BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0455800 Os11g0455800|AK101450
(256 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0455800 Similar to Hydroxymethyltransferase 506 e-144
Os12g0409000 Similar to Hydroxymethyltransferase 442 e-125
AK109000 321 3e-88
Os01g0874900 Similar to Hydroxymethyltransferase 306 7e-84
Os05g0429000 Similar to Hydroxymethyltransferase 304 3e-83
Os03g0738400 Similar to Serine hydroxymethyltransferase, cy... 261 4e-70
AK111207 233 7e-62
>Os11g0455800 Similar to Hydroxymethyltransferase
Length = 256
Score = 506 bits (1302), Expect = e-144, Method: Compositional matrix adjust.
Identities = 245/256 (95%), Positives = 245/256 (95%)
Query: 1 MAHISGLVAAQEAANPFEYCDVVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDY 60
MAHISGLVAAQEAANPFEYCDVVTTTTHKSLRGPRAGMIFYR EGAVYDY
Sbjct: 1 MAHISGLVAAQEAANPFEYCDVVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDY 60
Query: 61 EDKINFAVFPSLQGGPHNHQIAALAVALQQTMTPGFKAYAKQVKANAVAIGKYLMSKGYK 120
EDKINFAVFPSLQGGPHNHQIAALAVALQQTMTPGFKAYAKQVKANAVAIGKYLMSKGYK
Sbjct: 61 EDKINFAVFPSLQGGPHNHQIAALAVALQQTMTPGFKAYAKQVKANAVAIGKYLMSKGYK 120
Query: 121 MVTDGTENHLVLWDLRPLGLTGNKVEKMCDLCSITLNKNAVFGDSSALAPGGVRIGTPAM 180
MVTDGTENHLVLWDLRPLGLTGNKVEKMCDLCSITLNKNAVFGDSSALAPGGVRIGTPAM
Sbjct: 121 MVTDGTENHLVLWDLRPLGLTGNKVEKMCDLCSITLNKNAVFGDSSALAPGGVRIGTPAM 180
Query: 181 TSRGLVEKDFEQIGEFLHQAVTICLNIQKEHGKLLKDFSKGLVNNKDIENLKLEVEKFAT 240
TSRGLVEKDFEQIGEFLHQAVTICLNIQKEHGKLLKDFSKGLVNNKDIENLKLEVEKFAT
Sbjct: 181 TSRGLVEKDFEQIGEFLHQAVTICLNIQKEHGKLLKDFSKGLVNNKDIENLKLEVEKFAT 240
Query: 241 SFDMPGFTLDSMKYKE 256
SFDMPGFTLDSMKYKE
Sbjct: 241 SFDMPGFTLDSMKYKE 256
>Os12g0409000 Similar to Hydroxymethyltransferase
Length = 462
Score = 442 bits (1138), Expect = e-125, Method: Compositional matrix adjust.
