | -- | -1.04 | 5.12 | -- | -- | -- | -- |
| 491.39 | 1.03 | 8.25 | -1.28 | -- | 2.22 | -- | -- | -0.98 | -- | 87 | 1263 | -- | -- |
| 293.57 | 0.798 | 8.2 | -- | 2.16 | 1.72 | -- | -- | -0.927 | 5.7 | 88 | 1199 | -- | -- |
| 607.32 | 1.15 | 8.26 | -1.01 | -- | -- | -- | -- | -0.983 | -- | -- | -- | -- | -- |
| 352.76 | 0.879 | 8.2 | -- | 2.32 | -- | -- | -- | -0.92 | 5.14 | -- | -- | -- | -- |
| 531.82 | 1.07 | 8.23 | -- | -- | 2.1 | -- | -- | -0.879 | -- | 90 | 1266 | -- | -- |
| 634.25 | 1.18 | 8.23 | -- | -- | -- | -- | -- | -0.871 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 242.08 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 2 | 242.33 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 8 | 244.51 | humidity | 60 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 18 | 245.82 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 21 | 246.42 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 10 |
| 26 | 247.05 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 32 | 247.82 | humidity | 70 | 720 | > th | dose independent | sin | 11 | NA |
| 33 | 247.88 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 53 | 248.21 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 64 | 248.87 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 18 |
| 125 | 251.14 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 132 | 251.32 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 14 |
| 137 | 251.51 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 3 |
| 152 | 252.01 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 153 | 252.14 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 157 | 252.28 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 175 | 252.77 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 10 |
| 182 | 252.94 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 188 | 253.05 | humidity | 80 | 720 | < th | dose independent | rect. | 17 | 5 |
| 193 | 253.20 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 13 |
| 227 | 253.82 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 237 | 253.92 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 253 | 253.96 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 256 | 254.09 | humidity | 90 | 720 | < th | dose dependent | sin | 14 | NA |
| 257 | 254.10 | humidity | 80 | 720 | > th | dose independent | rect. | 6 | 18 |
| 261 | 254.23 | humidity | 80 | 720 | > th | dose independent | rect. | 6 | 16 |
| 277 | 254.46 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 19 |
| 322 | 255.41 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 329 | 255.47 | humidity | 70 | 720 | > th | dose dependent | sin | 18 | NA |
| 333 | 255.51 | humidity | 70 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 334 | 255.53 | humidity | 80 | 720 | > th | dose independent | sin | 18 | NA |
| 335 | 255.56 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 350 | 255.79 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 377 | 256.16 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 404 | 256.64 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 11 |
| 407 | 256.66 | humidity | 80 | 1440 | < th | dose dependent | rect. | 1 | 21 |
| 412 | 256.68 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 16 |
| 435 | 256.81 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 439 | 256.81 | humidity | 80 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 490 | 257.04 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 510 | 257.27 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 513 | 257.29 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 15 |
| 514 | 257.29 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 517 | 257.30 | humidity | 90 | 1440 | < th | dose dependent | sin | 2 | NA |
| 527 | 257.35 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 528 | 257.35 | humidity | 80 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 575 | 257.55 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 9 |
| 618 | 257.84 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 17 |
| 641 | 258.10 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 675 | 258.24 | humidity | 80 | 720 | < th | dose independent | rect. | 20 | 1 |
| 734 | 258.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 755 | 258.67 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 12 |
| 791 | 258.82 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 795 | 258.84 | humidity | 80 | 1440 | < th | dose dependent | sin | 22 | NA |
| 833 | 258.97 | humidity | 50 | 1440 | > th | dose dependent | sin | 1 | NA |
| 852 | 259.04 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 18 |
| 996 | 259.68 | radiation | 20 | 1440 | > th | dose independent | sin | 12 | NA |