BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0412900 Os04g0412900|AK073418
(739 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0412900 Sec23/Sec24 trunk region domain containing pro... 1517 0.0
Os05g0443300 Sec23/Sec24 trunk region domain containing pro... 814 0.0
Os04g0129500 Zinc finger, Sec23/Sec24-type domain containin... 104 3e-22
Os11g0482100 Similar to Protein transport protein Sec24-lik... 91 4e-18
>Os04g0412900 Sec23/Sec24 trunk region domain containing protein
Length = 739
Score = 1517 bits (3928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 739/739 (100%), Positives = 739/739 (100%)
Query: 1 MAVRASLACFPSDAALQESSGIPWGVAVTPFSAADERGAAPATGAEGHLLPRCDSCYAYF 60
MAVRASLACFPSDAALQESSGIPWGVAVTPFSAADERGAAPATGAEGHLLPRCDSCYAYF
Sbjct: 1 MAVRASLACFPSDAALQESSGIPWGVAVTPFSAADERGAAPATGAEGHLLPRCDSCYAYF 60
Query: 61 STLCPLHRWSWSCAICSADNDLTPDASARYARDGGQDPPEMRSAFVDLLLPGEEGEAATT 120
STLCPLHRWSWSCAICSADNDLTPDASARYARDGGQDPPEMRSAFVDLLLPGEEGEAATT
Sbjct: 61 STLCPLHRWSWSCAICSADNDLTPDASARYARDGGQDPPEMRSAFVDLLLPGEEGEAATT 120
Query: 121 TPVYVAAIDLSSSEEFLELVKSALLAALEAIPPGSLFGLLTFSSKIGLYDVQGPIPIVKN 180
TPVYVAAIDLSSSEEFLELVKSALLAALEAIPPGSLFGLLTFSSKIGLYDVQGPIPIVKN
Sbjct: 121 TPVYVAAIDLSSSEEFLELVKSALLAALEAIPPGSLFGLLTFSSKIGLYDVQGPIPIVKN 180
Query: 181 AFIPPDSDGTLLVDLEDVMPLRSFLAPVDGCKDRIAEALETIKPTSSWEITATASEVQDH 240
AFIPPDSDGTLLVDLEDVMPLRSFLAPVDGCKDRIAEALETIKPTSSWEITATASEVQDH
Sbjct: 181 AFIPPDSDGTLLVDLEDVMPLRSFLAPVDGCKDRIAEALETIKPTSSWEITATASEVQDH 240
Query: 241 ALHHARGFGLAMDAVVNYLCTEYGSLFELARIFTFLSGPPNYGPGQIETRSDVDHNAAKM 300
ALHHARGFGLAMDAVVNYLCTEYGSLFELARIFTFLSGPPNYGPGQIETRSDVDHNAAKM
Sbjct: 241 ALHHARGFGLAMDAVVNYLCTEYGSLFELARIFTFLSGPPNYGPGQIETRSDVDHNAAKM 300
Query: 301 LGSDHTFISEQTNFYTNLAASAVQAGVCVDLFAITNEYTDLSSLKVLSVESGGSLYMYSS 360
LGSDHTFISEQTNFYTNLAASAVQAGVCVDLFAITNEYTDLSSLKVLSVESGGSLYMYSS
Sbjct: 301 LGSDHTFISEQTNFYTNLAASAVQAGVCVDLFAITNEYTDLSSLKVLSVESGGSLYMYSS 360
Query: 361 TDESTLPQDIYKMLSRPYAFGCVLRLRTSSEFKIADSYGHFFPDPQYMHVQHINCCDSFA 420
TDESTLPQDIYKMLSRPYAFGCVLRLRTSSEFKIADSYGHFFPDPQYMHVQHINCCDSFA
