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Os12g0409000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Hydroxymethyltransferase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.0227) R2 : 0.68
β1 : 1.67 (0.0829) R2dD : 0.296 R2D : 0.295
β2 : 1.36 (0.0589) R2dC : 0.377 R2C : 0.368
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.105 (0.0483) R2dN8 : 0.00439 R2N8 : 0.0149
σ : 0.426
deviance : 82.66
__
_____
C
peak time of C : 18.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
65.12 0.379 11.8 1.96 1.38 1.1 0.0645 -0.32 0.0718 18.3 23.64 14 -- --
65.17 0.379 11.8 1.92 1.37 1.16 0.0958 -- 0.06 18.3 23.4 14 -- --
65.06 0.379 11.8 1.95 1.37 1.12 -- -0.285 0.0657 18.3 23.4 13 -- --
65.19 0.379 11.8 1.92 1.37 1.16 -- -- 0.058 18.3 23.31 13 -- --
162.47 0.597 11.7 1.9 -- 1.05 -- -0.368 0.0225 -- 23.21 4 -- --
82.65 0.426 11.8 1.67 1.36 -- -0.0788 -- -0.104 18.8 -- -- -- --
82.66 0.426 11.8 1.67 1.36 -- -- -- -0.105 18.8 -- -- -- --
162.68 0.597 11.7 1.86 -- 1.09 -- -- 0.0145 -- 23.2 4 -- --
154.15 0.581 11.8 -- 1.34 0.409 -- -- -0.243 18.7 23.31 13 -- --
179.51 0.626 11.8 1.64 -- -- -- -- -0.131 -- -- -- -- --
156.51 0.585 11.8 -- 1.34 -- -- -- -0.291 18.9 -- -- -- --
231.5 0.709 11.8 -- -- -1.09 -- -- -0.441 -- 49.34 434 -- --
250.8 0.739 11.8 -- -- -- -- -- -0.313 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.66 temperature 20.0 270 > th dose independent rect. 15 16
12 62.18 wind 9.0 43200 > th dose independent rect. 18 14
14 62.19 wind 9.0 43200 > th dose dependent rect. 18 13
15 62.20 temperature 20.0 270 > th dose independent rect. 12 21
17 62.21 wind 9.0 43200 < th dose independent rect. 18 14
18 62.21 temperature 30.0 10 < th dose dependent sin 10 NA
20 62.27 radiation 1.0 14400 < th dose independent rect. 18 12
21 62.30 wind 9.0 43200 > th dose independent rect. 18 9
24 62.43 radiation 1.0 4320 < th dose dependent rect. 18 11
30 62.51 temperature 10.0 10 > th dose dependent sin 10 NA
32 62.56 wind 9.0 43200 < th dose independent rect. 18 6
34 62.57 wind 9.0 43200 < th dose independent rect. 18 9
36 62.58 wind 9.0 43200 > th dose dependent rect. 18 9
48 62.69 radiation 1.0 4320 < th dose independent rect. 18 1
52 62.73 radiation 1.0 4320 < th dose independent rect. 18 4
55 62.75 wind 7.0 43200 > th dose independent rect. 6 1
77 62.85 temperature 30.0 720 < th dose dependent rect. 18 9
79 62.89 radiation 30.0 14400 > th dose independent rect. 16 16
80 62.89 radiation 1.0 4320 < th dose dependent rect. 18 1
81 62.89 precipitation 0.1 43200 > th dose dependent rect. 20 2
85 62.92 radiation 1.0 4320 < th dose dependent rect. 18 4
99 63.02 radiation 1.0 4320 < th dose dependent rect. 18 15
102 63.03 temperature 15.0 270 > th dose dependent rect. 16 15
110 63.09 radiation 30.0 14400 > th dose independent rect. 7 1
127 63.14 radiation 1.0 14400 > th dose independent rect. 18 12
145 63.31 radiation 1.0 4320 > th dose independent rect. 18 1
172 63.40 radiation 1.0 4320 < th dose independent rect. 18 15
197 63.54 temperature 30.0 720 < th dose dependent sin 14 NA
201 63.58 wind 7.0 43200 < th dose independent rect. 6 1
203 63.59 temperature 15.0 720 > th dose dependent rect. 17 7
214 63.66 wind 7.0 43200 > th dose independent rect. 9 1
218 63.67 radiation 1.0 4320 > th dose independent rect. 18 15
219 63.67 temperature 10.0 720 > th dose dependent sin 14 NA
