BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0874900 Os01g0874900|AK103554
(600 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0874900 Similar to Hydroxymethyltransferase 1099 0.0
Os05g0429000 Similar to Hydroxymethyltransferase 815 0.0
Os12g0409000 Similar to Hydroxymethyltransferase 567 e-161
AK109000 556 e-158
Os03g0738400 Similar to Serine hydroxymethyltransferase, cy... 462 e-130
AK111207 415 e-116
Os11g0455800 Similar to Hydroxymethyltransferase 285 7e-77
>Os01g0874900 Similar to Hydroxymethyltransferase
Length = 600
Score = 1099 bits (2842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/600 (89%), Positives = 539/600 (89%)
Query: 1 MDLSRPESSDLSLGFHSLGHARGHAVTGPLRLFDDMEDAKPEKSVXXXXXXXXXXXXXXX 60
MDLSRPESSDLSLGFHSLGHARGHAVTGPLRLFDDMEDAKPEKSV
Sbjct: 1 MDLSRPESSDLSLGFHSLGHARGHAVTGPLRLFDDMEDAKPEKSVGGGGGGGGGGGEEED 60
Query: 61 XXXXXXQHFSLLGHALCVKRPRRALYXXXXXXXXXXXXXXXXXXXXXXXXXXXLHPAKRQ 120
QHFSLLGHALCVKRPRRALY LHPAKRQ
Sbjct: 61 GEEGGDQHFSLLGHALCVKRPRRALYGGGGGGGAGGGGGGGGEASSCSSSSSSLHPAKRQ 120
Query: 121 ATAERGADLEARRGAVRAWGNQALAEADPDVHALMELERDRQVRGIELIASENFVCRAVL 180
ATAERGADLEARRGAVRAWGNQALAEADPDVHALMELERDRQVRGIELIASENFVCRAVL
Sbjct: 121 ATAERGADLEARRGAVRAWGNQALAEADPDVHALMELERDRQVRGIELIASENFVCRAVL 180
Query: 181 EALGSHLTNKYSEGHPGARYYGGNQHIDGIERLCHERALAAFGLDPACWGVNVQPYSCTS 240
EALGSHLTNKYSEGHPGARYYGGNQHIDGIERLCHERALAAFGLDPACWGVNVQPYSCTS
Sbjct: 181 EALGSHLTNKYSEGHPGARYYGGNQHIDGIERLCHERALAAFGLDPACWGVNVQPYSCTS 240
Query: 241 ANLAVYTGLLLPKDRIMGLEPPSGGHVSHGYYTPSGKKVSGASIFFESLSYKVNPQTGYI 300
ANLAVYTGLLLPKDRIMGLEPPSGGHVSHGYYTPSGKKVSGASIFFESLSYKVNPQTGYI
Sbjct: 241 ANLAVYTGLLLPKDRIMGLEPPSGGHVSHGYYTPSGKKVSGASIFFESLSYKVNPQTGYI 300
Query: 301 DYDKLEERAMDFHPKILICGGSSYPREWDFARMRLIADKCGAVLMCDMAHISGLVAAKEC 360
DYDKLEERAMDFHPKILICGGSSYPREWDFARMRLIADKCGAVLMCDMAHISGLVAAKEC
Sbjct: 301 DYDKLEERAMDFHPKILICGGSSYPREWDFARMRLIADKCGAVLMCDMAHISGLVAAKEC 360
Query: 361 RSPFDYCDVVTSTTHKNLXXXXXXXXXXXXXKNLRRRTGSFSQADENDYDFEDRINFAVF 420
RSPFDYCDVVTSTTHKNL KNLRRRTGSFSQADENDYDFEDRINFAVF
Sbjct: 361 RSPFDYCDVVTSTTHKNLRGPRGGIIFFRRGKNLRRRTGSFSQADENDYDFEDRINFAVF 420
Query: 421 PSMQGGPHNNHIAALAITLKQVATPEYKAYIIQVKKNAQALASALLRRKCRLVTGGTDNH 480
PSMQGGPHNNHIAALAITLKQVATPEYKAYIIQVKKNAQALASALLRRKCRLVTGGTDNH
Sbjct: 421 PSMQGGPHNNHIAALAITLKQVATPEYKAYIIQVKKNAQALASALLRRKCRLVTGGTDNH 480
Query: 481 LVLWDLRNLGLTGKNFEKVCEACHISINKMPIYGDNGSISPGGVRIGTPAMTTRGCLEDD 540
