Os12g0430000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sec23/Sec24 trunk region domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os12g0430000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Sec23/Sec24 trunk region domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.37 | 0.232 | 9.92 | 0.659 | 0.338 | 0.593 | 0.167 | -1.26 | 0.269 | 13.7 | 91.86 | 294 | -- | -- |
| 26.35 | 0.239 | 9.91 | 0.636 | 0.353 | 0.574 | 0.349 | -- | 0.238 | 13.9 | 92.45 | 280 | -- | -- |
| 24.41 | 0.23 | 9.92 | 0.661 | 0.332 | 0.626 | -- | -1.44 | 0.263 | 13.5 | 92.53 | 286 | -- | -- |
| 26.84 | 0.241 | 9.91 | 0.635 | 0.332 | 0.592 | -- | -- | 0.249 | 13.6 | 92.76 | 289 | -- | -- |
| 30.08 | 0.255 | 9.92 | 0.673 | -- | 0.554 | -- | -1.54 | 0.238 | -- | 93.45 | 341 | -- | -- |
| 30.72 | 0.26 | 9.93 | 0.669 | 0.281 | -- | 0.1 | -- | 0.181 | 11.7 | -- | -- | -- | -- |
| 30.76 | 0.26 | 9.93 | 0.673 | 0.281 | -- | -- | -- | 0.182 | 11.6 | -- | -- | -- | -- |
| 32.16 | 0.264 | 9.92 | 0.656 | -- | 0.694 | -- | -- | 0.223 | -- | 94.29 | 351 | -- | -- |
| 37.32 | 0.285 | 9.93 | -- | 0.354 | 0.678 | -- | -- | 0.198 | 13.9 | 92.41 | 276 | -- | -- |
| 35.72 | 0.279 | 9.93 | 0.665 | -- | -- | -- | -- | 0.179 | -- | -- | -- | -- | -- |
| 42.69 | 0.306 | 9.94 | -- | 0.274 | -- | -- | -- | 0.107 | 11.4 | -- | -- | -- | -- |
| 42.42 | 0.303 | 9.93 | -- | -- | 0.469 | -- | -- | 0.188 | -- | 87.87 | 885 | -- | -- |
| 47.39 | 0.321 | 9.95 | -- | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.03 | humidity | 90 | 270 | > th | dose dependent | rect. | 21 | 10 |
| 9 | 24.24 | humidity | 90 | 270 | > th | dose dependent | sin | 9 | NA |
| 27 | 24.39 | humidity | 90 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 138 | 24.92 | humidity | 90 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 163 | 25.01 | humidity | 90 | 270 | > th | dose dependent | no | NA | NA |
| 165 | 25.03 | humidity | 90 | 270 | > th | dose independent | rect. | 23 | 8 |
| 188 | 25.21 | humidity | 90 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 240 | 25.54 | humidity | 90 | 270 | > th | dose independent | sin | 9 | NA |
| 318 | 25.84 | humidity | 80 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 320 | 25.85 | humidity | 90 | 30 | > th | dose independent | rect. | 5 | 3 |
| 363 | 25.96 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 481 | 26.14 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 626 | 26.33 | radiation | 40 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 673 | 26.42 | radiation | 40 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 681 | 26.44 | humidity | 90 | 270 | > th | dose independent | rect. | 12 | 20 |
| 697 | 26.46 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 717 | 26.49 | radiation | 40 | 270 | < th | dose dependent | rect. | 8 | 17 |
| 735 | 26.53 | radiation | 40 | 270 | < th | dose independent | rect. | 8 | 17 |
| 746 | 26.55 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 7 |
| 814 | 26.65 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 5 |
| 832 | 26.67 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 852 | 26.69 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 858 | 26.70 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 880 | 26.72 | radiation | 10 | 270 | < th | dose independent | rect. | 7 | 19 |