Sbjct: 361 TDESTLPQDIYKMLSRPYAFGCVLRLRTSSEFKIADSYGHFFPDPQYMHVQHINCCDSFA 420
Query: 421 TYVYDFEFQKDSQFSRKSSPPILQIAFKYTTIVQQGDTSDDVSNSVSRSKFTLQRRLRVR 480
TYVYDFEFQKDSQFSRKSSPPILQIAFKYTTIVQQGDTSDDVSNSVSRSKFTLQRRLRVR
Sbjct: 421 TYVYDFEFQKDSQFSRKSSPPILQIAFKYTTIVQQGDTSDDVSNSVSRSKFTLQRRLRVR 480
Query: 481 TIQYNITANIWDLYDFVDPDVVLTILVHQVILASLSDVLEARIWLRDWLVNFIAQYNKAY 540
TIQYNITANIWDLYDFVDPDVVLTILVHQVILASLSDVLEARIWLRDWLVNFIAQYNKAY
Sbjct: 481 TIQYNITANIWDLYDFVDPDVVLTILVHQVILASLSDVLEARIWLRDWLVNFIAQYNKAY 540
Query: 541 KVVRSGGTGMSDIDVDFIHCSQLQPLSRLVFAFLLSPLLQLHGQGIHPDYRTYLQCLFSA 600
KVVRSGGTGMSDIDVDFIHCSQLQPLSRLVFAFLLSPLLQLHGQGIHPDYRTYLQCLFSA
Sbjct: 541 KVVRSGGTGMSDIDVDFIHCSQLQPLSRLVFAFLLSPLLQLHGQGIHPDYRTYLQCLFSA 600
Query: 601 LEASSLRQAICPTLISYSSPDVEAEVHQSLSRSVFNSESPIFLLDAYTDLLVYYSPTVSS 660
LEASSLRQAICPTLISYSSPDVEAEVHQSLSRSVFNSESPIFLLDAYTDLLVYYSPTVSS
Sbjct: 601 LEASSLRQAICPTLISYSSPDVEAEVHQSLSRSVFNSESPIFLLDAYTDLLVYYSPTVSS 660
Query: 661 TIPFPPPRDCLLRSKIDRLKQERNITPKLVFIHGAHDDTTAFERYLIEDQSVDGSLVASA 720
TIPFPPPRDCLLRSKIDRLKQERNITPKLVFIHGAHDDTTAFERYLIEDQSVDGSLVASA
Sbjct: 661 TIPFPPPRDCLLRSKIDRLKQERNITPKLVFIHGAHDDTTAFERYLIEDQSVDGSLVASA 720
Query: 721 TGFRSFLEGIRSRIAEYSR 739
TGFRSFLEGIRSRIAEYSR
Sbjct: 721 TGFRSFLEGIRSRIAEYSR 739
>Os05g0443300 Sec23/Sec24 trunk region domain containing protein
Length = 761
Score = 814 bits (2102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/753 (57%), Positives = 537/753 (71%), Gaps = 27/753 (3%)
Query: 1 MAVRASLACFPSDAALQESSGIPWGVAVTPFSAADERGAAPATGAEGHLLPRCDSCYAYF 60
MA RA+ + FP A E+ + WG+AVTPF+AADERG APA GA G +PRC+ C+AY
Sbjct: 1 MAARATFSRFPVTAEALEACAVQWGIAVTPFAAADERGQAPAAGAGGDRVPRCEHCWAYL 60
Query: 61 STLCPLHRWSWSCAICSADNDLTPDASARYARDGGQDPPEMRSAFVDLLLP--GEEG--E 116
++ C + RW WSCA+C N DA R G PE+ S+FVDL +P G EG +
Sbjct: 61 NSHCDMERWGWSCALCGTLNGFDDDALRRLQHPEGW--PELTSSFVDLEIPVDGSEGAGD 118
Query: 117 AATTTPVYVAAIDLSSSEEFLELVKSALLAALEAIPPGSLFGLLTFSSKIGLYDVQGPIP 176
PVYVAA+DL+ SEEFLEL+KSALLAALEA+ PGSLFGL+TFS KIGLYDVQGPIP
Sbjct: 119 GVQARPVYVAAVDLACSEEFLELIKSALLAALEALIPGSLFGLMTFSHKIGLYDVQGPIP 178