LVLWDLRNLGLTGKNFEKVCEACHISINKMPIYGDNGSISPGGVRIGTPAMTTRGCLEDD
Sbjct: 481 LVLWDLRNLGLTGKNFEKVCEACHISINKMPIYGDNGSISPGGVRIGTPAMTTRGCLEDD 540
Query: 541 FEVIADFLIRATQIASNLMKEHGKMQKEFLRGLQNNKDIIELRNQVENFASQFAMPGFDV 600
FEVIADFLIRATQIASNLMKEHGKMQKEFLRGLQNNKDIIELRNQVENFASQFAMPGFDV
Sbjct: 541 FEVIADFLIRATQIASNLMKEHGKMQKEFLRGLQNNKDIIELRNQVENFASQFAMPGFDV 600
>Os05g0429000 Similar to Hydroxymethyltransferase
Length = 587
Score = 815 bits (2104), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/473 (81%), Positives = 420/473 (88%), Gaps = 1/473 (0%)
Query: 129 LEARRGAVRAWGNQALAEADPDVHALMELERDRQVRGIELIASENFVCRAVLEALGSHLT 188
LEARR AVRAWG Q L EADPDVH LME ER RQ G+ELIASEN+ CRAVL+ALGSHLT
Sbjct: 115 LEARRAAVRAWGCQPLTEADPDVHELMERERRRQAGGVELIASENYACRAVLDALGSHLT 174
Query: 189 NKYSEGHPGARYYGGNQHIDGIERLCHERALAAFGLDPACWGVNVQPYSCTSANLAVYTG 248
NKYSEG PGARYY GNQHID IERLC +RALAAFGLDP+ WGVNVQPYSCTSAN AVYTG
Sbjct: 175 NKYSEGLPGARYYCGNQHIDAIERLCCDRALAAFGLDPSRWGVNVQPYSCTSANFAVYTG 234
Query: 249 LLLPKDRIMGLEPPSGGHVSHGYYTPSGKKVSGASIFFESLSYKVNPQTGYIDYDKLEER 308
LLLP DRIMGL+ PSGGHVSHGYYTPSGKKVSGASIFFE+LSY+VNP TGYIDYDK+EE+
Sbjct: 235 LLLPNDRIMGLDSPSGGHVSHGYYTPSGKKVSGASIFFENLSYRVNPHTGYIDYDKVEEK 294
Query: 309 AMDFHPKILICGGSSYPREWDFARMRLIADKCGAVLMCDMAHISGLVAAKECRSPFDYCD 368
A+DFHPKILICG SSYPR+WD+ARMRL+ADKCGAVLMCDMA ISGLVAAKECR+PFDYCD
Sbjct: 295 AVDFHPKILICGASSYPRDWDYARMRLVADKCGAVLMCDMAQISGLVAAKECRNPFDYCD 354
Query: 369 VVTSTTHKNLXXXXXXXXXXXXXKNLRRRTGSFSQADEND-YDFEDRINFAVFPSMQGGP 427
+VTSTTHK+L KNLR+R GS +Q END YDFEDRINFAVFPSMQGGP
Sbjct: 355 IVTSTTHKSLRGPRGGIIFFRKGKNLRKRVGSLTQVVENDQYDFEDRINFAVFPSMQGGP 414
Query: 428 HNNHIAALAITLKQVATPEYKAYIIQVKKNAQALASALLRRKCRLVTGGTDNHLVLWDLR 487
HNNHIAALAI LKQVA PE+KAYI QVKKNAQALA ALLRRKCRLVTGGTDNHL+LWDLR
Sbjct: 415 HNNHIAALAIALKQVAMPEFKAYIQQVKKNAQALAMALLRRKCRLVTGGTDNHLMLWDLR 474
Query: 488 NLGLTGKNFEKVCEACHISINKMPIYGDNGSISPGGVRIGTPAMTTRGCLEDDFEVIADF 547
GLTGKNFEKVCEACHIS+NK PIYGDNGSISPGGVRIGTPAMTTRGCLE DFE++A+F
Sbjct: 475 TFGLTGKNFEKVCEACHISLNKTPIYGDNGSISPGGVRIGTPAMTTRGCLESDFEIMAEF 534
Query: 548 LIRATQIASNLMKEHGKMQKEFLRGLQNNKDIIELRNQVENFASQFAMPGFDV 600
L+RA IAS ++KEHG++QK+FL+GL+NN DIIELRNQVE FA QFAMPGFDV
Sbjct: 535 LLRAAHIASIVLKEHGRLQKDFLKGLENNNDIIELRNQVETFALQFAMPGFDV 587
>Os12g0409000 Similar to Hydroxymethyltransferase
Length = 462
Score = 567 bits (1461), Expect = e-161, Method: Compositional matrix adjust.
