BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0881900 Os01g0881900|AK102849
(379 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0881900 Leucine-rich repeat, cysteine-containing conta... 675 0.0
Os05g0425700 Similar to F-box protein AtFBL5 501 e-142
Os12g0552700 Leucine-rich repeat, cysteine-containing subty... 80 2e-15
Os12g0108500 Cyclin-like F-box domain containing protein 70 2e-12
Os02g0281150 Leucine-rich repeat, cysteine-containing subty... 69 5e-12
Os11g0264200 Cyclin-like F-box domain containing protein 65 7e-11
>Os01g0881900 Leucine-rich repeat, cysteine-containing containing protein
Length = 379
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/379 (89%), Positives = 338/379 (89%)
Query: 1 MDGEQLMSGELDNSFNALMVSGEGESGQAHHEGTGTTLLGWKDLPMELLLRILSMAGDDR 60
MDGEQLMSGELDNSFNALMVSGEGESGQAHHEGTGTTLLGWKDLPMELLLRILSMAGDDR
Sbjct: 1 MDGEQLMSGELDNSFNALMVSGEGESGQAHHEGTGTTLLGWKDLPMELLLRILSMAGDDR 60
Query: 61 MVIVGSGVCTGWRDTLEWGVTNLSLSWCQAHMNDLVMSLAQKFTKLQVLSLRQIKPQLED 120
MVIVGSGVCTGWRDTLEWGVTNLSLSWCQAHMNDLVMSLAQKFTKLQVLSLRQIKPQLED
Sbjct: 61 MVIVGSGVCTGWRDTLEWGVTNLSLSWCQAHMNDLVMSLAQKFTKLQVLSLRQIKPQLED 120
Query: 121 SAVEAVANNCHXXXXXXXXXXXXXXXXXXYALAHGCPHLTRLNISGCSNFSDAALAYLSS 180
SAVEAVANNCH YALAHGCPHLTRLNISGCSNFSDAALAYLSS
Sbjct: 121 SAVEAVANNCHDLRELDLSRSFRLSDRSLYALAHGCPHLTRLNISGCSNFSDAALAYLSS 180
Query: 181 QXXXXXXXXXXGCVRAVSDRALQAIACNCGQLQSLNLGWCDSVTDKGVTSLASGCPELRA 240
Q GCVRAVSDRALQAIACNCGQLQSLNLGWCDSVTDKGVTSLASGCPELRA
Sbjct: 181 QCKNLKCLNLCGCVRAVSDRALQAIACNCGQLQSLNLGWCDSVTDKGVTSLASGCPELRA 240
Query: 241 LDLCGCVLITDESVVALANGCPHLRSLGLYYCQNITDRAMYSLAANSRRVRSKGRSWDXX 300
LDLCGCVLITDESVVALANGCPHLRSLGLYYCQNITDRAMYSLAANSRRVRSKGRSWD
Sbjct: 241 LDLCGCVLITDESVVALANGCPHLRSLGLYYCQNITDRAMYSLAANSRRVRSKGRSWDAA 300
Query: 301 XXXXXXXXXXXLASLNISQCTALTPPAVQAVCDSFPALHTCPERHSLIISGCLSLTSVHC 360
LASLNISQCTALTPPAVQAVCDSFPALHTCPERHSLIISGCLSLTSVHC
Sbjct: 301 ARKNAGAGADGLASLNISQCTALTPPAVQAVCDSFPALHTCPERHSLIISGCLSLTSVHC 360
Query: 361 ACAHHPHRHGRAILSNHAY 379
ACAHHPHRHGRAILSNHAY
Sbjct: 361 ACAHHPHRHGRAILSNHAY 379
>Os05g0425700 Similar to F-box protein AtFBL5
Length = 376
Score = 501 bits (1290), Expect = e-142, Method: Compositional matrix adjust.
