BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0568900 Os05g0568900|AK067365
(437 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0568900 Similar to Protease Do-like 1, chloroplast pre... 709 0.0
Os04g0459900 Peptidase S1C, HrtA/DegP2/Q/S family protein 286 2e-77
Os12g0616600 Peptidase S1C, HrtA/DegP2/Q/S family protein 152 7e-37
Os11g0246600 Peptidase S1C, HrtA/DegP2/Q/S family protein 87 2e-17
Os06g0234100 Peptidase S1C, HrtA/DegP2/Q/S family protein 66 4e-11
>Os05g0568900 Similar to Protease Do-like 1, chloroplast precursor (EC 3.4.21.-)
Length = 437
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/412 (88%), Positives = 366/412 (88%)
Query: 26 IKHLACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRDLLPDETGRILSSATGXXX 85
IKHLAC LRDLLPDETGRILSSATG
Sbjct: 26 IKHLACAASRSPSPGPSSSRSLALPSPSASASPWPWPRRLRDLLPDETGRILSSATGSLI 85
Query: 86 XXXXXXXXXXGDAGSASAFVVATPRKLQADELATVRLFQENTPSVVYITNLAVRQDAFTL 145
GDAGSASAFVVATPRKLQADELATVRLFQENTPSVVYITNLAVRQDAFTL
Sbjct: 86 VALASAALILGDAGSASAFVVATPRKLQADELATVRLFQENTPSVVYITNLAVRQDAFTL 145
Query: 146 DVLEVPQGSGSGFVWDKSGHIVTNFHVIRGASDLRVTLADQTVYEAQVVGFDQDKDVAVL 205
DVLEVPQGSGSGFVWDKSGHIVTNFHVIRGASDLRVTLADQTVYEAQVVGFDQDKDVAVL
Sbjct: 146 DVLEVPQGSGSGFVWDKSGHIVTNFHVIRGASDLRVTLADQTVYEAQVVGFDQDKDVAVL 205
Query: 206 RIKAPTDKLRPVPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPI 265
RIKAPTDKLRPVPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPI
Sbjct: 206 RIKAPTDKLRPVPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPI 265
Query: 266 QDVIQTDAAINPGNSGGPLLDSSGNLIGVNTAIYSPSGASSGVGFSIPVDTVGGIVDQLI 325
QDVIQTDAAINPGNSGGPLLDSSGNLIGVNTAIYSPSGASSGVGFSIPVDTVGGIVDQLI
Sbjct: 266 QDVIQTDAAINPGNSGGPLLDSSGNLIGVNTAIYSPSGASSGVGFSIPVDTVGGIVDQLI 325
Query: 326 KFGKVTRPILGIKFAPDQSVEQLGLSGVLVLDAPPNGPAGKAGLQSTKRDSYGRLILGDI 385
KFGKVTRPILGIKFAPDQSVEQLGLSGVLVLDAPPNGPAGKAGLQSTKRDSYGRLILGDI
Sbjct: 326 KFGKVTRPILGIKFAPDQSVEQLGLSGVLVLDAPPNGPAGKAGLQSTKRDSYGRLILGDI 385
Query: 386 ITSVNGTKVTNGSDLYRILDQCKVGEKVTVEVLRGDQKEKIPVILEPKPDES 437
ITSVNGTKVTNGSDLYRILDQCKVGEKVTVEVLRGDQKEKIPVILEPKPDES
Sbjct: 386 ITSVNGTKVTNGSDLYRILDQCKVGEKVTVEVLRGDQKEKIPVILEPKPDES 437
>Os04g0459900 Peptidase S1C, HrtA/DegP2/Q/S family protein
Length = 445
Score = 286 bits (732), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 162/330 (49%), Positives = 215/330 (65%), Gaps = 15/330 (4%)
Query: 116 ELATVRLFQENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVWDKSGHIVTNFHVIRG 175
E LF+ NT SVV I + +R V+E+P+G+GSG VWD SGHIVTN+HV+
Sbjct: 113 EKRIAELFETNTYSVVNIFDATLRPQLNVTGVVEIPEGNGSGVVWDDSGHIVTNYHVVGN 172
