Os01g0881900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, cysteine-containing containing protein.
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Os01g0881900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, cysteine-containing containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.17 | 0.528 | 11.4 | -2.61 | 1.27 | 1.39 | -0.131 | -0.805 | -1.25 | 14.6 | 23 | 1841 | -- | -- |
| 127 | 0.525 | 11.4 | -2.32 | 1.29 | 1.41 | -0.248 | -- | -1.18 | 14.4 | 22.8 | 1945 | -- | -- |
| 125.91 | 0.523 | 11.4 | -2.54 | 1.28 | 1.39 | -- | -0.675 | -1.21 | 14.6 | 22.9 | 1854 | -- | -- |
| 126.68 | 0.524 | 11.4 | -2.28 | 1.28 | 1.38 | -- | -- | -1.13 | 14.7 | 22.9 | 1632 | -- | -- |
| 203.79 | 0.665 | 11.4 | -2.2 | -- | 1.42 | -- | 0.112 | -0.969 | -- | 21.33 | 99 | -- | -- |
| 207.08 | 0.675 | 11.3 | -1.76 | 1.26 | -- | -0.132 | -- | -0.603 | 14.7 | -- | -- | -- | -- |
| 207.14 | 0.674 | 11.3 | -1.77 | 1.26 | -- | -- | -- | -0.604 | 14.7 | -- | -- | -- | -- |
| 187.62 | 0.638 | 11.4 | -2.09 | -- | 1.15 | -- | -- | -0.861 | -- | 26.8 | 84 | -- | -- |
| 254.11 | 0.742 | 11.4 | -- | 1.29 | 0.984 | -- | -- | -0.752 | 14.5 | 22.9 | 1576 | -- | -- |
| 298.99 | 0.808 | 11.3 | -1.82 | -- | -- | -- | -- | -0.636 | -- | -- | -- | -- | -- |
| 289.32 | 0.796 | 11.2 | -- | 1.29 | -- | -- | -- | -0.407 | 14.7 | -- | -- | -- | -- |
| 298.88 | 0.805 | 11.3 | -- | -- | 0.973 | -- | -- | -0.599 | -- | 26.8 | 26 | -- | -- |
| 386.3 | 0.917 | 11.3 | -- | -- | -- | -- | -- | -0.434 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 2 | 117.07 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 12 | 120.26 | temperature | 15 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 14 | 120.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 16 | 120.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 23 | 121.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 71 | 124.16 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 98 | 125.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 137 | 126.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 14 |
| 147 | 126.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 153 | 126.92 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 190 | 127.35 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 231 | 127.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 243 | 127.82 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 245 | 127.84 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 264 | 128.00 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 363 | 128.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 395 | 129.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 417 | 129.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 474 | 129.50 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 514 | 129.60 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 645 | 130.00 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 929 | 130.91 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 989 | 131.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 990 | 131.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |