BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0429000 Os05g0429000|AK109617
(587 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0429000 Similar to Hydroxymethyltransferase 987 0.0
Os01g0874900 Similar to Hydroxymethyltransferase 832 0.0
Os12g0409000 Similar to Hydroxymethyltransferase 585 e-167
AK109000 568 e-162
Os03g0738400 Similar to Serine hydroxymethyltransferase, cy... 485 e-137
AK111207 449 e-126
Os11g0455800 Similar to Hydroxymethyltransferase 309 3e-84
>Os05g0429000 Similar to Hydroxymethyltransferase
Length = 587
Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/587 (84%), Positives = 496/587 (84%)
Query: 1 MLDXXXXXXXXXXXXXMDHRPDLSLALHXXXXXXXXXXXXXXXXXXXXXXXXXXRFSLMG 60
MLD MDHRPDLSLALH RFSLMG
Sbjct: 1 MLDRATGGRRRAAGEGMDHRPDLSLALHPPPPPEGSSAAAAEEVGEEEAEGGEGRFSLMG 60
Query: 61 QPLFLKXXXXXXXXXXXXXGVGXXXXXXXXXXXXXXXXXXXLSPXXXXXXXXXXXXXXXX 120
QPLFLK GVG LSP
Sbjct: 61 QPLFLKRPRPRPPRPPRARGVGDDVDVDVDDDSSPCCSSSCLSPAAKRRAAAGGLEARRA 120
Query: 121 XXXXWGCQPLTEADPDVHELMERERRRQAGGVELIASENYACRAVLDALGSHLTNKYSEG 180
WGCQPLTEADPDVHELMERERRRQAGGVELIASENYACRAVLDALGSHLTNKYSEG
Sbjct: 121 AVRAWGCQPLTEADPDVHELMERERRRQAGGVELIASENYACRAVLDALGSHLTNKYSEG 180
Query: 181 LPGARYYCGNQHIDAIERLCCDRALAAFGLDPSRWGVNVQPYSCTSANFAVYTGLLLPND 240
LPGARYYCGNQHIDAIERLCCDRALAAFGLDPSRWGVNVQPYSCTSANFAVYTGLLLPND
Sbjct: 181 LPGARYYCGNQHIDAIERLCCDRALAAFGLDPSRWGVNVQPYSCTSANFAVYTGLLLPND 240
Query: 241 RIMGLDSPSGGHVSHGYYTPSGKKVSGASIFFENLSYRVNPHTGYIDYDKVEEKAVDFHP 300
RIMGLDSPSGGHVSHGYYTPSGKKVSGASIFFENLSYRVNPHTGYIDYDKVEEKAVDFHP
Sbjct: 241 RIMGLDSPSGGHVSHGYYTPSGKKVSGASIFFENLSYRVNPHTGYIDYDKVEEKAVDFHP 300
Query: 301 KILICGASSYPRDWDYARMRLVADKCGAVLMCDMAQISGLVAAKECRNPFDYCDIVTSTT 360
KILICGASSYPRDWDYARMRLVADKCGAVLMCDMAQISGLVAAKECRNPFDYCDIVTSTT
Sbjct: 301 KILICGASSYPRDWDYARMRLVADKCGAVLMCDMAQISGLVAAKECRNPFDYCDIVTSTT 360
Query: 361 HKSLRGPRGGIIFFRKGKNLRKRVGSLTQVVENDQYDFEDRINFAVFPSMQGGPHNNHIA 420
HKSLRGPRGGIIFFRKGKNLRKRVGSLTQVVENDQYDFEDRINFAVFPSMQGGPHNNHIA
Sbjct: 361 HKSLRGPRGGIIFFRKGKNLRKRVGSLTQVVENDQYDFEDRINFAVFPSMQGGPHNNHIA 420
Query: 421 ALAIALKQVAMPEFKAYIQQVKKNAQALAMALLRRKCRLVTGGTDNHLMLWDLRTFGLTG 480
ALAIALKQVAMPEFKAYIQQVKKNAQALAMALLRRKCRLVTGGTDNHLMLWDLRTFGLTG
Sbjct: 421 ALAIALKQVAMPEFKAYIQQVKKNAQALAMALLRRKCRLVTGGTDNHLMLWDLRTFGLTG 480
Query: 481 KNFEKVCEACHISLNKTPIYGDNGSISPGGVRIGTPAMTTRGCLESDFEIMAEFLLRAAH 540