224 63.69 precipitation 0.1 43200 < th dose independent rect. 20 2
226 63.69 precipitation 0.1 43200 < th dose dependent rect. 20 2
234 63.73 precipitation 0.1 43200 > th dose independent rect. 20 2
246 63.78 temperature 25.0 10 < th dose dependent rect. 14 18
290 63.91 wind 7.0 43200 > th dose independent rect. 5 5
303 63.97 temperature 25.0 10 < th dose dependent rect. 18 14
314 64.00 wind 7.0 43200 < th dose independent rect. 9 1
326 64.01 temperature 25.0 10 < th dose dependent rect. 12 22
333 64.06 radiation 1.0 4320 < th dose dependent rect. 24 6
334 64.06 temperature 25.0 10 < th dose dependent rect. 12 20
344 64.08 temperature 25.0 10 < th dose dependent rect. 22 10
347 64.09 radiation 30.0 14400 > th dose dependent rect. 16 16
363 64.10 temperature 25.0 10 < th dose dependent rect. 22 12
366 64.11 radiation 1.0 4320 < th dose dependent rect. 3 3
368 64.11 radiation 1.0 4320 < th dose dependent rect. 21 9
375 64.13 atmosphere 995.0 43200 < th dose independent rect. 7 8
377 64.13 wind 5.0 43200 > th dose independent rect. 6 11
386 64.15 wind 5.0 43200 < th dose independent rect. 6 11
405 64.17 radiation 1.0 4320 < th dose dependent rect. 24 9
410 64.18 wind 7.0 43200 > th dose dependent rect. 18 21
413 64.19 radiation 1.0 4320 < th dose dependent sin 9 NA
414 64.19 radiation 1.0 4320 < th dose dependent rect. 2 7
417 64.19 radiation 1.0 4320 < th dose dependent rect. 21 12
463 64.29 wind 7.0 43200 < th dose independent rect. 5 5
481 64.32 atmosphere 995.0 43200 < th dose dependent rect. 14 1
495 64.35 wind 5.0 43200 < th dose independent rect. 24 18
496 64.35 atmosphere 995.0 43200 < th dose dependent rect. 13 3
508 64.37 wind 5.0 43200 > th dose independent sin 0 NA
509 64.37 wind 5.0 43200 < th dose independent sin 1 NA
523 64.39 wind 5.0 43200 > th dose independent rect. 24 18
526 64.39 wind 5.0 43200 > th dose dependent rect. 6 10
536 64.40 wind 5.0 43200 > th dose dependent rect. 23 18
541 64.41 wind 5.0 43200 > th dose independent rect. 24 20
580 64.46 wind 5.0 43200 > th dose dependent rect. 23 22
589 64.48 wind 5.0 43200 > th dose independent rect. 4 17
595 64.49 temperature 20.0 90 < th dose independent sin 10 NA
597 64.49 atmosphere 995.0 43200 > th dose independent rect. 7 8
645 64.53 wind 5.0 43200 < th dose independent rect. 4 17
670 64.54 temperature 20.0 90 < th dose independent rect. 15 20
671 64.54 wind 5.0 43200 > th dose dependent sin 2 NA
673 64.54 humidity 90.0 14400 > th dose dependent rect. 23 2
687 64.55 wind 5.0 43200 < th dose independent rect. 2 19
757 64.62 wind 9.0 43200 > th dose dependent sin 12 NA
767 64.63 wind 5.0 43200 > th dose dependent rect. 5 16
769 64.63 wind 5.0 43200 > th dose dependent rect. 5 22
797 64.66 wind 9.0 43200 < th dose independent rect. 18 21
817 64.67 wind 5.0 43200 > th dose dependent rect. 13 23
819 64.68 humidity 90.0 14400 > th dose dependent rect. 22 4
860 64.72 wind 5.0 43200 > th dose independent rect. 5 20
873 64.73 temperature 20.0 90 < th dose independent rect. 22 13
877 64.73 wind 5.0 43200 > th dose independent rect. 11 22
932 64.78 wind 5.0 43200 < th dose independent rect. 5 20
933 64.78 wind 5.0 43200 < th dose independent rect. 11 22
984 64.82 humidity 90.0 43200 < th dose independent rect. 5 3
992 64.82 temperature 20.0 30 > th dose independent rect. 3 23