BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0264200 Os11g0264200|AK100912
(381 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0264200 Cyclin-like F-box domain containing protein 724 0.0
Os02g0200900 Leucine-rich repeat, cysteine-containing conta... 81 1e-15
Os01g0881900 Leucine-rich repeat, cysteine-containing conta... 69 6e-12
Os05g0425700 Similar to F-box protein AtFBL5 68 9e-12
Os12g0108500 Cyclin-like F-box domain containing protein 66 4e-11
>Os11g0264200 Cyclin-like F-box domain containing protein
Length = 381
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/381 (94%), Positives = 361/381 (94%)
Query: 1 MDDNVENYINFLSDDCLICIFNKLESESDRNAFGLTCKNWFKVRNIARKSIIFHCSFNPK 60
MDDNVENYINFLSDDCLICIFNKLESESDRNAFGLTCKNWFKVRNIARKSIIFHCSFNPK
Sbjct: 1 MDDNVENYINFLSDDCLICIFNKLESESDRNAFGLTCKNWFKVRNIARKSIIFHCSFNPK 60
Query: 61 VYKEHANCLSKLLARSPYLNLVSLAGLTELPDTALNQLRISGASLQSLSFYCCSGITDDG 120
VYKEHANCLSKLLARSPYLNLVSLAGLTELPDTALNQLRISGASLQSLSFYCCSGITDDG
Sbjct: 61 VYKEHANCLSKLLARSPYLNLVSLAGLTELPDTALNQLRISGASLQSLSFYCCSGITDDG 120
Query: 121 LEVVSIGCPNLVSLELYRCFNITDHGLENLCKGCHALKSLNLGYCVAISDQGIAAIFRNC 180
LEVVSIGCPNLVSLELYRCFNITDHGLENLCKGCHALKSLNLGYCVAISDQGIAAIFRNC
Sbjct: 121 LEVVSIGCPNLVSLELYRCFNITDHGLENLCKGCHALKSLNLGYCVAISDQGIAAIFRNC 180
Query: 181 PNISTIIIAYCRGLSGVGFRGCPGTLSHLEAESCMLSPXXXXXXXXXXXXXXXXXXXXKS 240
PNISTIIIAYCRGLSGVGFRGCPGTLSHLEAESCMLSP KS
Sbjct: 181 PNISTIIIAYCRGLSGVGFRGCPGTLSHLEAESCMLSPDGLLDVVSGGGLEYLNLYNLKS 240
Query: 241 PTGLDGLDRVGYARSLRFLNLRMCRYLTDDSVTAIASGCPLIEEWSLAVCHGVRLPGWSA 300
PTGLDGLDRVGYARSLRFLNLRMCRYLTDDSVTAIASGCPLIEEWSLAVCHGVRLPGWSA
Sbjct: 241 PTGLDGLDRVGYARSLRFLNLRMCRYLTDDSVTAIASGCPLIEEWSLAVCHGVRLPGWSA 300
Query: 301 IGLLCNKLRILHVNRCRNICDQGLQALGDGCVCLQVLHIHGCGKITNNGLASFSIARPNV 360
IGLLCNKLRILHVNRCRNICDQGLQALGDGCVCLQVLHIHGCGKITNNGLASFSIARPNV
Sbjct: 301 IGLLCNKLRILHVNRCRNICDQGLQALGDGCVCLQVLHIHGCGKITNNGLASFSIARPNV 360
Query: 361 KQRADEVMCIGPSIEDLFRLQ 381
KQRADEVMCIGPSIEDLFRLQ
Sbjct: 361 KQRADEVMCIGPSIEDLFRLQ 381
>Os02g0200900 Leucine-rich repeat, cysteine-containing containing protein
Length = 511
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 128/301 (42%), Gaps = 19/301 (6%)
Query: 76 SPYLNLVSLAGLTELPDTALNQLRISGASLQSLSFYCCSGITDDGLEVVSIGCPNLVSLE 135
SP L ++L + + D L ++ SL+ L C ITD GL V+ GCPNL+SL
Sbjct: 56 SPNLCSLALWDVPLVTDAGLAEIAAGCPSLERLDITRCPLITDKGLAAVAHGCPNLLSLT 115
Query: 136 LYRCFNITDHGLENLCKGCHALKSLNLGYCVAISDQGIAAIFRNCPNISTIIIAYCRG-- 193
+ C + + GL + + C +++LN+ C I DQGI+++ C +++ +G
Sbjct: 116 VESCSGVGNDGLRAIGRSCSKIQALNIKNCARIGDQGISSLV--CSATASLTKIRLQGLN 173
Query: 194 -----LSGVGFRGCPGTLSHLEAESCMLSPXXXXXXXXXXXXXXXXXXXXKSPTGLDGLD 248
L+ +G+ G T L + P G+ L
Sbjct: 174 ITDASLALIGYYGKAVTDLTLVRLPVVAERGFWVMANAAGLQNLRCMSVTSCP-GVTNLA 232
Query: 249 RVGYAR---SLRFLNLRMCRYLTDDSVTAIASGCPLIEEWSLAVCHGVRLPGWSAIGLLC 305
A+ SLR L+ R C ++TD + A L+E L C+GV L G + C
Sbjct: 233 LAAIAKFCPSLRQLSFRKCGHMTDAGLKAFTESARLLESLQLEECNGVTLVGILDFLVNC 292
Query: 306 N-KLRILHVNRC---RNICDQGLQALGDGCVCLQVLHIHGCGKITNNGLASFSIARPNVK 361
K R L + +C ++IC Q C LQ L I C T+ LA + P ++
Sbjct: 293 GPKFRSLSLVKCMGIKDICSTPAQL--PLCKSLQFLTIKDCPDFTDASLAVVGMVCPYLE 350