KNFEKVCEACHISLNKTPIYGDNGSISPGGVRIGTPAMTTRGCLESDFEIMAEFLLRAAH
Sbjct: 481 KNFEKVCEACHISLNKTPIYGDNGSISPGGVRIGTPAMTTRGCLESDFEIMAEFLLRAAH 540
Query: 541 IASIVLKEHGRLQKDFLKGLENNNDIIELRNQVETFALQFAMPGFDV 587
IASIVLKEHGRLQKDFLKGLENNNDIIELRNQVETFALQFAMPGFDV
Sbjct: 541 IASIVLKEHGRLQKDFLKGLENNNDIIELRNQVETFALQFAMPGFDV 587
>Os01g0874900 Similar to Hydroxymethyltransferase
Length = 600
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/463 (84%), Positives = 424/463 (91%), Gaps = 1/463 (0%)
Query: 125 WGCQPLTEADPDVHELMERERRRQAGGVELIASENYACRAVLDALGSHLTNKYSEGLPGA 184
WG Q L EADPDVH LME ER RQ G+ELIASEN+ CRAVL+ALGSHLTNKYSEG PGA
Sbjct: 139 WGNQALAEADPDVHALMELERDRQVRGIELIASENFVCRAVLEALGSHLTNKYSEGHPGA 198
Query: 185 RYYCGNQHIDAIERLCCDRALAAFGLDPSRWGVNVQPYSCTSANFAVYTGLLLPNDRIMG 244
RYY GNQHID IERLC +RALAAFGLDP+ WGVNVQPYSCTSAN AVYTGLLLP DRIMG
Sbjct: 199 RYYGGNQHIDGIERLCHERALAAFGLDPACWGVNVQPYSCTSANLAVYTGLLLPKDRIMG 258
Query: 245 LDSPSGGHVSHGYYTPSGKKVSGASIFFENLSYRVNPHTGYIDYDKVEEKAVDFHPKILI 304
L+ PSGGHVSHGYYTPSGKKVSGASIFFE+LSY+VNP TGYIDYDK+EE+A+DFHPKILI
Sbjct: 259 LEPPSGGHVSHGYYTPSGKKVSGASIFFESLSYKVNPQTGYIDYDKLEERAMDFHPKILI 318
Query: 305 CGASSYPRDWDYARMRLVADKCGAVLMCDMAQISGLVAAKECRNPFDYCDIVTSTTHKSL 364
CG SSYPR+WD+ARMRL+ADKCGAVLMCDMA ISGLVAAKECR+PFDYCD+VTSTTHK+L
Sbjct: 319 CGGSSYPREWDFARMRLIADKCGAVLMCDMAHISGLVAAKECRSPFDYCDVVTSTTHKNL 378
Query: 365 RGPRGGIIFFRKGKNLRKRVGSLTQVVENDQYDFEDRINFAVFPSMQGGPHNNHIAALAI 424
RGPRGGIIFFR+GKNLR+R GS +Q END YDFEDRINFAVFPSMQGGPHNNHIAALAI
Sbjct: 379 RGPRGGIIFFRRGKNLRRRTGSFSQADEND-YDFEDRINFAVFPSMQGGPHNNHIAALAI 437
Query: 425 ALKQVAMPEFKAYIQQVKKNAQALAMALLRRKCRLVTGGTDNHLMLWDLRTFGLTGKNFE 484
LKQVA PE+KAYI QVKKNAQALA ALLRRKCRLVTGGTDNHL+LWDLR GLTGKNFE
Sbjct: 438 TLKQVATPEYKAYIIQVKKNAQALASALLRRKCRLVTGGTDNHLVLWDLRNLGLTGKNFE 497
Query: 485 KVCEACHISLNKTPIYGDNGSISPGGVRIGTPAMTTRGCLESDFEIMAEFLLRAAHIASI 544
KVCEACHIS+NK PIYGDNGSISPGGVRIGTPAMTTRGCLE DFE++A+FL+RA IAS
Sbjct: 498 KVCEACHISINKMPIYGDNGSISPGGVRIGTPAMTTRGCLEDDFEVIADFLIRATQIASN 557
Query: 545 VLKEHGRLQKDFLKGLENNNDIIELRNQVETFALQFAMPGFDV 587
++KEHG++QK+FL+GL+NN DIIELRNQVE FA QFAMPGFDV
Sbjct: 558 LMKEHGKMQKEFLRGLQNNKDIIELRNQVENFASQFAMPGFDV 600
>Os12g0409000 Similar to Hydroxymethyltransferase
Length = 462
Score = 585 bits (1509), Expect = e-167, Method: Compositional matrix adjust.