Identities = 257/372 (69%), Positives = 285/372 (76%), Gaps = 3/372 (0%)
Query: 8 SGELDNSFNALMVSGEGESGQAHHEGTGTTLLGWKDLPMELLLRILSMAGDDRMVIVGSG 67
+GELD F +LM+S GQA G TL GWKDLP+ELLLRI+S+ GDDRM++V SG
Sbjct: 8 NGELDACFRSLMLSISSGRGQAEGGGAMPTLSGWKDLPIELLLRIMSIIGDDRMLVVASG 67
Query: 68 VCTGWRDTLEWGVTNLSLSWCQAHMNDLVMSLAQKFTKLQVLSLRQIKPQLEDSAVEAVA 127
VCTGWRD L WG+TNLSLS CQ +MN+L++SLA KFTKLQVL+LRQ PQLEDSAVEAV+
Sbjct: 68 VCTGWRDALGWGLTNLSLSRCQQNMNNLMISLAHKFTKLQVLTLRQNIPQLEDSAVEAVS 127
Query: 128 NNCHXXXXXXXXXXXXXXXXXXYALAHGCPHLTRLNISGCSNFSDAALAYLSSQXXXXXX 187
N CH YALA GCP LT+LNISGCSNFSD AL YL+
Sbjct: 128 NYCHDLRELDLSRSFRLSDRSLYALARGCPQLTKLNISGCSNFSDTALTYLTFHCKNFKC 187
Query: 188 XXXXGCVRAVSDRALQAIACNCGQLQSLNLGWCDSVTDKGVTSLASGCPELRALDLCGCV 247
GC +A +DRALQAIA NCGQLQSLNLGWC+ VTDKGVTSLASGCP+LRALDLCGCV
Sbjct: 188 LNLCGCGKAATDRALQAIARNCGQLQSLNLGWCEDVTDKGVTSLASGCPDLRALDLCGCV 247
Query: 248 LITDESVVALANGCPHLRSLGLYYCQNITDRAMYSLAANSRRVRSKGRSWDXXXXXXXXX 307
LITDESV+ALA GCPHLRSLGLYYCQNITDRAMYSLA + RV+SK R WD
Sbjct: 248 LITDESVIALATGCPHLRSLGLYYCQNITDRAMYSLA--NSRVKSKRRRWD-SVRSSSSK 304
Query: 308 XXXXLASLNISQCTALTPPAVQAVCDSFPALHTCPERHSLIISGCLSLTSVHCACAHHPH 367
LA+LNISQCTALTPPAVQAVCDSFPALHTCP RHSLIISGCLSLTSVHCACA HPH
Sbjct: 305 EEDGLANLNISQCTALTPPAVQAVCDSFPALHTCPGRHSLIISGCLSLTSVHCACALHPH 364
Query: 368 RHGRAILSNHAY 379
R GR ++ +HAY
Sbjct: 365 RAGRTMVPSHAY 376
>Os12g0552700 Leucine-rich repeat, cysteine-containing subtype containing protein
Length = 362
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 3/130 (2%)
Query: 151 ALAHGCPHLTRLNISGCSNFSDAALAYLSSQXXXXXXXXXXGCVRAVSDRALQAIACNCG 210
++A C + L + CS+ S+ L +++ C V+D ALQ +A C
Sbjct: 84 SIAENCKMVEHLRLESCSSISEKGLEQIATSCPNLKEIDLTDC--GVNDAALQHLA-KCS 140
Query: 211 QLQSLNLGWCDSVTDKGVTSLASGCPELRALDLCGCVLITDESVVALANGCPHLRSLGLY 270
+L L LG C S++DKG+ ++S C +L LDL C ITD+ + ALANGC ++ L L
Sbjct: 141 ELLVLKLGLCSSISDKGLAFISSSCGKLIELDLYRCNSITDDGLAALANGCKKIKMLNLC 200
Query: 271 YCQNITDRAM 280
YC ITD +
Sbjct: 201 YCNKITDSGL 210
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 25/161 (15%)
Query: 155 GCPHLTRLNISGCSNFSDAALAYLSSQXXXXXXXXXXGCVRAVSDRALQAIACNCGQLQS 214
GC +L + +S C+ +D ++ L +Q C +++ AL +IA NC ++
Sbjct: 36 GCNNLVEIGLSKCNGVTDEGISSLVTQCSHLRVIDLT-CCNLLTNNALDSIAENCKMVEH 94
Query: 215 LNLGWCDSVTDKGVTSLASGCPELRALDL--CG----------------------CVLIT 250
L L C S+++KG+ +A+ CP L+ +DL CG C I+
Sbjct: 95 LRLESCSSISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSIS 154
Query: 251 DESVVALANGCPHLRSLGLYYCQNITDRAMYSLAANSRRVR 291
D+ + +++ C L L LY C +ITD + +LA ++++
Sbjct: 155 DKGLAFISSSCGKLIELDLYRCNSITDDGLAALANGCKKIK 195
