Os11g0455800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hydroxymethyltransferase.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0455800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Hydroxymethyltransferase.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.05 | 0.322 | 13.8 | 0.0412 | 0.0662 | -0.503 | 1.3 | 0.186 | -0.114 | 9.04 | 21.49 | 1746 | -- | -- |
| 47.13 | 0.32 | 13.8 | -0.00897 | 0.0731 | -0.517 | 1.31 | -- | -0.123 | 9 | 21.5 | 1712 | -- | -- |
| 52.14 | 0.336 | 13.8 | 0.0427 | 0.148 | -0.534 | -- | 0.0589 | -0.118 | 5.32 | 21.4 | 1491 | -- | -- |
| 52.15 | 0.336 | 13.8 | 0.0242 | 0.15 | -0.533 | -- | -- | -0.129 | 5.24 | 21.4 | 1490 | -- | -- |
| 53.02 | 0.339 | 13.8 | 0.0738 | -- | -0.519 | -- | 0.121 | -0.117 | -- | 21.38 | 1854 | -- | -- |
| 54.84 | 0.347 | 13.8 | -0.235 | 0.0797 | -- | 1.3 | -- | -0.275 | 8.87 | -- | -- | -- | -- |
| 59.9 | 0.362 | 13.8 | -0.196 | 0.138 | -- | -- | -- | -0.277 | 5.44 | -- | -- | -- | -- |
| 53.05 | 0.339 | 13.8 | 0.0471 | -- | -0.528 | -- | -- | -0.122 | -- | 21.32 | 1862 | -- | -- |
| 52.17 | 0.336 | 13.8 | -- | 0.152 | -0.524 | -- | -- | -0.134 | 5.21 | 21.4 | 1491 | -- | -- |
| 60.89 | 0.365 | 13.8 | -0.192 | -- | -- | -- | -- | -0.273 | -- | -- | -- | -- | -- |
| 60.91 | 0.365 | 13.8 | -- | 0.135 | -- | -- | -- | -0.255 | 5.5 | -- | -- | -- | -- |
| 53.1 | 0.339 | 13.8 | -- | -- | -0.511 | -- | -- | -0.131 | -- | 21.3 | 1862 | -- | -- |
| 61.86 | 0.367 | 13.8 | -- | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 18 |
| 2 | 44.74 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 20 |
| 6 | 44.91 | temperature | 15 | 90 | > th | dose dependent | rect. | 13 | 16 |
| 10 | 44.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 10 |
| 11 | 44.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 21 |
| 23 | 45.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 9 |
| 58 | 45.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 20 |
| 101 | 46.24 | temperature | 30 | 10 | < th | dose dependent | sin | 16 | NA |
| 103 | 46.26 | temperature | 20 | 30 | > th | dose independent | rect. | 13 | 16 |
| 113 | 46.31 | temperature | 10 | 10 | > th | dose dependent | sin | 15 | NA |
| 147 | 46.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 167 | 46.54 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 14 |
| 170 | 46.55 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 18 |
| 177 | 46.56 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 217 | 46.69 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 12 |
| 227 | 46.71 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 276 | 46.80 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 324 | 46.88 | humidity | 60 | 43200 | > th | dose independent | rect. | 21 | 13 |
| 358 | 46.93 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 14 |
| 365 | 46.94 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 451 | 47.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 21 |
| 455 | 47.04 | wind | 1 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 486 | 47.07 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 504 | 47.09 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 512 | 47.10 | humidity | 60 | 43200 | < th | dose independent | sin | 9 | NA |
| 513 | 47.10 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 537 | 47.12 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 551 | 47.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 583 | 47.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 606 | 47.19 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 8 |
| 613 | 47.19 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 21 |
| 617 | 47.20 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 645 | 47.22 | humidity | 60 | 43200 | > th | dose independent | sin | 9 | NA |
| 646 | 47.22 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 668 | 47.23 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 678 | 47.24 | humidity | 60 | 43200 | < th | dose dependent | sin | 7 | NA |
| 726 | 47.26 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 16 |
| 749 | 47.27 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 14 |
| 775 | 47.29 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 969 | 47.40 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 987 | 47.40 | temperature | 10 | 90 | > th | dose dependent | rect. | 24 | 23 |