Identities = 280/436 (64%), Positives = 338/436 (77%), Gaps = 5/436 (1%)
Query: 152 VELIASENYACRAVLDALGSHLTNKYSEGLPGARYYCGNQHIDAIERLCCDRALAAFGLD 211
VELIASEN+ AV++ALGS LTNKYSEG+PG+RYY GN+ ID +E LC RALAAF LD
Sbjct: 25 VELIASENFTSLAVMEALGSPLTNKYSEGMPGSRYYGGNEVIDEVEELCRARALAAFHLD 84
Query: 212 PSRWGVNVQPYSCTSANFAVYTGLLLPNDRIMGLDSPSGGHVSHGYYTPSGKKVSGASIF 271
P WGVNVQPYS + ANFA YTGLL P++RIMGLD PSGGH++HGYYT GKK+S SI+
Sbjct: 85 PEAWGVNVQPYSGSPANFAAYTGLLQPHERIMGLDLPSGGHLTHGYYTAGGKKISATSIY 144
Query: 272 FENLSYRVNPHTGYIDYDKVEEKAVDFHPKILICGASSYPRDWDYARMRLVADKCGAVLM 331
FE+L Y+V+ TGY+DYDK+EEKA+DF PK++ICG S+YPRDWDYAR R +ADKCGA+L+
Sbjct: 145 FESLPYKVSSETGYVDYDKLEEKAMDFRPKLIICGGSAYPRDWDYARFRAIADKCGAMLL 204
Query: 332 CDMAQISGLVAAKECRNPFDYCDIVTSTTHKSLRGPRGGIIFFRKGKNLRKRVGSLTQVV 391
CDMA ISGLVAA+E NPF Y D+VT+TTHKSLRGPR G+IF+RKG K+
Sbjct: 205 CDMAHISGLVAAQEAANPFQYSDVVTTTTHKSLRGPRSGMIFYRKGLKPPKK-----GQP 259
Query: 392 ENDQYDFEDRINFAVFPSMQGGPHNNHIAALAIALKQVAMPEFKAYIQQVKKNAQALAMA 451
E YD+EDRINFAVFPS+QGGPHN+ IAALA+ LKQ P FK+YI+QVK NA AL
Sbjct: 260 EGALYDYEDRINFAVFPSLQGGPHNHQIAALAVGLKQTMSPGFKSYIKQVKANAVALGNH 319
Query: 452 LLRRKCRLVTGGTDNHLMLWDLRTFGLTGKNFEKVCEACHISLNKTPIYGDNGSISPGGV 511
L+ + +LVT GT+NHL+LWDLR GLTG EKVC+ C I+LNK ++GD+ ++SPGGV
Sbjct: 320 LMSKGYKLVTDGTENHLVLWDLRPLGLTGNKVEKVCDLCSITLNKNAVFGDSSAMSPGGV 379
Query: 512 RIGTPAMTTRGCLESDFEIMAEFLLRAAHIASIVLKEHGRLQKDFLKGLENNNDIIELRN 571
RIGTPAMT+RG +E DF +AEFL +A I V KE G+L K F +GLENN DI +LR
Sbjct: 380 RIGTPAMTSRGLVEEDFVQIAEFLHQAVTICLDVQKERGKLLKYFNEGLENNKDIEDLRA 439
Query: 572 QVETFALQFAMPGFDV 587
+VE FA F MPGF V
Sbjct: 440 EVEKFATSFEMPGFRV 455
>AK109000
Length = 493
Score = 568 bits (1464), Expect = e-162, Method: Compositional matrix adjust.