Identities = 209/256 (81%), Positives = 232/256 (90%)
Query: 1 MAHISGLVAAQEAANPFEYCDVVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDY 60
MAHISGLVAAQEAANPF+Y DVVTTTTHKSLRGPR+GMIFYR EGA+YDY
Sbjct: 207 MAHISGLVAAQEAANPFQYSDVVTTTTHKSLRGPRSGMIFYRKGLKPPKKGQPEGALYDY 266
Query: 61 EDKINFAVFPSLQGGPHNHQIAALAVALQQTMTPGFKAYAKQVKANAVAIGKYLMSKGYK 120
ED+INFAVFPSLQGGPHNHQIAALAV L+QTM+PGFK+Y KQVKANAVA+G +LMSKGYK
Sbjct: 267 EDRINFAVFPSLQGGPHNHQIAALAVGLKQTMSPGFKSYIKQVKANAVALGNHLMSKGYK 326
Query: 121 MVTDGTENHLVLWDLRPLGLTGNKVEKMCDLCSITLNKNAVFGDSSALAPGGVRIGTPAM 180
+VTDGTENHLVLWDLRPLGLTGNKVEK+CDLCSITLNKNAVFGDSSA++PGGVRIGTPAM
Sbjct: 327 LVTDGTENHLVLWDLRPLGLTGNKVEKVCDLCSITLNKNAVFGDSSAMSPGGVRIGTPAM 386
Query: 181 TSRGLVEKDFEQIGEFLHQAVTICLNIQKEHGKLLKDFSKGLVNNKDIENLKLEVEKFAT 240
TSRGLVE+DF QI EFLHQAVTICL++QKE GKLLK F++GL NNKDIE+L+ EVEKFAT
Sbjct: 387 TSRGLVEEDFVQIAEFLHQAVTICLDVQKERGKLLKYFNEGLENNKDIEDLRAEVEKFAT 446
Query: 241 SFDMPGFTLDSMKYKE 256
SF+MPGF + MKYK+
Sbjct: 447 SFEMPGFRVSDMKYKD 462
>AK109000
Length = 493
Score = 321 bits (823), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 155/256 (60%), Positives = 187/256 (73%), Gaps = 3/256 (1%)
Query: 1 MAHISGLVAAQEAANPFEYCDVVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXX---EGAV 57
MAHISGLVAA +PFEY D+VTTTTHKSLRGPRAGMIF R EG
Sbjct: 238 MAHISGLVAAGVVDSPFEYADIVTTTTHKSLRGPRAGMIFMRKGPKPADRLAKGEPEGTE 297
Query: 58 YDYEDKINFAVFPSLQGGPHNHQIAALAVALQQTMTPGFKAYAKQVKANAVAIGKYLMSK 117
YDYE KI+FAVFPSLQGGPHNHQIAALAVAL+ + FKAY +QV AN+ A+G+ L
Sbjct: 298 YDYESKIDFAVFPSLQGGPHNHQIAALAVALKHAASEEFKAYQRQVVANSRALGEALKKH 357
Query: 118 GYKMVTDGTENHLVLWDLRPLGLTGNKVEKMCDLCSITLNKNAVFGDSSALAPGGVRIGT 177
G+K+VTDGT+NHL+LWDLR G+TG K+EK CD ITLNKNAV GD SA+ PGGVRIGT
Sbjct: 358 GHKLVTDGTDNHLLLWDLRGEGITGAKMEKACDEAHITLNKNAVVGDVSAMNPGGVRIGT 417
Query: 178 PAMTSRGLVEKDFEQIGEFLHQAVTICLNIQKEHGKLLKDFSKGLVNNKDIENLKLEVEK 237
PAMTSRGL E DFE++ EFLH+ + + +Q HGKLLKD+ G+ N + ++ VE
Sbjct: 418 PAMTSRGLTEADFEKVAEFLHEVLQVAKEVQASHGKLLKDWIVGITGNAKLAEIRSRVEA 477
Query: 238 FATSFDMPGFTLDSMK 253
FA+SF MPG+ +D ++
Sbjct: 478 FASSFSMPGYAVDDLQ 493
>Os01g0874900 Similar to Hydroxymethyltransferase
Length = 600
Score = 306 bits (785), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 144/253 (56%), Positives = 187/253 (73%), Gaps = 4/253 (1%)
Query: 1 MAHISGLVAAQEAANPFEYCDVVTTTTHKSLRGPRAGMIFYRX----XXXXXXXXXXEGA 56