Query: 362 Q 362
Q
Sbjct: 351 Q 351
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 7/234 (2%)
Query: 127 GCPNLVSLELYRCFNITDHGLENLCKGCHALKSLNLGYCVAISDQGIAAIFRNCPNISTI 186
G PNL SL L+ +TD GL + GC +L+ L++ C I+D+G+AA+ CPN+ ++
Sbjct: 55 GSPNLCSLALWDVPLVTDAGLAEIAAGCPSLERLDITRCPLITDKGLAAVAHGCPNLLSL 114
Query: 187 IIAYCRGLSGVGFRGCPGTLSHLEAESCMLSPXXXXXXXXXXXXXXXXXXXXKSPTGLDG 246
+ C G+ G R + S ++A + GL+
Sbjct: 115 TVESCSGVGNDGLRAIGRSCSKIQALNIKNCARIGDQGISSLVCSATASLTKIRLQGLNI 174
Query: 247 LDR----VG-YARSLRFLNLRMCRYLTDDS--VTAIASGCPLIEEWSLAVCHGVRLPGWS 299
D +G Y +++ L L + + V A A+G + S+ C GV +
Sbjct: 175 TDASLALIGYYGKAVTDLTLVRLPVVAERGFWVMANAAGLQNLRCMSVTSCPGVTNLALA 234
Query: 300 AIGLLCNKLRILHVNRCRNICDQGLQALGDGCVCLQVLHIHGCGKITNNGLASF 353
AI C LR L +C ++ D GL+A + L+ L + C +T G+ F
Sbjct: 235 AIAKFCPSLRQLSFRKCGHMTDAGLKAFTESARLLESLQLEECNGVTLVGILDF 288
>Os01g0881900 Leucine-rich repeat, cysteine-containing containing protein
Length = 379
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 77 PYLNLVSLAGLTELPDTALNQLRISGASLQSLSF-YCCSGITDDGLEVVSIGCPNLVSLE 135
P+L ++++G + D AL L +L+ L+ C ++D L+ ++ C L SL
Sbjct: 157 PHLTRLNISGCSNFSDAALAYLSSQCKNLKCLNLCGCVRAVSDRALQAIACNCGQLQSLN 216
Query: 136 LYRCFNITDHGLENLCKGCHALKSLNLGYCVAISDQGIAAIFRNCPNISTIIIAYCRGLS 195
L C ++TD G+ +L GC L++L+L CV I+D+ + A+ CP++ ++ + YC+ ++
Sbjct: 217 LGWCDSVTDKGVTSLASGCPELRALDLCGCVLITDESVVALANGCPHLRSLGLYYCQNIT 276
>Os05g0425700 Similar to F-box protein AtFBL5
Length = 376
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Query: 73 LARS-PYLNLVSLAGLTELPDTALNQLRISGASLQSLSF-YCCSGITDDGLEVVSIGCPN 130
LAR P L ++++G + DTAL L + + L+ C TD L+ ++ C
Sbjct: 152 LARGCPQLTKLNISGCSNFSDTALTYLTFHCKNFKCLNLCGCGKAATDRALQAIARNCGQ 211
Query: 131 LVSLELYRCFNITDHGLENLCKGCHALKSLNLGYCVAISDQGIAAIFRNCPNISTIIIAY 190
L SL L C ++TD G+ +L GC L++L+L CV I+D+ + A+ CP++ ++ + Y
Sbjct: 212 LQSLNLGWCEDVTDKGVTSLASGCPDLRALDLCGCVLITDESVIALATGCPHLRSLGLYY 271
Query: 191 CRGLS 195
C+ ++
Sbjct: 272 CQNIT 276
>Os12g0108500 Cyclin-like F-box domain containing protein
Length = 677
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 15/118 (12%)
Query: 100 ISGAS-LQSLSFYCCSGITDDGLEVVSIGCPNLVSLELYRCFNITDHGLENLCKGCHALK 158
+SG S L SL C ITD+GL VS CP+L ++LYR I+D G+ ++ +GC L+
Sbjct: 438 LSGCSKLSSLKIGICLRITDEGLRHVSKSCPDLRDIDLYRSGAISDEGVTHIAQGCPMLE 497
Query: 159 SLNLGYCVAISDQGIAAI----------FRNCPNISTI----IIAYCRGLSGVGFRGC 202
S+N+ YC ++D + ++ R CP +S+ I CR LS + + C
Sbjct: 498 SINMSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSEIATGCRLLSKLDIKKC 555
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.141 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,322,343
Number of extensions: 479659
Number of successful extensions: 2228
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 2191
Number of HSP's successfully gapped: 13
Length of query: 381
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 278
Effective length of database: 11,657,759
Effective search space: 3240857002
Effective search space used: 3240857002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)