Identities = 271/435 (62%), Positives = 333/435 (76%), Gaps = 4/435 (0%)
Query: 166 IELIASENFVCRAVLEALGSHLTNKYSEGHPGARYYGGNQHIDGIERLCHERALAAFGLD 225
+ELIASENF AV+EALGS LTNKYSEG PG+RYYGGN+ ID +E LC RALAAF LD
Sbjct: 25 VELIASENFTSLAVMEALGSPLTNKYSEGMPGSRYYGGNEVIDEVEELCRARALAAFHLD 84
Query: 226 PACWGVNVQPYSCTSANLAVYTGLLLPKDRIMGLEPPSGGHVSHGYYTPSGKKVSGASIF 285
P WGVNVQPYS + AN A YTGLL P +RIMGL+ PSGGH++HGYYT GKK+S SI+
Sbjct: 85 PEAWGVNVQPYSGSPANFAAYTGLLQPHERIMGLDLPSGGHLTHGYYTAGGKKISATSIY 144
Query: 286 FESLSYKVNPQTGYIDYDKLEERAMDFHPKILICGGSSYPREWDFARMRLIADKCGAVLM 345
FESL YKV+ +TGY+DYDKLEE+AMDF PK++ICGGS+YPR+WD+AR R IADKCGA+L+
Sbjct: 145 FESLPYKVSSETGYVDYDKLEEKAMDFRPKLIICGGSAYPRDWDYARFRAIADKCGAMLL 204
Query: 346 CDMAHISGLVAAKECRSPFDYCDVVTSTTHKNLXXXXXXXXXXXXXKNLRRRTGSFSQAD 405
CDMAHISGLVAA+E +PF Y DVVT+TTHK+L ++ Q +
Sbjct: 205 CDMAHISGLVAAQEAANPFQYSDVVTTTTHKSLRGPRSGMIFYRKGLKPPKK----GQPE 260
Query: 406 ENDYDFEDRINFAVFPSMQGGPHNNHIAALAITLKQVATPEYKAYIIQVKKNAQALASAL 465
YD+EDRINFAVFPS+QGGPHN+ IAALA+ LKQ +P +K+YI QVK NA AL + L
Sbjct: 261 GALYDYEDRINFAVFPSLQGGPHNHQIAALAVGLKQTMSPGFKSYIKQVKANAVALGNHL 320
Query: 466 LRRKCRLVTGGTDNHLVLWDLRNLGLTGKNFEKVCEACHISINKMPIYGDNGSISPGGVR 525
+ + +LVT GT+NHLVLWDLR LGLTG EKVC+ C I++NK ++GD+ ++SPGGVR
Sbjct: 321 MSKGYKLVTDGTENHLVLWDLRPLGLTGNKVEKVCDLCSITLNKNAVFGDSSAMSPGGVR 380
Query: 526 IGTPAMTTRGCLEDDFEVIADFLIRATQIASNLMKEHGKMQKEFLRGLQNNKDIIELRNQ 585
IGTPAMT+RG +E+DF IA+FL +A I ++ KE GK+ K F GL+NNKDI +LR +
Sbjct: 381 IGTPAMTSRGLVEEDFVQIAEFLHQAVTICLDVQKERGKLLKYFNEGLENNKDIEDLRAE 440
Query: 586 VENFASQFAMPGFDV 600
VE FA+ F MPGF V
Sbjct: 441 VEKFATSFEMPGFRV 455
>AK109000
Length = 493
Score = 556 bits (1434), Expect = e-158, Method: Compositional matrix adjust.