Identities = 268/460 (58%), Positives = 343/460 (74%), Gaps = 3/460 (0%)
Query: 128 QPLTEADPDVHELMERERRRQAGGVELIASENYACRAVLDALGSHLTNKYSEGLPGARYY 187
+ L EADP+++ +++ E+ RQ G+ELIASEN+ R VL+ALGS +TNKYSEG PGARYY
Sbjct: 33 KSLKEADPEIYGIIQDEKARQWKGIELIASENFTSRPVLEALGSCMTNKYSEGQPGARYY 92
Query: 188 CGNQHIDAIERLCCDRALAAFGLDPSRWGVNVQPYSCTSANFAVYTGLLLPNDRIMGLDS 247
GN+HID E LC RAL AF LDP+ WGVNVQPYS + ANFA YT LL P+DRIMGL+
Sbjct: 93 GGNEHIDRAELLCKKRALEAFSLDPAAWGVNVQPYSGSPANFAAYTALLQPHDRIMGLER 152
Query: 248 PSGGHVSHGYYTPSGKKVSGASIFFENLSYRVNPHTGYIDYDKVEEKAVDFHPKILICGA 307
PSGGH++HGYYT + KK+S SIFFE+L Y++NP TG++DYDK+EEKA+++ PK++ICG
Sbjct: 153 PSGGHLTHGYYTGT-KKISATSIFFESLPYKLNPQTGFVDYDKLEEKALEYRPKLIICGG 211
Query: 308 SSYPRDWDYARMRLVADKCGAVLMCDMAQISGLVAAKECRNPFDYCDIVTSTTHKSLRGP 367
S+Y R+WDY R R +ADK GA L+ DMA ISGLVAA +PF+Y DIVT+TTHKSLRGP
Sbjct: 212 SAYAREWDYKRFRQIADKVGAYLLVDMAHISGLVAAGVVDSPFEYADIVTTTTHKSLRGP 271
Query: 368 RGGIIFFRKGKNLRKRVGSLTQVVENDQYDFEDRINFAVFPSMQGGPHNNHIAALAIALK 427
R G+IF RKG R+ E +YD+E +I+FAVFPS+QGGPHN+ IAALA+ALK
Sbjct: 272 RAGMIFMRKGPKPADRLAKGEP--EGTEYDYESKIDFAVFPSLQGGPHNHQIAALAVALK 329
Query: 428 QVAMPEFKAYIQQVKKNAQALAMALLRRKCRLVTGGTDNHLMLWDLRTFGLTGKNFEKVC 487
A EFKAY +QV N++AL AL + +LVT GTDNHL+LWDLR G+TG EK C
Sbjct: 330 HAASEEFKAYQRQVVANSRALGEALKKHGHKLVTDGTDNHLLLWDLRGEGITGAKMEKAC 389
Query: 488 EACHISLNKTPIYGDNGSISPGGVRIGTPAMTTRGCLESDFEIMAEFLLRAAHIASIVLK 547
+ HI+LNK + GD +++PGGVRIGTPAMT+RG E+DFE +AEFL +A V
Sbjct: 390 DEAHITLNKNAVVGDVSAMNPGGVRIGTPAMTSRGLTEADFEKVAEFLHEVLQVAKEVQA 449
Query: 548 EHGRLQKDFLKGLENNNDIIELRNQVETFALQFAMPGFDV 587
HG+L KD++ G+ N + E+R++VE FA F+MPG+ V
Sbjct: 450 SHGKLLKDWIVGITGNAKLAEIRSRVEAFASSFSMPGYAV 489
>Os03g0738400 Similar to Serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1)
(Serine methylase) (Glycine hydroxymethyltransferase)
(SHMT)
Length = 513
Score = 485 bits (1248), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/470 (51%), Positives = 324/470 (68%), Gaps = 15/470 (3%)
Query: 125 WGCQ---PLTEADPDVHELMERERRRQAGGVELIASENYACRAVLDALGSHLTNKYSEGL 181
W Q PL E DP++ +++E E+ RQ G+ELI SEN+ +V+ A+GS +TNKYSEG
Sbjct: 43 WPKQLNAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGY 102
Query: 182 PGARYYCGNQHIDAIERLCCDRALAAFGLDPSRWGVNVQPYSCTSANFAVYTGLLLPNDR 241
PGARYY GN++ID E LC RAL AF LDP++WGVNVQP S + ANF VYT LL P++R
