BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0246600 Os11g0246600|Os11g0246600
(433 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0246600 Peptidase S1C, HrtA/DegP2/Q/S family protein 691 0.0
Os04g0459900 Peptidase S1C, HrtA/DegP2/Q/S family protein 100 3e-21
Os05g0568900 Similar to Protease Do-like 1, chloroplast pre... 87 2e-17
Os01g0278600 Peptidase, trypsin-like serine and cysteine do... 82 6e-16
>Os11g0246600 Peptidase S1C, HrtA/DegP2/Q/S family protein
Length = 433
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/391 (89%), Positives = 350/391 (89%)
Query: 43 EAFSTTTTAVRIXXXXXXXXXXXXXXXGILPGGSAHLLPSPLPLGEGFSFLNFFTSASNW 102
EAFSTTTTAVRI GILPGGSAHLLPSPLPLGEGFSFLNFFTSASNW
Sbjct: 43 EAFSTTTTAVRISASSPLRRALSSAASGILPGGSAHLLPSPLPLGEGFSFLNFFTSASNW 102
Query: 103 SAGFPTQNSFASASVPPTXXXXXXXXXXXXXXKCCPGCINRNTIXXXXXXXXXXXXNISS 162
SAGFPTQNSFASASVPPT KCCPGCINRNTI NISS
Sbjct: 103 SAGFPTQNSFASASVPPTNLSNQSSDGNSDDSKCCPGCINRNTIAKAAAAVGPAVVNISS 162
Query: 163 TQETHGWVLEKSIGSGTIIDPDGTILTCAHVVLDFQSTKPILRGKVSVTLQDGREFEGTV 222
TQETHGWVLEKSIGSGTIIDPDGTILTCAHVVLDFQSTKPILRGKVSVTLQDGREFEGTV
Sbjct: 163 TQETHGWVLEKSIGSGTIIDPDGTILTCAHVVLDFQSTKPILRGKVSVTLQDGREFEGTV 222
Query: 223 LNADRHSDIAVVKIKSKTPLPSANLGSSSKLRPGDWVVALGCPLSLQNTVTAGIGNSGGP 282
LNADRHSDIAVVKIKSKTPLPSANLGSSSKLRPGDWVVALGCPLSLQNTVTAGIGNSGGP
Sbjct: 223 LNADRHSDIAVVKIKSKTPLPSANLGSSSKLRPGDWVVALGCPLSLQNTVTAGIGNSGGP 282
Query: 283 LVNLDGEIVGVNVMKVWAADGLSFAVPIDSIVKIVENFKKNGRVVRPWLGLKMLDLNPMI 342
LVNLDGEIVGVNVMKVWAADGLSFAVPIDSIVKIVENFKKNGRVVRPWLGLKMLDLNPMI
Sbjct: 283 LVNLDGEIVGVNVMKVWAADGLSFAVPIDSIVKIVENFKKNGRVVRPWLGLKMLDLNPMI 342
Query: 343 IAQLKERSSSFPDVKNGVLVPMVTPGSPAEHAGFRPGDVVVEFDGKLVESIKEIIDIMGD 402
IAQLKERSSSFPDVKNGVLVPMVTPGSPAEHAGFRPGDVVVEFDGKLVESIKEIIDIMGD
Sbjct: 343 IAQLKERSSSFPDVKNGVLVPMVTPGSPAEHAGFRPGDVVVEFDGKLVESIKEIIDIMGD 402
Query: 403 KVGVPFKVLVKRANNVTVSLTVIPEEADSSR 433
KVGVPFKVLVKRANNVTVSLTVIPEEADSSR
Sbjct: 403 KVGVPFKVLVKRANNVTVSLTVIPEEADSSR 433
>Os04g0459900 Peptidase S1C, HrtA/DegP2/Q/S family protein
Length = 445
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 143/303 (47%), Gaps = 60/303 (19%)
Query: 176 GSGTIIDPDGTILTCAHVVLDFQSTKPI---LRGKVSVTLQDG--REFEGTVLNADRHSD 230
GSG + D G I+T HVV + S KP + +V++ DG + FEG ++ ADR D
Sbjct: 152 GSGVVWDDSGHIVTNYHVVGNALSKKPKPGEVVARVNILAADGIQKNFEGKLVGADRSKD 211
Query: 231 IAVVKIKSKTPL-PSANLGSSSKLRPGDWVVALGCPLSLQNTVTAGI------------- 276
+AV+K+ + T L N+G SS LR G +A+G P + +T G+
Sbjct: 212 LAVLKVDAPTDLLKPINVGQSSALRVGQQCLAIGNPFGFDHALTVGVISGLNRDIFSQAG 271
Query: 277 ---------------GNSGGPLVNLDGEIVGVNV---MKVWAADGLSFAVPIDSIVKIVE 318
GNSGGPL++ G ++G+N + + G+ FA+P +++KI
Sbjct: 272 VTIGGGIQTDAAINPGNSGGPLLDSKGHMIGINTAIFTQTGTSAGVGFAIPSSTVLKIAP 331
Query: 319 NFKKNGRVVRPWLGLKMLDLNPMIIAQLKERSSSFPDVKNGVLVPMVTPGSPAEHAGFRP 378
+ G+V R L ++ +P I QL +V+ G L+ V GS A AG P
Sbjct: 332 QLIQFGKVRRAGLNVEFAP-DP-IAYQL--------NVRTGSLILQVPGGSAAAKAGLVP 381
