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Os05g0429000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Hydroxymethyltransferase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0213) R2 : 0.462
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.8 (0.0927) R2dE : 0.478 R2E : 0.459
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.067 (0.046) R2dN8 : 0.00346 R2N8 : -0.0158
σ : 0.396
deviance : 72.44
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 15.47
memory length : 682
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.15 0.346 10.2 0.591 0.476 -1.35 0.11 3.26 0.183 9.55 21.27 651 -- --
59.93 0.361 10.2 0.0101 0.832 -0.914 -0.528 -- 0.0201 9.1 21.42 1746 -- --
54.19 0.343 10.2 0.585 0.475 -1.35 -- 3.21 0.181 9.59 21.3 646 -- --
58.39 0.356 10.2 0.0151 0.752 -1.23 -- -- -0.00169 7.86 15.91 1056 -- --
64.95 0.375 10.1 0.83 -- -1.6 -- 3.91 0.226 -- 22.05 692 -- --
84.34 0.431 10.3 -0.381 0.883 -- -0.27 -- -0.214 8.65 -- -- -- --
84.58 0.431 10.3 -0.39 0.884 -- -- -- -0.214 8.66 -- -- -- --
72.64 0.397 10.2 0.0885 -- -1.75 -- -- 0.115 -- 16.46 692 -- --
58.17 0.355 10.2 -- 0.731 -1.34 -- -- 0.00596 7.86 14.6 1005 -- --
128.63 0.53 10.3 -0.387 -- -- -- -- -0.206 -- -- -- -- --
88.58 0.44 10.3 -- 0.882 -- -- -- -0.171 8.69 -- -- -- --
72.44 0.396 10.2 -- -- -1.8 -- -- 0.067 -- 15.47 682 -- --
132.59 0.537 10.3 -- -- -- -- -- -0.163 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.78 radiation 10 14400 < th dose independent rect. 17 12
2 47.80 radiation 10 14400 < th dose independent rect. 17 7
8 47.82 radiation 10 14400 < th dose independent rect. 17 4
10 47.86 radiation 10 14400 < th dose independent rect. 17 2
13 48.58 radiation 10 14400 < th dose independent rect. 16 14
16 48.89 radiation 1 14400 > th dose dependent rect. 18 1
27 48.97 radiation 30 14400 < th dose independent rect. 15 17
29 49.17 radiation 1 14400 < th dose dependent rect. 17 7
30 49.18 radiation 1 14400 < th dose dependent rect. 17 4
37 49.19 radiation 1 14400 < th dose dependent rect. 17 2
42 49.57 radiation 1 14400 > th dose dependent rect. 4 2
72 49.88 humidity 90 43200 < th dose independent rect. 4 7
74 49.90 humidity 90 43200 < th dose independent rect. 3 9
86 49.93 radiation 1 14400 < th dose dependent rect. 17 21
98 50.13 humidity 90 43200 < th dose independent rect. 4 22
116 50.23 humidity 90 43200 > th dose independent rect. 9 1
117 50.23 humidity 80 43200 > th dose dependent rect. 9 2
118 50.25 humidity 90 43200 < th dose independent sin 3 NA
122 50.30 temperature 15 43200 > th dose independent rect. 5 1
142 50.37 temperature 15 43200 < th dose independent rect. 4 1
143 50.37 humidity 90 43200 < th dose independent rect. 20 1
146 50.39 humidity 90 43200 < th dose independent rect. 9 1
154 50.41 radiation 1 14400 < th dose dependent rect. 4 2
161 50.42 radiation 1 14400 < th dose dependent rect. 23 7
166 50.43 radiation 30 14400 > th dose dependent rect. 15 17
168 50.44 radiation 1 14400 < th dose dependent sin 11 NA
193 50.58 radiation 10 14400 < th dose independent sin 12 NA
206 50.61 humidity 90 43200 < th dose independent rect. 19 3
215 50.65 humidity 60 43200 > th dose independent rect. 16 1
229 50.71 radiation 1 14400 < th dose dependent rect. 6 23
256 50.77 radiation 1 14400 > th dose independent rect. 17 2
267 50.77 humidity 90 43200 < th dose independent rect. 18 22
269 50.78 humidity 90 43200 > th dose independent rect. 4 7
273 50.80 humidity 90 43200 < th dose independent rect. 15 23
276 50.82 radiation 30 14400 > th dose independent rect. 16 16
294 50.85 radiation 1 14400 < th dose dependent rect. 6 15
301 50.86 radiation 1 14400 < th dose dependent rect. 6 13
330 50.91 humidity 90 43200 < th dose independent no NA NA
346 50.95 humidity 90 43200 < th dose independent rect. 22 23
375 51.02 humidity 90 43200 > th dose independent rect. 5 21
395 51.06 radiation 1 14400 < th dose dependent rect. 13 22
404 51.08 humidity 90 43200 < th dose independent rect. 11 23
405 51.09 humidity 90 43200 > th dose independent sin 3 NA
406 51.09 humidity 90 43200 > th dose independent rect. 5 2
420 51.10 humidity 80 43200 > th dose dependent rect. 4 9
423 51.10 radiation 1 14400 < th dose dependent rect. 4 15
451 51.11 radiation 1 14400 < th dose dependent no NA NA
458 51.11 radiation 1 14400 < th dose dependent rect. 23 20
484 51.13 wind 5 43200 > th dose independent rect. 11 1
498 51.14 humidity 90 43200 < th dose independent rect. 8 23
504 51.15 wind 5 43200 < th dose independent rect. 11 1
505 51.15 humidity 60 43200 < th dose independent rect. 16 1
516 51.15 radiation 1 14400 < th dose dependent rect. 10 23
539 51.18 radiation 1 14400 < th dose dependent rect. 4 10
555 51.20 radiation 1 14400 < th dose dependent rect. 20 18
562 51.21 radiation 1 14400 < th dose dependent rect. 22 16
579 51.23 radiation 10 14400 < th dose independent rect. 20 11
593 51.24 radiation 10 14400 < th dose independent rect. 22 9
610 51.25 radiation 10 14400 < th dose independent rect. 4 3
616 51.25 humidity 90 43200 < th dose independent rect. 15 9
646 51.30 humidity 90 43200 < th dose independent sin 19 NA
660 51.31 atmosphere 1005 43200 > th dose independent rect. 16 1
674 51.32 humidity 80 43200 > th dose independent rect. 12 1
693 51.33 atmosphere 1005 43200 < th dose independent rect. 16 1
728 51.38 humidity 90 43200 > th dose independent rect. 8 18
777 51.43 radiation 1 14400 < th dose dependent rect. 13 16
790 51.45 humidity 90 43200 > th dose dependent rect. 19 1
823 51.48 radiation 20 14400 < th dose dependent rect. 20 10
829 51.49 radiation 1 14400 < th dose dependent sin 23 NA
830 51.49 radiation 20 14400 < th dose dependent rect. 4 2
837 51.50 humidity 90 43200 > th dose independent rect. 22 1
862 51.51 humidity 80 43200 > th dose dependent sin 2 NA
885 51.53 radiation 20 14400 < th dose dependent rect. 22 8
903 51.56 humidity 80 43200 < th dose independent rect. 12 1
913 51.57 radiation 40 14400 < th dose independent rect. 20 13
943 51.60 radiation 40 14400 < th dose independent rect. 6 3
951 51.60 humidity 90 43200 > th dose dependent rect. 19 3
962 51.62 radiation 40 14400 < th dose independent rect. 22 11
965 51.62 humidity 90 43200 > th dose independent rect. 19 19
999 51.66 radiation 1 14400 < th dose dependent rect. 13 8