Sbjct: 103 PGARYYGGNEYIDMAESLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKPHER 162
Query: 242 IMGLDSPSGGHVSHGYYTPSGKKVSGASIFFENLSYRVNPHTGYIDYDKVEEKAVDFHPK 301
IM LD P GGH+SHGY T + KK+S SIFFE + YR++ TG IDYD++E+ AV F PK
Sbjct: 163 IMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLDESTGLIDYDQMEKSAVLFRPK 221
Query: 302 ILICGASSYPRDWDYARMRLVADKCGAVLMCDMAQISGLVAAKECRNPFDYCDIVTSTTH 361
+++ GAS+Y R +DY RMR V DK A+L+ DMA ISGLVAA +PFDY D+VT+TTH
Sbjct: 222 LIVAGASAYARLYDYDRMRKVCDKQKAILLADMAHISGLVAAGVVPSPFDYADVVTTTTH 281
Query: 362 KSLRGPRGGIIFFRKGKNLRKRVGSLTQVVENDQYDFEDRINFAVFPSMQGGPHNNHIAA 421
KSLRGPRG +IF+RKG V + + + YDFED+IN AVFP +QGGPHN+ I
Sbjct: 282 KSLRGPRGAMIFYRKG------VKGVNKQGKEVMYDFEDKINAAVFPGLQGGPHNHTITG 335
Query: 422 LAIALKQVAMPEFKAYIQQVKKNAQALAMALLRRKCRLVTGGTDNHLMLWDLRTFGLTGK 481
LA+ALKQ PE++AY +QV N A +L + LV+GGTDNHL+L +L++ G+ G
Sbjct: 336 LAVALKQATTPEYRAYQEQVMSNCAKFAQSLTAKGYELVSGGTDNHLVLVNLKSKGIDGS 395
Query: 482 NFEKVCEACHISLNKTPIYGDNGSISPGGVRIGTPAMTTRGCLESDFEIMAEFLLRAAHI 541
EKV E HI+ NK + GD ++ PGG+R+GTPA+T+RG +E DF +A+F A ++
Sbjct: 396 RVEKVLENVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVADFFDAAVNL 455
Query: 542 ASIVLKEHGRLQ-KDFLKGLENN----NDIIELRNQVETFALQFAMPGFD 586
A V G + KDF+ L+++ ++I +LR+ VE +A QF GF+
Sbjct: 456 ALKVKAAAGGTKLKDFVATLQSDSNIQSEIAKLRHDVEEYAKQFPTIGFE 505
>AK111207
Length = 471
Score = 449 bits (1154), Expect = e-126, Method: Compositional matrix adjust.
Identities = 234/462 (50%), Positives = 303/462 (65%), Gaps = 13/462 (2%)
Query: 128 QPLTEADPDVHELMERERRRQAGGVELIASENYACRAVLDALGSHLTNKYSEGLPGARYY 187
+ L + D +V ++MERE +RQ + LIASEN RAV DALGS ++NKYSEG PGARYY
Sbjct: 16 KSLVDTDNEVAQIMEREIQRQRESILLIASENVTSRAVFDALGSPMSNKYSEGYPGARYY 75
Query: 188 CGNQHIDAIERLCCDRALAAFGLDPSRWGVNVQPYSCTSANFAVYTGLLLPNDRIMGLDS 247
GN+HIDAIE LC RAL AFGLD +WGVNVQ S + AN VY ++ P+DR+MGLD
Sbjct: 76 GGNEHIDAIELLCQKRALEAFGLDAEKWGVNVQCLSGSPANLQVYQAIMRPHDRLMGLDL 135
Query: 248 PSGGHVSHGYYTPSGKKVSGASIFFENLSYRVNPHTGYIDYDKVEEKAVDFHPKILICGA 307
P GGH+SHGY TP +K+S S +FE YRVN TG IDYD++E+ A+ + PK+L+ G
Sbjct: 136 PHGGHLSHGYQTPQ-RKISAVSTYFETFPYRVNLETGLIDYDQLEQNALMYRPKVLVAGT 194
Query: 308 SSYPRDWDYARMRLVADKCGAVLMCDMAQISGLVAAKECRNPFDYCDIVTSTTHKSLRGP 367
S+Y R DYARMR +ADK G LM DMA ISGL+AA ++PF Y DIVT+TTHKSLRGP
Sbjct: 195 SAYCRGIDYARMREIADKVGCYLMMDMAHISGLIAAGVNKSPFPYADIVTTTTHKSLRGP 254