Query: 379 -----------GDVVVEFDGKLVESIKEIIDIMGDK-VGVPFKVLVKRANNVTVSLTVIP 426
GDV+V DGK ++ ++ ++ D VG + ++R T+ +T+
Sbjct: 382 TSRGFAGNIVLGDVIVAVDGKPIKGKSDLSRVLDDYGVGDKVSLTIQRGAE-TLEVTLPL 440
Query: 427 EEA 429
EEA
Sbjct: 441 EEA 443
>Os05g0568900 Similar to Protease Do-like 1, chloroplast precursor (EC 3.4.21.-)
Length = 437
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 136/307 (44%), Gaps = 77/307 (25%)
Query: 176 GSGTIIDPDGTILTCAHVVLDFQSTKPILRG--KVSVTLQDGREFEGTVLNADRHSDIAV 233
GSG + D G I+T HV+ RG + VTL D +E V+ D+ D+AV
Sbjct: 155 GSGFVWDKSGHIVTNFHVI----------RGASDLRVTLADQTVYEAQVVGFDQDKDVAV 204
Query: 234 VKIKSKT----PLPSANLGSSSKLRPGDWVVALGCPLSLQNTVTAGI------------- 276
++IK+ T P+P +G S+ L G V A+G P L +T+T G+
Sbjct: 205 LRIKAPTDKLRPVP---VGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAAT 261
Query: 277 ----------------GNSGGPLVNLDGEIVGVNVMKV---WAADGLSFAVPIDSIVKIV 317
GNSGGPL++ G ++GVN A+ G+ F++P+D++ IV
Sbjct: 262 GRPIQDVIQTDAAINPGNSGGPLLDSSGNLIGVNTAIYSPSGASSGVGFSIPVDTVGGIV 321
Query: 318 ENFKKNGRVVRPWLGLKMLDLNPMIIAQLKERSSSFPDVKNGVLVPMVTPGSPAEHAGFR 377
+ K G+V RP LG+K + QL +GVLV P PA AG +
Sbjct: 322 DQLIKFGKVTRPILGIKF--APDQSVEQLG---------LSGVLVLDAPPNGPAGKAGLQ 370
Query: 378 P-----------GDVVVEFDGKLVESIKEIIDIMGD-KVGVPFKVLVKRANN---VTVSL 422
GD++ +G V + ++ I+ KVG V V R + + V L
Sbjct: 371 STKRDSYGRLILGDIITSVNGTKVTNGSDLYRILDQCKVGEKVTVEVLRGDQKEKIPVIL 430
Query: 423 TVIPEEA 429
P+E+
Sbjct: 431 EPKPDES 437
>Os01g0278600 Peptidase, trypsin-like serine and cysteine domain containing
protein
Length = 470
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 36/236 (15%)
Query: 226 DRHSDIAVVKIKSKTPLPSANLGSSSKLRPGDWVVALG---------------------- 263
D H +IA+V++ S L A + + GD V+ALG
Sbjct: 206 DFHHNIALVEVTSNFKLQEAVI-LKYIIDKGD-VLALGRSYEGGLLMCSRGEISNRASIF 263
Query: 264 -CPLSLQNTVTAGIGNSGGPLVNLDGEIVGVNVMKVWAADGLSFAVPIDSIVKIVENFKK 322
C L ++ + +GGPLVN +G +VG+N + LS A+ + K +E+ +
Sbjct: 264 ECSELLVSSCEITMAGTGGPLVNYNGHVVGINFFEENQTPFLSMAI----VFKCLEHHQI 319
Query: 323 NGRVVRPWLGLKMLDLNPMIIAQLKERSSSFPDVKNGVLVPMVTPGSPAEHAGFRPGDVV 382
GR++RPW+G + + ++ L+ F DV NG+ + V GSPA+ AG GD++
Sbjct: 320 FGRIIRPWIGFWFTSIQMVPLSHLEHIYRKFSDVDNGLYISNVAEGSPADIAGICQGDIL 379
Query: 383 VEFDGKLVESIKEIIDIMGDKVGVPFKVLVKRAN------NVTVSLTVIPEEADSS 432
++ GK + + E ++ DK + + N +TV + VI E D S
Sbjct: 380 MKCGGKFLSTAPEFGAMLMDKCKETMEEYDQETNGDFSAKRITVEI-VIKRENDGS 434
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,765,344
Number of extensions: 542139
Number of successful extensions: 1142
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1140
Number of HSP's successfully gapped: 5
Length of query: 433
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 329
Effective length of database: 11,605,545
Effective search space: 3818224305
Effective search space used: 3818224305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)