>Os12g0108500 Cyclin-like F-box domain containing protein
Length = 677
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 28/227 (12%)
Query: 82 NLSLSWCQAHMNDLVMSLAQKFTKLQVLSLRQIKPQLEDSAVEAVANNCHXXXXXXXXXX 141
L+LS+C + S + KLQ L L Q D ++++ +C
Sbjct: 294 ELNLSYCSPVTPSMSSSF-EMIHKLQKLKLDGC--QFMDDGLKSIGKSCVSLRELSLSKC 350
Query: 142 XXXXXXXXYALAHGCPHLTRLNISGCSNFSDAALAYLSSQXXXXXXXXXXGCVRAVSDRA 201
+ +L +L+++ C +D +LA +++ C VS +
Sbjct: 351 SGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAITTSCPSLISLRMESC-SLVSSKG 409
Query: 202 LQAIA------------------------CNCGQLQSLNLGWCDSVTDKGVTSLASGCPE 237
LQ I C +L SL +G C +TD+G+ ++ CP+
Sbjct: 410 LQLIGRRCTHLEELDLTDTDLDDEGLKALSGCSKLSSLKIGICLRITDEGLRHVSKSCPD 469
Query: 238 LRALDLCGCVLITDESVVALANGCPHLRSLGLYYCQNITDRAMYSLA 284
LR +DL I+DE V +A GCP L S+ + YC +TD ++ SL+
Sbjct: 470 LRDIDLYRSGAISDEGVTHIAQGCPMLESINMSYCTKLTDCSLRSLS 516
>Os02g0281150 Leucine-rich repeat, cysteine-containing subtype containing protein
Length = 367
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Query: 104 TKLQVLSLRQIKP--QLEDSAVEAVANNCHXXXXXXXXXXXXXXXXXXYALAHGCPHLTR 161
T LQ L L I ++ D +E + + C + C H+
Sbjct: 141 TSLQELELLNINACQKVSDKGIETITSLCPNLRALSIYWIVGLTDLTIRHIVQNCKHIVD 200
Query: 162 LNISGCSNFSDAALAYLSSQXXXXXXXXXXGCVRAVSDRALQAIACNCGQLQSLNL---G 218
LN+SGC N SD + ++ C++ ++D LQ + C L+SLNL
Sbjct: 201 LNLSGCKNISDKGMQLVADNYEGLKKLNITRCIK-LTDDGLQEVLQKCSSLESLNLYALS 259
Query: 219 WCDSVTDKGVTSLASGCPELRALDLCGCVLITDESVVALANGC 261
C VTD GV ++A GC L+ L L G V +TD + AL+ C
Sbjct: 260 RCVRVTDVGVVAIAQGCRSLQLLSLFGIVGVTDVCLEALSKHC 302
>Os11g0264200 Cyclin-like F-box domain containing protein
Length = 381
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 157 PHLTRLNISGCSNFSDAALAYLSSQXXXXXXXXXXGCVRAVSDRALQAIACNCGQLQSLN 216
P+L ++++G + D AL L C ++D L+ ++ C L SL
Sbjct: 77 PYLNLVSLAGLTELPDTALNQLRISGASLQSLSFY-CCSGITDDGLEVVSIGCPNLVSLE 135
Query: 217 LGWCDSVTDKGVTSLASGCPELRALDLCGCVLITDESVVALANGCPHLRSLGLYYCQNIT 276
L C ++TD G+ +L GC L++L+L CV I+D+ + A+ CP++ ++ + YC+ ++
Sbjct: 136 LYRCFNITDHGLENLCKGCHALKSLNLGYCVAISDQGIAAIFRNCPNISTIIIAYCRGLS 195
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.133 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,183,019
Number of extensions: 396015
Number of successful extensions: 1524
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1467
Number of HSP's successfully gapped: 13
Length of query: 379
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 276
Effective length of database: 11,657,759
Effective search space: 3217541484
Effective search space used: 3217541484
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)