Query: 177 IVKNAFIPPDS--DGTLLVDLEDVMPLRSFLAPVDGCKDRIAEALETIKPTSSWEITATA 234
+VKN FIPPD+ DG L V LED MPL SFLAP+D CKDRIA AL+T++PTSSWE A +
Sbjct: 179 VVKNVFIPPDTEEDG-LPVALEDAMPLLSFLAPIDTCKDRIAAALDTLRPTSSWERGAAS 237
Query: 235 SEVQDHALHHARGFGLAMDAVVNYLCTEYGSLFEL--------------ARIFTFLSGPP 280
+ D L RGFG AM A+ +YL +EYG+ F L AR+F FLSG P
Sbjct: 238 GQEPDTVLLGGRGFGTAMSALTDYLSSEYGTTFALGMPNYIFFLKKIQTARVFAFLSGAP 297
Query: 281 NYGPGQIETRSDVDHNAAKMLGSDHTFISEQTNFYTNLAASAVQAGVCVDLFAITNEYTD 340
+YG GQ++TR + A+K D + EQ FY +LAA AVQAGVCVD+FAIT+EYTD
Sbjct: 298 DYGDGQLDTRRYGEQYASKGEDPDLALLPEQIPFYKDLAAVAVQAGVCVDIFAITDEYTD 357
Query: 341 LSSLKVLSVESGGSLYMYSSTDESTLPQDIYKMLSRPYAFGCVLRLRTSSEFKIADSYGH 400
L+SLK LS+ESGGSL++Y++TD+STLPQDIY++LSRPYAFGCVLRLRTSS+F+ +SYGH
Sbjct: 358 LASLKFLSIESGGSLFLYTNTDDSTLPQDIYRLLSRPYAFGCVLRLRTSSDFEPGNSYGH 417
Query: 401 FFPDPQYMHVQHINCCDSFATYVYDFEFQKDSQFSRKSSPPILQIAFKYTTIVQQGDTSD 460
FFPDPQY HVQHI CCDSFATY YDF F FSR + P ++QIAF+Y+ I TS+
Sbjct: 418 FFPDPQYEHVQHIICCDSFATYAYDFNFSHPEGFSRHTDPAVVQIAFQYSVIEPVKHTSE 477
Query: 461 DVSNSVSRSKFTLQRRLRVRTIQYNITANIWDLYDFVDPDVVLTILVHQVILASL-SDVL 519
+ + S + + F L+RRLR+RT+QY NI ++YD VDP+ +L ILVH+VIL SL V
Sbjct: 478 NETQSSTSNMFCLKRRLRIRTLQYRPAKNINEIYDSVDPETLLHILVHKVILISLDKGVK 537
Query: 520 EARIWLRDWLVNFIAQYNKAYKVVRSGGTGMSDIDVDFIHCSQLQPLSRLVFAFLLSPLL 579
E R + DWL IA+YN+A + S +DVDF+ C QLQ L +LVFA L +PLL
Sbjct: 538 EGRSLVHDWLSLLIARYNQALR--SDARIPESHVDVDFLQCPQLQMLPQLVFALLRNPLL 595
Query: 580 QLHGQGIHPDYRTYLQCLFSALEASSLRQAICPTLISYSSPDVEAEVHQSLSR-SVFNSE 638
QLH +GIHPDYR YLQCLFSALE SSL +AI P L+SYSSPD +A +LSR ++ SE
Sbjct: 596 QLHEEGIHPDYRIYLQCLFSALEPSSLAKAIYPVLVSYSSPDKQAFPRHTLSRAALIMSE 655
Query: 639 SPIFLLDAYTDLLVYYSPTVSSTIPFPPPRDCLLRSKIDRLKQERNITPKLVFIHGAHDD 698
SPIFLLDA+T+L+VYYSP+ ++PFPPP DCLLR+ ++ LKQ R ITPKL FIHG +D
Sbjct: 656 SPIFLLDAFTNLIVYYSPSADPSLPFPPPHDCLLRTMVNELKQGRCITPKLTFIHGGRED 715
Query: 699 TTAFERYLIEDQSVDGSLVASATGFRSFLEGIR 731
FERYLIE+Q VDG+ S GF SF E IR
Sbjct: 716 PALFERYLIEEQDVDGTGFTSGKGFVSFRESIR 748