MAHISGLVAA+E +PF+YCDVVT+TTHK+LRGPR G+IF+R +
Sbjct: 348 MAHISGLVAAKECRSPFDYCDVVTSTTHKNLRGPRGGIIFFRRGKNLRRRTGSFSQADEN 407
Query: 57 VYDYEDKINFAVFPSLQGGPHNHQIAALAVALQQTMTPGFKAYAKQVKANAVAIGKYLMS 116
YD+ED+INFAVFPS+QGGPHN+ IAALA+ L+Q TP +KAY QVK NA A+ L+
Sbjct: 408 DYDFEDRINFAVFPSMQGGPHNNHIAALAITLKQVATPEYKAYIIQVKKNAQALASALLR 467
Query: 117 KGYKMVTDGTENHLVLWDLRPLGLTGNKVEKMCDLCSITLNKNAVFGDSSALAPGGVRIG 176
+ ++VT GT+NHLVLWDLR LGLTG EK+C+ C I++NK ++GD+ +++PGGVRIG
Sbjct: 468 RKCRLVTGGTDNHLVLWDLRNLGLTGKNFEKVCEACHISINKMPIYGDNGSISPGGVRIG 527
Query: 177 TPAMTSRGLVEKDFEQIGEFLHQAVTICLNIQKEHGKLLKDFSKGLVNNKDIENLKLEVE 236
TPAMT+RG +E DFE I +FL +A I N+ KEHGK+ K+F +GL NNKDI L+ +VE
Sbjct: 528 TPAMTTRGCLEDDFEVIADFLIRATQIASNLMKEHGKMQKEFLRGLQNNKDIIELRNQVE 587
Query: 237 KFATSFDMPGFTL 249
FA+ F MPGF +
Sbjct: 588 NFASQFAMPGFDV 600
>Os05g0429000 Similar to Hydroxymethyltransferase
Length = 587
Score = 304 bits (779), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 145/254 (57%), Positives = 183/254 (72%), Gaps = 5/254 (1%)
Query: 1 MAHISGLVAAQEAANPFEYCDVVTTTTHKSLRGPRAGMIFYR-----XXXXXXXXXXXEG 55
MA ISGLVAA+E NPF+YCD+VT+TTHKSLRGPR G+IF+R E
Sbjct: 334 MAQISGLVAAKECRNPFDYCDIVTSTTHKSLRGPRGGIIFFRKGKNLRKRVGSLTQVVEN 393
Query: 56 AVYDYEDKINFAVFPSLQGGPHNHQIAALAVALQQTMTPGFKAYAKQVKANAVAIGKYLM 115
YD+ED+INFAVFPS+QGGPHN+ IAALA+AL+Q P FKAY +QVK NA A+ L+
Sbjct: 394 DQYDFEDRINFAVFPSMQGGPHNNHIAALAIALKQVAMPEFKAYIQQVKKNAQALAMALL 453
Query: 116 SKGYKMVTDGTENHLVLWDLRPLGLTGNKVEKMCDLCSITLNKNAVFGDSSALAPGGVRI 175
+ ++VT GT+NHL+LWDLR GLTG EK+C+ C I+LNK ++GD+ +++PGGVRI
Sbjct: 454 RRKCRLVTGGTDNHLMLWDLRTFGLTGKNFEKVCEACHISLNKTPIYGDNGSISPGGVRI 513
Query: 176 GTPAMTSRGLVEKDFEQIGEFLHQAVTICLNIQKEHGKLLKDFSKGLVNNKDIENLKLEV 235
GTPAMT+RG +E DFE + EFL +A I + KEHG+L KDF KGL NN DI L+ +V
Sbjct: 514 GTPAMTTRGCLESDFEIMAEFLLRAAHIASIVLKEHGRLQKDFLKGLENNNDIIELRNQV 573
Query: 236 EKFATSFDMPGFTL 249
E FA F MPGF +
Sbjct: 574 ETFALQFAMPGFDV 587
>Os03g0738400 Similar to Serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1)
(Serine methylase) (Glycine hydroxymethyltransferase)
(SHMT)
Length = 513
Score = 261 bits (667), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 132/260 (50%), Positives = 176/260 (67%), Gaps = 6/260 (2%)
Query: 1 MAHISGLVAAQEAANPFEYCDVVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDY 60
MAHISGLVAA +PF+Y DVVTTTTHKSLRGPR MIFYR E +YD+