Query: 368 RGGIIFFRKGKNLRKRVGSLTQVVENDQYDFEDRINFAVFPSMQGGPHNNHIAALAIALK 427
RG +IFFRKG +RK + + + YD E INF+VFP QGGPHN+ I ALA+ALK
Sbjct: 255 RGAMIFFRKG--VRK---TDAKTGKETLYDLEGPINFSVFPGHQGGPHNHTITALAVALK 309
Query: 428 QVAMPEFKAYIQQVKKNAQALAMALLRRKCRLVTGGTDNHLMLWDLRTFGLTGKNFEKVC 487
Q +F Y QQV KNA+ L +LVT GTDNH++L DL+ F L G E V
Sbjct: 310 QAQSDDFTLYQQQVIKNAKQLENTFKELGFKLVTDGTDNHMVLIDLKPFSLDGARVEAVL 369
Query: 488 EACHISLNKTPIYGDNGSISPGGVRIGTPAMTTRGCLESDFEIMAEFLLRAAHIASIVL- 546
E +I+ NK GD +++P G+RIG PAMT+RG E+DF +A ++ I V
Sbjct: 370 EQVNIACNKNTTPGDKSALTPMGIRIGAPAMTSRGLGEADFAKIANYINTCIQICKKVQA 429
Query: 547 ---KEHGRLQKDFLKGLENN--NDIIELRNQVETFALQFAMP 583
KE+ +L KDF + +I +L+ ++ +A+ F +P
Sbjct: 430 ELPKENNKL-KDFKAKVAGGEVEEINQLKKEIAAWAVTFPLP 470
>Os11g0455800 Similar to Hydroxymethyltransferase
Length = 256
Score = 309 bits (792), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 148/254 (58%), Positives = 187/254 (73%), Gaps = 5/254 (1%)
Query: 334 MAQISGLVAAKECRNPFDYCDIVTSTTHKSLRGPRGGIIFFRKGKNLRKRVGSLTQVVEN 393
MA ISGLVAA+E NPF+YCD+VT+TTHKSLRGPR G+IF+RKG K+ E
Sbjct: 1 MAHISGLVAAQEAANPFEYCDVVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQP-----EG 55
Query: 394 DQYDFEDRINFAVFPSMQGGPHNNHIAALAIALKQVAMPEFKAYIQQVKKNAQALAMALL 453
YD+ED+INFAVFPS+QGGPHN+ IAALA+AL+Q P FKAY +QVK NA A+ L+
Sbjct: 56 AVYDYEDKINFAVFPSLQGGPHNHQIAALAVALQQTMTPGFKAYAKQVKANAVAIGKYLM 115
Query: 454 RRKCRLVTGGTDNHLMLWDLRTFGLTGKNFEKVCEACHISLNKTPIYGDNGSISPGGVRI 513
+ ++VT GT+NHL+LWDLR GLTG EK+C+ C I+LNK ++GD+ +++PGGVRI
Sbjct: 116 SKGYKMVTDGTENHLVLWDLRPLGLTGNKVEKMCDLCSITLNKNAVFGDSSALAPGGVRI 175
Query: 514 GTPAMTTRGCLESDFEIMAEFLLRAAHIASIVLKEHGRLQKDFLKGLENNNDIIELRNQV 573
GTPAMT+RG +E DFE + EFL +A I + KEHG+L KDF KGL NN DI L+ +V
Sbjct: 176 GTPAMTSRGLVEKDFEQIGEFLHQAVTICLNIQKEHGKLLKDFSKGLVNNKDIENLKLEV 235
Query: 574 ETFALQFAMPGFDV 587
E FA F MPGF +
Sbjct: 236 EKFATSFDMPGFTL 249
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,375,758
Number of extensions: 710872
Number of successful extensions: 1497
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1485
Number of HSP's successfully gapped: 7
Length of query: 587
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 481
Effective length of database: 11,501,117
Effective search space: 5532037277
Effective search space used: 5532037277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)