>Os04g0129500 Zinc finger, Sec23/Sec24-type domain containing protein
Length = 1031
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 132/566 (23%), Positives = 236/566 (41%), Gaps = 79/566 (13%)
Query: 4 RASLACFPSDAALQESSGIPWGVAVTPFSAADERGAAPATGAEGHLLPRCDSCYAY---F 60
R + P+ +L +P G V P + + + G P + RC C Y +
Sbjct: 318 RLTTHAIPASQSLVSRWHLPLGAVVHPLAESPD-GEVPVINFGSAGVIRCRRCRTYINPY 376
Query: 61 STLCPLHRWSWSCAICSADNDLTP------DASARYARDGGQDPPEMRSAFVDLLLPGEE 114
+T R W C +C+ ND+ D S R R PE+ V+ + P E
Sbjct: 377 ATFADAGR-KWRCNLCTLLNDVPGEYFCGIDGSGR--RYDADQRPELSKGTVEFVAPTEY 433
Query: 115 GEAATTTPVYVAAIDLSSS---EEFLELVKSALLAALEAIP--PGSLFGLLTFSSKIGLY 169
P Y ID+S S LE+V + + L+ +P P + G LTF S + +
Sbjct: 434 MVRPPMPPSYFFLIDVSVSAVRSGLLEVVAKTIKSCLDDLPGFPRTQIGFLTFDSTLHFH 493
Query: 170 DVQGPIPIVKNAFIPPDSDGTLLVDLEDVMPLRSFLAPVDGCKDRIAEALETIKPTSSWE 229
+ K++ P ++ DL+DV FL D D + +++ S+
Sbjct: 494 NF-------KSSLSQPQM--MVVADLDDV-----FLPLPD---DLLVNLVDSRHVVDSF- 535
Query: 230 ITATASEVQDHALHHARGFGLAMDAVVNYLCTEYGSLFELARIFTFLSGPPNYGPGQIET 289
+ + + QD+ ++ G A+ A + G ++ F S P+ G G++
Sbjct: 536 LDSLPNMFQDN-VNVESALGPALKAAFMVMSQIGG------KLLVFQSTLPSLGVGRLRL 588
Query: 290 RSDVDHNAAKMLGSD--HTFISEQTNFYTNLAASAVQAGVCVDLFAITNEYTDLSSLKVL 347
R D + G+D H+ + FY +AA + + VD+F+ +++Y D++SL L
Sbjct: 589 RGD----DVRAYGTDKEHSLRVPEDPFYKQMAAEFTKNQIAVDIFSFSDKYCDIASLGSL 644
Query: 348 SVESGGSLYMYSS----TDESTLPQDIYKMLSRPYAFGCVLRLRTSSEFKIADSYGHFFP 403
+ +GG +Y Y S T L ++ + L+R A+ V+R+R + +GHF
Sbjct: 645 AKYTGGQVYHYPSFQAVTHGDKLKHELSRDLTRETAWESVMRIRCGKGVRFTTYHGHFM- 703
Query: 404 DPQYMHVQHINCCDSFATYVYDFEFQKDSQFSRKSSPPILQIAFKYTTIVQQGDTSDDVS 463
+ D A D D F+ +Q++ + T + Q +
Sbjct: 704 ---------LRSTDLLALPAVD----SDKAFA-------MQLSLEETLMTTQ---TVYFQ 740
Query: 464 NSVSRSKFTLQRRLRVRTIQYNITANIWDLYDFVDPDVVLTILVHQVILASLSDVLEA-R 522
++ + + +RR+RV T + ++ ++Y D ++++L + SLSD L++ R
Sbjct: 741 VALLYTSSSGERRIRVHTAAAPVVTDLGEMYRQADTGAIVSLLSRIAVENSLSDKLDSVR 800
Query: 523 IWLRDWLVNFIAQYNKAYKVV-RSGG 547
L+ LV + +Y Y V R GG
Sbjct: 801 QQLQLKLVRSLKEYRNLYVVQHRIGG 826