Identities = 263/459 (57%), Positives = 337/459 (73%), Gaps = 2/459 (0%)
Query: 142 QALAEADPDVHALMELERDRQVRGIELIASENFVCRAVLEALGSHLTNKYSEGHPGARYY 201
++L EADP+++ +++ E+ RQ +GIELIASENF R VLEALGS +TNKYSEG PGARYY
Sbjct: 33 KSLKEADPEIYGIIQDEKARQWKGIELIASENFTSRPVLEALGSCMTNKYSEGQPGARYY 92
Query: 202 GGNQHIDGIERLCHERALAAFGLDPACWGVNVQPYSCTSANLAVYTGLLLPKDRIMGLEP 261
GGN+HID E LC +RAL AF LDPA WGVNVQPYS + AN A YT LL P DRIMGLE
Sbjct: 93 GGNEHIDRAELLCKKRALEAFSLDPAAWGVNVQPYSGSPANFAAYTALLQPHDRIMGLER 152
Query: 262 PSGGHVSHGYYTPSGKKVSGASIFFESLSYKVNPQTGYIDYDKLEERAMDFHPKILICGG 321
PSGGH++HGYYT + KK+S SIFFESL YK+NPQTG++DYDKLEE+A+++ PK++ICGG
Sbjct: 153 PSGGHLTHGYYTGT-KKISATSIFFESLPYKLNPQTGFVDYDKLEEKALEYRPKLIICGG 211
Query: 322 SSYPREWDFARMRLIADKCGAVLMCDMAHISGLVAAKECRSPFDYCDVVTSTTHKNLXXX 381
S+Y REWD+ R R IADK GA L+ DMAHISGLVAA SPF+Y D+VT+TTHK+L
Sbjct: 212 SAYAREWDYKRFRQIADKVGAYLLVDMAHISGLVAAGVVDSPFEYADIVTTTTHKSLRGP 271
Query: 382 XXXXXXXXXXKNLRRRTGSFSQADENDYDFEDRINFAVFPSMQGGPHNNHIAALAITLKQ 441
R + + +YD+E +I+FAVFPS+QGGPHN+ IAALA+ LK
Sbjct: 272 RAGMIFMRKGPKPADRLAK-GEPEGTEYDYESKIDFAVFPSLQGGPHNHQIAALAVALKH 330
Query: 442 VATPEYKAYIIQVKKNAQALASALLRRKCRLVTGGTDNHLVLWDLRNLGLTGKNFEKVCE 501
A+ E+KAY QV N++AL AL + +LVT GTDNHL+LWDLR G+TG EK C+
Sbjct: 331 AASEEFKAYQRQVVANSRALGEALKKHGHKLVTDGTDNHLLLWDLRGEGITGAKMEKACD 390
Query: 502 ACHISINKMPIYGDNGSISPGGVRIGTPAMTTRGCLEDDFEVIADFLIRATQIASNLMKE 561
HI++NK + GD +++PGGVRIGTPAMT+RG E DFE +A+FL Q+A +
Sbjct: 391 EAHITLNKNAVVGDVSAMNPGGVRIGTPAMTSRGLTEADFEKVAEFLHEVLQVAKEVQAS 450
Query: 562 HGKMQKEFLRGLQNNKDIIELRNQVENFASQFAMPGFDV 600
HGK+ K+++ G+ N + E+R++VE FAS F+MPG+ V
Sbjct: 451 HGKLLKDWIVGITGNAKLAEIRSRVEAFASSFSMPGYAV 489
>Os03g0738400 Similar to Serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1)
(Serine methylase) (Glycine hydroxymethyltransferase)
(SHMT)
Length = 513
Score = 462 bits (1188), Expect = e-130, Method: Compositional matrix adjust.
