Os05g0568900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protease Do-like 1, chloroplast precursor (EC 3.4.21.-).
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Os05g0568900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protease Do-like 1, chloroplast precursor (EC 3.4.21.-).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.4 | 0.302 | 11.4 | 1.02 | 0.751 | -0.476 | 0.388 | 8.8 | -0.301 | 6.33 | 31.22 | 5020 | -- | -- |
| 54.22 | 0.343 | 11.5 | -0.242 | 0.719 | 0.414 | 0.228 | -- | -0.306 | 6.74 | 32.86 | 18768 | -- | -- |
| 41.73 | 0.301 | 11.4 | 1.05 | 0.753 | -0.495 | -- | 8.94 | -0.304 | 6.21 | 31.28 | 5026 | -- | -- |
| 45.5 | 0.314 | 11.5 | -0.374 | 0.763 | 0.551 | -- | -- | -0.31 | 6.37 | 31.76 | 4456 | -- | -- |
| 69.99 | 0.39 | 11.4 | 1.1 | -- | -0.581 | -- | 10.1 | -0.285 | -- | 31.7 | 4366 | -- | -- |
| 57.23 | 0.355 | 11.5 | -0.26 | 0.763 | -- | 0.354 | -- | -0.397 | 6.07 | -- | -- | -- | -- |
| 57.52 | 0.355 | 11.6 | -0.258 | 0.765 | -- | -- | -- | -0.399 | 5.98 | -- | -- | -- | -- |
| 74.08 | 0.401 | 11.5 | -0.387 | -- | 0.63 | -- | -- | -0.275 | -- | 31.1 | 4321 | -- | -- |
| 49.24 | 0.327 | 11.5 | -- | 0.751 | 0.526 | -- | -- | -0.268 | 6.17 | 31.18 | 4411 | -- | -- |
| 87.87 | 0.438 | 11.6 | -0.235 | -- | -- | -- | -- | -0.381 | -- | -- | -- | -- | -- |
| 59.27 | 0.36 | 11.5 | -- | 0.761 | -- | -- | -- | -0.37 | 6 | -- | -- | -- | -- |
| 77.87 | 0.411 | 11.5 | -- | -- | 0.558 | -- | -- | -0.249 | -- | 30.7 | 4319 | -- | -- |
| 89.33 | 0.441 | 11.6 | -- | -- | -- | -- | -- | -0.355 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.66 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 38 | 41.95 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 55 | 42.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 57 | 42.04 | temperature | 30 | 1440 | > th | dose dependent | sin | 7 | NA |
| 60 | 42.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 61 | 42.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 64 | 42.08 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 68 | 42.11 | temperature | 30 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 90 | 42.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 91 | 42.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 96 | 42.16 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 174 | 42.27 | temperature | 30 | 4320 | > th | dose dependent | sin | 1 | NA |
| 206 | 42.27 | temperature | 30 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 207 | 42.28 | temperature | 30 | 1440 | < th | dose independent | sin | 9 | NA |
| 208 | 42.28 | temperature | 30 | 4320 | > th | dose dependent | sin | 23 | NA |
| 324 | 42.33 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 474 | 42.39 | temperature | 30 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 515 | 42.46 | temperature | 30 | 1440 | > th | dose independent | sin | 8 | NA |
| 625 | 42.60 | temperature | 25 | 4320 | > th | dose dependent | rect. | 2 | 5 |
| 860 | 42.76 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 8 |
| 878 | 42.78 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 909 | 42.81 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 953 | 42.86 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 10 |