Sbjct: 254 MAHISGLVAAGVVPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGVKGVNKQGKE-VMYDF 312
Query: 61 EDKINFAVFPSLQGGPHNHQIAALAVALQQTMTPGFKAYAKQVKANAVAIGKYLMSKGYK 120
EDKIN AVFP LQGGPHNH I LAVAL+Q TP ++AY +QV +N + L +KGY+
Sbjct: 313 EDKINAAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVMSNCAKFAQSLTAKGYE 372
Query: 121 MVTDGTENHLVLWDLRPLGLTGNKVEKMCDLCSITLNKNAVFGDSSALAPGGVRIGTPAM 180
+V+ GT+NHLVL +L+ G+ G++VEK+ + I NKN V GD SA+ PGG+R+GTPA+
Sbjct: 373 LVSGGTDNHLVLVNLKSKGIDGSRVEKVLENVHIAANKNTVPGDVSAMVPGGIRMGTPAL 432
Query: 181 TSRGLVEKDFEQIGEFLHQAVTICLNIQKEHGKL-LKDFSKGLVNNKDIEN----LKLEV 235
TSRG VE+DF ++ +F AV + L ++ G LKDF L ++ +I++ L+ +V
Sbjct: 433 TSRGFVEEDFAKVADFFDAAVNLALKVKAAAGGTKLKDFVATLQSDSNIQSEIAKLRHDV 492
Query: 236 EKFATSFDMPGFTLDSMKYK 255
E++A F GF ++MKYK
Sbjct: 493 EEYAKQFPTIGFEKETMKYK 512
>AK111207
Length = 471
Score = 233 bits (595), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 121/251 (48%), Positives = 156/251 (62%), Gaps = 7/251 (2%)
Query: 1 MAHISGLVAAQEAANPFEYCDVVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDY 60
MAHISGL+AA +PF Y D+VTTTTHKSLRGPR MIF+R + +YD
Sbjct: 221 MAHISGLIAAGVNKSPFPYADIVTTTTHKSLRGPRGAMIFFRKGVRKTDAKTGKETLYDL 280
Query: 61 EDKINFAVFPSLQGGPHNHQIAALAVALQQTMTPGFKAYAKQVKANAVAIGKYLMSKGYK 120
E INF+VFP QGGPHNH I ALAVAL+Q + F Y +QV NA + G+K
Sbjct: 281 EGPINFSVFPGHQGGPHNHTITALAVALKQAQSDDFTLYQQQVIKNAKQLENTFKELGFK 340
Query: 121 MVTDGTENHLVLWDLRPLGLTGNKVEKMCDLCSITLNKNAVFGDSSALAPGGVRIGTPAM 180
+VTDGT+NH+VL DL+P L G +VE + + +I NKN GD SAL P G+RIG PAM
Sbjct: 341 LVTDGTDNHMVLIDLKPFSLDGARVEAVLEQVNIACNKNTTPGDKSALTPMGIRIGAPAM 400
Query: 181 TSRGLVEKDFEQIGEFLHQAVTICLNIQ----KEHGKLLKDFSKGLVNN--KDIENLKLE 234
TSRGL E DF +I +++ + IC +Q KE+ K LKDF + ++I LK E
Sbjct: 401 TSRGLGEADFAKIANYINTCIQICKKVQAELPKENNK-LKDFKAKVAGGEVEEINQLKKE 459
Query: 235 VEKFATSFDMP 245
+ +A +F +P
Sbjct: 460 IAAWAVTFPLP 470
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,904,201
Number of extensions: 293243
Number of successful extensions: 742
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 737
Number of HSP's successfully gapped: 7
Length of query: 256
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 157
Effective length of database: 11,866,615
Effective search space: 1863058555
Effective search space used: 1863058555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)