Os12g0108500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os12g0108500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.99 | 0.477 | 11.7 | -0.447 | 1.35 | -0.911 | -0.423 | -1.83 | 0.0373 | 1.48 | 24.9 | 1419 | -- | -- |
| 105.98 | 0.479 | 11.7 | -0.756 | 1.35 | -0.656 | -0.312 | -- | 0.00719 | 1.65 | 36.31 | 2016 | -- | -- |
| 103.68 | 0.474 | 11.7 | -0.451 | 1.35 | -0.902 | -- | -1.76 | 0.0358 | 1.49 | 24.9 | 1443 | -- | -- |
| 106.44 | 0.48 | 11.7 | -0.764 | 1.35 | -0.665 | -- | -- | -0.00114 | 1.7 | 47.36 | 2083 | -- | -- |
| 205.63 | 0.668 | 11.7 | -0.382 | -- | -1.13 | -- | -1.91 | 0.0646 | -- | 26.6 | 2465 | -- | -- |
| 113.76 | 0.5 | 11.7 | -0.547 | 1.38 | -- | -0.353 | -- | 0.125 | 1.52 | -- | -- | -- | -- |
| 114.27 | 0.501 | 11.7 | -0.535 | 1.38 | -- | -- | -- | 0.127 | 1.53 | -- | -- | -- | -- |
| 200.81 | 0.66 | 11.7 | -0.877 | -- | -1.36 | -- | -- | -0.0978 | -- | 31.85 | 1022 | -- | -- |
| 119.52 | 0.509 | 11.7 | -- | 1.36 | -0.341 | -- | -- | 0.133 | 1.6 | 47.68 | 1986 | -- | -- |
| 230.66 | 0.71 | 11.7 | -0.48 | -- | -- | -- | -- | 0.157 | -- | -- | -- | -- | -- |
| 121.82 | 0.516 | 11.7 | -- | 1.37 | -- | -- | -- | 0.186 | 1.52 | -- | -- | -- | -- |
| 211.17 | 0.679 | 11.6 | -- | -- | 1.15 | -- | -- | 0.365 | -- | 31.85 | 1022 | -- | -- |
| 236.75 | 0.718 | 11.7 | -- | -- | -- | -- | -- | 0.21 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.77 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 16 |
| 13 | 96.90 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 18 |
| 15 | 97.05 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 15 |
| 16 | 97.07 | humidity | 80 | 30 | < th | dose independent | rect. | 22 | 17 |
| 19 | 97.17 | humidity | 80 | 270 | > th | dose independent | rect. | 1 | 16 |
| 21 | 97.20 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 15 |
| 25 | 97.28 | humidity | 80 | 270 | > th | dose independent | rect. | 1 | 14 |
| 33 | 97.41 | humidity | 80 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 34 | 97.42 | humidity | 80 | 90 | > th | dose independent | rect. | 3 | 12 |
| 38 | 97.57 | humidity | 80 | 270 | > th | dose independent | rect. | 1 | 18 |
| 43 | 97.66 | humidity | 80 | 90 | > th | dose independent | sin | 4 | NA |
| 45 | 97.69 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 8 |
| 46 | 97.69 | humidity | 80 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 49 | 97.71 | humidity | 80 | 90 | > th | dose independent | rect. | 3 | 14 |
| 87 | 98.06 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 6 |
| 94 | 98.14 | humidity | 70 | 90 | > th | dose dependent | sin | 4 | NA |
| 128 | 98.43 | humidity | 80 | 90 | > th | dose independent | rect. | 3 | 16 |
| 147 | 98.64 | humidity | 80 | 270 | > th | dose independent | rect. | 1 | 7 |
| 176 | 98.93 | humidity | 80 | 90 | < th | dose independent | sin | 4 | NA |
| 193 | 99.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 7 |
| 215 | 99.11 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 8 |
| 224 | 99.19 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 275 | 99.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 311 | 99.60 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 6 |
| 323 | 99.64 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 1 |
| 328 | 99.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 8 |
| 365 | 99.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 4 |
| 414 | 100.04 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 438 | 100.09 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 440 | 100.10 | humidity | 70 | 270 | > th | dose dependent | rect. | 1 | 8 |
| 506 | 100.34 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 509 | 100.37 | radiation | 1 | 270 | > th | dose independent | rect. | 4 | 11 |
| 523 | 100.38 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 2 |
| 533 | 100.41 | temperature | 15 | 10 | > th | dose dependent | rect. | 18 | 15 |
| 542 | 100.45 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 9 |
| 560 | 100.49 | temperature | 25 | 720 | < th | dose dependent | sin | 16 | NA |
| 576 | 100.53 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 1 |
| 609 | 100.63 | humidity | 80 | 270 | > th | dose independent | rect. | 3 | 2 |
| 714 | 100.89 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 6 |
| 721 | 100.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 729 | 100.93 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 20 |
| 731 | 100.94 | radiation | 1 | 270 | < th | dose independent | rect. | 3 | 14 |
| 755 | 100.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 763 | 101.00 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 8 |
| 806 | 101.07 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 20 | 8 |
| 813 | 101.09 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 11 |
| 829 | 101.12 | radiation | 1 | 270 | < th | dose independent | rect. | 3 | 12 |
| 832 | 101.12 | radiation | 1 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 891 | 101.25 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 7 |
| 927 | 101.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 963 | 101.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 966 | 101.38 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 6 |
| 975 | 101.40 | radiation | 1 | 270 | < th | dose independent | sin | 2 | NA |
| 988 | 101.43 | radiation | 1 | 270 | > th | dose independent | sin | 2 | NA |