>Os11g0482100 Similar to Protein transport protein Sec24-like CEF
Length = 577
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 103/422 (24%), Positives = 179/422 (42%), Gaps = 73/422 (17%)
Query: 142 SALLAALEAIPPG--SLFGLLTFSSKIGLYDV----QGPIPIVKNAFIPPDSDGTLLVDL 195
SA+ A+ +P G ++ G+ TF S I Y + Q P+ ++ +P D+
Sbjct: 13 SAISQAISDLPEGPRTMVGIATFDSAIHFYSLKRAQQQPLMLI----VP---------DV 59
Query: 196 EDV-MPL-RSFLAPVDGCKDRIAEALETIKPTSSWEITATASEVQDHALHHARGFGLAMD 253
+DV PL + + PV C++ + + LE+I S +E + V D A FG AM
Sbjct: 60 QDVYTPLQKDLILPVSECRENLEQLLESIP--SMFE----NNRVADSA------FGAAMK 107
Query: 254 AVVNYLCTEYGSLFELARIFTFLSGPPNYGPGQIETR-SDVDHNAAKMLGSDHTFISEQT 312
A + + G ++ F S P+ G G + R ++ N + H +
Sbjct: 108 AGFLAMKSTGG------KLLVFQSVLPSLGVGSLSAREAEGRANVSTGDKEPHKLLQPVD 161
Query: 313 NFYTNLAASAVQAGVCVDLFAITNEYTDLSSLKVLSVESGGSLYMY----SSTDESTLPQ 368
+A + VCVD+F T Y D++S+ V+ +GG +Y Y + +D + L
Sbjct: 162 KTLKTMALEFAEYQVCVDVFLTTQSYVDIASISVVPNTTGGRVYYYYPFSARSDPAKLFN 221
Query: 369 DIYKMLSRPYAFGCVLRLRTSSEFKIADSYGHFFPD-PQYMHVQHINCCDS-FATYVYDF 426
D+ +SRP F V+R+R S ++ D +G+F P + + I+ + T+ +D
Sbjct: 222 DLRWNISRPQGFEAVMRVRCSQGLQVQDYFGNFCKRVPTDIDLPSIDSDKTIMVTFKHDD 281
Query: 427 EFQKDSQFSRKSSPPILQIAFKYTTIVQQGDTSDDVSNSVSRSKFTLQRRLRVRTIQYNI 486
+ Q++S+ Q A YTT+ QRR+RV +
Sbjct: 282 KLQENSECG-------FQCALLYTTVYG-------------------QRRIRVMNLSLPC 315
Query: 487 TANIWDLYDFVDPDVVLTILVHQVILA-SLSDVLEARIWLRDWLVNFIAQYNKAYKVVRS 545
T + +L+ + D + T + Q S +L R + + +N + Y K V S
Sbjct: 316 TNMLSNLFRYADLETQFTCFLKQAANGIPTSTLLHLREEVTNTCINILQSYRKYCASVSS 375
Query: 546 GG 547
G
Sbjct: 376 SG 377
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,969,274
Number of extensions: 1105198
Number of successful extensions: 2667
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2658
Number of HSP's successfully gapped: 4
Length of query: 739
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 631
Effective length of database: 11,396,689
Effective search space: 7191310759
Effective search space used: 7191310759
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)