Identities = 233/464 (50%), Positives = 312/464 (67%), Gaps = 11/464 (2%)
Query: 141 NQALAEADPDVHALMELERDRQVRGIELIASENFVCRAVLEALGSHLTNKYSEGHPGARY 200
N L E DP++ ++E E+ RQ +G+ELI SENF +V++A+GS +TNKYSEG+PGARY
Sbjct: 48 NAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARY 107
Query: 201 YGGNQHIDGIERLCHERALAAFGLDPACWGVNVQPYSCTSANLAVYTGLLLPKDRIMGLE 260
YGGN++ID E LC +RAL AF LDPA WGVNVQP S + AN VYT LL P +RIM L+
Sbjct: 108 YGGNEYIDMAESLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKPHERIMALD 167
Query: 261 PPSGGHVSHGYYTPSGKKVSGASIFFESLSYKVNPQTGYIDYDKLEERAMDFHPKILICG 320
P GGH+SHGY T + KK+S SIFFE++ Y+++ TG IDYD++E+ A+ F PK+++ G
Sbjct: 168 LPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLDESTGLIDYDQMEKSAVLFRPKLIVAG 226
Query: 321 GSSYPREWDFARMRLIADKCGAVLMCDMAHISGLVAAKECRSPFDYCDVVTSTTHKNLXX 380
S+Y R +D+ RMR + DK A+L+ DMAHISGLVAA SPFDY DVVT+TTHK+L
Sbjct: 227 ASAYARLYDYDRMRKVCDKQKAILLADMAHISGLVAAGVVPSPFDYADVVTTTTHKSL-- 284
Query: 381 XXXXXXXXXXXKNLRRRTGSFSQADENDYDFEDRINFAVFPSMQGGPHNNHIAALAITLK 440
K ++ G Q E YDFED+IN AVFP +QGGPHN+ I LA+ LK
Sbjct: 285 RGPRGAMIFYRKGVK---GVNKQGKEVMYDFEDKINAAVFPGLQGGPHNHTITGLAVALK 341
Query: 441 QVATPEYKAYIIQVKKNAQALASALLRRKCRLVTGGTDNHLVLWDLRNLGLTGKNFEKVC 500
Q TPEY+AY QV N A +L + LV+GGTDNHLVL +L++ G+ G EKV
Sbjct: 342 QATTPEYRAYQEQVMSNCAKFAQSLTAKGYELVSGGTDNHLVLVNLKSKGIDGSRVEKVL 401
Query: 501 EACHISINKMPIYGDNGSISPGGVRIGTPAMTTRGCLEDDFEVIADFLIRATQIASNLMK 560
E HI+ NK + GD ++ PGG+R+GTPA+T+RG +E+DF +ADF A +A +
Sbjct: 402 ENVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVADFFDAAVNLALKVKA 461
Query: 561 EHGKMQ-KEFLRGLQNN----KDIIELRNQVENFASQFAMPGFD 599
G + K+F+ LQ++ +I +LR+ VE +A QF GF+
Sbjct: 462 AAGGTKLKDFVATLQSDSNIQSEIAKLRHDVEEYAKQFPTIGFE 505
>AK111207
Length = 471
Score = 415 bits (1066), Expect = e-116, Method: Compositional matrix adjust.
Identities = 221/461 (47%), Positives = 294/461 (63%), Gaps = 12/461 (2%)
Query: 142 QALAEADPDVHALMELERDRQVRGIELIASENFVCRAVLEALGSHLTNKYSEGHPGARYY 201
++L + D +V +ME E RQ I LIASEN RAV +ALGS ++NKYSEG+PGARYY
Sbjct: 16 KSLVDTDNEVAQIMEREIQRQRESILLIASENVTSRAVFDALGSPMSNKYSEGYPGARYY 75
Query: 202 GGNQHIDGIERLCHERALAAFGLDPACWGVNVQPYSCTSANLAVYTGLLLPKDRIMGLEP 261
GGN+HID IE LC +RAL AFGLD WGVNVQ S + ANL VY ++ P DR+MGL+
Sbjct: 76 GGNEHIDAIELLCQKRALEAFGLDAEKWGVNVQCLSGSPANLQVYQAIMRPHDRLMGLDL 135
Query: 262 PSGGHVSHGYYTPSGKKVSGASIFFESLSYKVNPQTGYIDYDKLEERAMDFHPKILICGG 321
P GGH+SHGY TP +K+S S +FE+ Y+VN +TG IDYD+LE+ A+ + PK+L+ G
Sbjct: 136 PHGGHLSHGYQTPQ-RKISAVSTYFETFPYRVNLETGLIDYDQLEQNALMYRPKVLVAGT 194
