Os01g0874900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hydroxymethyltransferase.
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Os01g0874900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Hydroxymethyltransferase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.4 | 0.255 | 13.3 | 0.409 | 0.785 | 0.473 | 0.167 | 0.76 | 0.0277 | 9.88 | 20.2 | 411 | -- | -- |
| 30.39 | 0.257 | 13.3 | 0.26 | 0.81 | 0.408 | 0.0435 | -- | -0.0262 | 10 | 20.87 | 636 | -- | -- |
| 29.5 | 0.253 | 13.3 | 0.409 | 0.784 | 0.469 | -- | 0.727 | 0.0275 | 9.86 | 20.2 | 410 | -- | -- |
| 30.38 | 0.257 | 13.3 | 0.26 | 0.813 | 0.407 | -- | -- | -0.0199 | 10 | 20.9 | 636 | -- | -- |
| 59.23 | 0.36 | 13.3 | 0.369 | -- | 0.478 | -- | 0.444 | 0.012 | -- | 20.2 | 410 | -- | -- |
| 35.5 | 0.279 | 13.3 | 0.415 | 0.75 | -- | 0.0409 | -- | 0.0788 | 10.1 | -- | -- | -- | -- |
| 35.5 | 0.279 | 13.3 | 0.417 | 0.75 | -- | -- | -- | 0.0788 | 10.1 | -- | -- | -- | -- |
| 59.86 | 0.362 | 13.3 | 0.303 | -- | 0.383 | -- | -- | -0.0315 | -- | 22.2 | 3073 | -- | -- |
| 32.2 | 0.264 | 13.3 | -- | 0.798 | 0.446 | -- | -- | -0.0407 | 9.96 | 20.8 | 639 | -- | -- |
| 69.54 | 0.39 | 13.3 | 0.406 | -- | -- | -- | -- | 0.0776 | -- | -- | -- | -- | -- |
| 40.08 | 0.296 | 13.3 | -- | 0.748 | -- | -- | -- | 0.0324 | 10.1 | -- | -- | -- | -- |
| 62.22 | 0.369 | 13.3 | -- | -- | 0.415 | -- | -- | -0.0732 | -- | 22.2 | 3073 | -- | -- |
| 73.89 | 0.401 | 13.3 | -- | -- | -- | -- | -- | 0.0326 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.65 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 19 |
| 4 | 28.86 | temperature | 20.0 | 720 | > th | dose independent | sin | 22 | NA |
| 12 | 29.26 | temperature | 20.0 | 270 | < th | dose independent | rect. | 6 | 22 |
| 14 | 29.28 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 11 |
| 15 | 29.30 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 9 |
| 16 | 29.30 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 17 | 29.30 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 21 | 29.39 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 23 |
| 24 | 29.43 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 11 |
| 46 | 29.62 | temperature | 20.0 | 270 | > th | dose independent | rect. | 10 | 23 |
| 50 | 29.66 | temperature | 20.0 | 720 | < th | dose independent | sin | 21 | NA |
| 58 | 29.71 | temperature | 20.0 | 720 | < th | dose independent | rect. | 7 | 16 |
| 59 | 29.71 | temperature | 30.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 65 | 29.74 | temperature | 20.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 89 | 29.84 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 4 |
| 96 | 29.87 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 10 | 18 |
| 113 | 29.90 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 114 | 29.91 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 23 |
| 135 | 29.96 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 4 |
| 140 | 29.97 | temperature | 10.0 | 720 | > th | dose dependent | sin | 11 | NA |
| 160 | 30.01 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 164 | 30.01 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 201 | 30.05 | temperature | 20.0 | 720 | < th | dose independent | rect. | 13 | 12 |
| 211 | 30.06 | temperature | 20.0 | 720 | < th | dose independent | rect. | 17 | 8 |
| 251 | 30.11 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 270 | 30.13 | temperature | 20.0 | 270 | > th | dose independent | no | NA | NA |
| 275 | 30.14 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 304 | 30.17 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 328 | 30.20 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 336 | 30.21 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 349 | 30.22 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 355 | 30.22 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 361 | 30.23 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 363 | 30.23 | temperature | 20.0 | 720 | > th | dose independent | rect. | 10 | 14 |
| 392 | 30.25 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 20 |
| 405 | 30.26 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 410 | 30.26 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 411 | 30.27 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 420 | 30.27 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 424 | 30.27 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 19 | 9 |
| 428 | 30.28 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 441 | 30.28 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 7 | 16 |
| 468 | 30.30 | temperature | 20.0 | 270 | < th | dose independent | no | NA | NA |
| 474 | 30.30 | temperature | 20.0 | 270 | < th | dose independent | rect. | 13 | 23 |
| 492 | 30.31 | temperature | 20.0 | 270 | < th | dose independent | rect. | 16 | 22 |
| 506 | 30.32 | temperature | 20.0 | 270 | < th | dose independent | sin | 13 | NA |
| 548 | 30.33 | temperature | 20.0 | 270 | < th | dose independent | rect. | 17 | 19 |
| 556 | 30.33 | temperature | 20.0 | 270 | < th | dose independent | rect. | 10 | 23 |
| 636 | 30.37 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 639 | 30.37 | temperature | 20.0 | 270 | < th | dose independent | rect. | 18 | 15 |
| 675 | 30.38 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 765 | 30.42 | temperature | 10.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 788 | 30.43 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 809 | 30.44 | atmosphere | 1000.0 | 14400 | < th | dose dependent | sin | 3 | NA |
| 815 | 30.44 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 6 |
| 830 | 30.45 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 833 | 30.45 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 859 | 30.46 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 880 | 30.46 | temperature | 20.0 | 270 | < th | dose independent | rect. | 23 | 23 |
| 881 | 30.46 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 939 | 30.48 | wind | 7.0 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 952 | 30.48 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 23 | 4 |