Query: 322 SSYPREWDFARMRLIADKCGAVLMCDMAHISGLVAAKECRSPFDYCDVVTSTTHKNLXXX 381
S+Y R D+ARMR IADK G LM DMAHISGL+AA +SPF Y D+VT+TTHK+L
Sbjct: 195 SAYCRGIDYARMREIADKVGCYLMMDMAHISGLIAAGVNKSPFPYADIVTTTTHKSL--R 252
Query: 382 XXXXXXXXXXKNLRRRTGSFSQADENDYDFEDRINFAVFPSMQGGPHNNHIAALAITLKQ 441
K +R+ + E YD E INF+VFP QGGPHN+ I ALA+ LKQ
Sbjct: 253 GPRGAMIFFRKGVRKTDAKTGK--ETLYDLEGPINFSVFPGHQGGPHNHTITALAVALKQ 310
Query: 442 VATPEYKAYIIQVKKNAQALASALLRRKCRLVTGGTDNHLVLWDLRNLGLTGKNFEKVCE 501
+ ++ Y QV KNA+ L + +LVT GTDNH+VL DL+ L G E V E
Sbjct: 311 AQSDDFTLYQQQVIKNAKQLENTFKELGFKLVTDGTDNHMVLIDLKPFSLDGARVEAVLE 370
Query: 502 ACHISINKMPIYGDNGSISPGGVRIGTPAMTTRGCLEDDFEVIADFLIRATQIA----SN 557
+I+ NK GD +++P G+RIG PAMT+RG E DF IA+++ QI +
Sbjct: 371 QVNIACNKNTTPGDKSALTPMGIRIGAPAMTSRGLGEADFAKIANYINTCIQICKKVQAE 430
Query: 558 LMKEHGKMQKEFLRGLQNN--KDIIELRNQVENFASQFAMP 596
L KE+ K+ K+F + ++I +L+ ++ +A F +P
Sbjct: 431 LPKENNKL-KDFKAKVAGGEVEEINQLKKEIAAWAVTFPLP 470
>Os11g0455800 Similar to Hydroxymethyltransferase
Length = 256
Score = 285 bits (729), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 137/253 (54%), Positives = 180/253 (71%), Gaps = 4/253 (1%)
Query: 348 MAHISGLVAAKECRSPFDYCDVVTSTTHKNLXXXXXXXXXXXXXKNLRRRTGSFSQADEN 407
MAHISGLVAA+E +PF+YCDVVT+TTHK+L ++ Q +
Sbjct: 1 MAHISGLVAAQEAANPFEYCDVVTTTTHKSLRGPRAGMIFYRKGPKPPKK----GQPEGA 56
Query: 408 DYDFEDRINFAVFPSMQGGPHNNHIAALAITLKQVATPEYKAYIIQVKKNAQALASALLR 467
YD+ED+INFAVFPS+QGGPHN+ IAALA+ L+Q TP +KAY QVK NA A+ L+
Sbjct: 57 VYDYEDKINFAVFPSLQGGPHNHQIAALAVALQQTMTPGFKAYAKQVKANAVAIGKYLMS 116
Query: 468 RKCRLVTGGTDNHLVLWDLRNLGLTGKNFEKVCEACHISINKMPIYGDNGSISPGGVRIG 527
+ ++VT GT+NHLVLWDLR LGLTG EK+C+ C I++NK ++GD+ +++PGGVRIG
Sbjct: 117 KGYKMVTDGTENHLVLWDLRPLGLTGNKVEKMCDLCSITLNKNAVFGDSSALAPGGVRIG 176
Query: 528 TPAMTTRGCLEDDFEVIADFLIRATQIASNLMKEHGKMQKEFLRGLQNNKDIIELRNQVE 587
TPAMT+RG +E DFE I +FL +A I N+ KEHGK+ K+F +GL NNKDI L+ +VE
Sbjct: 177 TPAMTSRGLVEKDFEQIGEFLHQAVTICLNIQKEHGKLLKDFSKGLVNNKDIENLKLEVE 236
Query: 588 NFASQFAMPGFDV 600
FA+ F MPGF +
Sbjct: 237 KFATSFDMPGFTL 249
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,449,935
Number of extensions: 779619
Number of successful extensions: 1642
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1629
Number of HSP's successfully gapped: 7
Length of query: 600
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 493
Effective length of database: 11,448,903
Effective search space: 5644309179
Effective search space used: 5644309179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)