Query: 176 A-----------SDLRVTLAD--QTVYEAQVVGFDQDKDVAVLRIKAPTDKLRPVPVGVS 222
A + + + AD Q +E ++VG D+ KD+AVL++ APTD L+P+ VG S
Sbjct: 173 ALSKKPKPGEVVARVNILAADGIQKNFEGKLVGADRSKDLAVLKVDAPTDLLKPINVGQS 232
Query: 223 ADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSGG 282
+ L VGQ+ AIGNPFG DH LT GVISGL R+I S A G I IQTDAAINPGNSGG
Sbjct: 233 SALRVGQQCLAIGNPFGFDHALTVGVISGLNRDIFSQA-GVTIGGGIQTDAAINPGNSGG 291
Query: 283 PLLDSSGNLIGVNTAIYSPSGASSGVGFSIPVDTVGGIVDQLIKFGKVTRPILGIKFAPD 342
PLLDS G++IG+NTAI++ +G S+GVGF+IP TV I QLI+FGKV R L ++FAPD
Sbjct: 292 PLLDSKGHMIGINTAIFTQTGTSAGVGFAIPSSTVLKIAPQLIQFGKVRRAGLNVEFAPD 351
Query: 343 QSVEQLGL-SGVLVLDAPPNGPAGKAGLQSTKRDSYGRLILGDIITSVNGTKVTNGSDLY 401
QL + +G L+L P A KAGL T R G ++LGD+I +V+G + SDL
Sbjct: 352 PIAYQLNVRTGSLILQVPGGSAAAKAGLVPTSRGFAGNIVLGDVIVAVDGKPIKGKSDLS 411
Query: 402 RILDQCKVGEKVTVEVLRGDQKEKIPVILE 431
R+LD VG+KV++ + RG + ++ + LE
Sbjct: 412 RVLDDYGVGDKVSLTIQRGAETLEVTLPLE 441
>Os12g0616600 Peptidase S1C, HrtA/DegP2/Q/S family protein
Length = 160
Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 83/141 (58%), Positives = 102/141 (72%), Gaps = 3/141 (2%)
Query: 190 EAQVVGFDQDKDVAVLRIKAPTDKLRPVPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVI 249
E ++VG D D+AVL++ DKLRP +G S L VGQ FAIGNP+G +HTLTTGV+
Sbjct: 14 EGRLVGCDPSYDLAVLKVDVDGDKLRPALIGTSKGLRVGQSCFAIGNPYGYEHTLTTGVV 73
Query: 250 SGLRREISSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGNLIGVNTAIYSP--SGASSG 307
SGL REI S GRPI+ IQTDAAIN GNSGGPL+DS G++IGVNTA ++ +G SSG
Sbjct: 74 SGLGREIPS-PNGRPIRGAIQTDAAINSGNSGGPLIDSYGHVIGVNTATFTRKGTGISSG 132
Query: 308 VGFSIPVDTVGGIVDQLIKFG 328
V F+IP+DTV V LI +G
Sbjct: 133 VNFAIPIDTVVQSVPNLIVYG 153
>Os11g0246600 Peptidase S1C, HrtA/DegP2/Q/S family protein
Length = 433
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 129/292 (44%), Gaps = 74/292 (25%)
Query: 155 GSGFVWDKSGHIVTNFHVI----------RGASDLRVTLADQTVYEAQVVGFDQDKDVAV 204
GSG + D G I+T HV+ RG + VTL D +E V+ D+ D+AV
Sbjct: 176 GSGTIIDPDGTILTCAHVVLDFQSTKPILRG--KVSVTLQDGREFEGTVLNADRHSDIAV 233
Query: 205 LRIKAPTDKLRPVP---VGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAAT 261
++IK+ T P+P +G S+ L G V A+G P L +T+T G+
Sbjct: 234 VKIKSKT----PLPSANLGSSSKLRPGDWVVALGCPLSLQNTVTAGI------------- 276
Query: 262 GRPIQDVIQTDAAINPGNSGGPLLDSSGNLIGVNTAIYSPSGASSGVGFSIPVDTVGGIV 321
GNSGGPL++ G ++GVN A+ G+ F++P+D++ IV
Sbjct: 277 ----------------GNSGGPLVNLDGEIVGVNVMKV---WAADGLSFAVPIDSIVKIV 317
Query: 322 DQLIKFGKVTRPILGIKF--APDQSVEQLG---------LSGVLVLDAPPNGPAGKAGLQ 370
+ K G+V RP LG+K + QL +GVLV P PA AG +
Sbjct: 318 ENFKKNGRVVRPWLGLKMLDLNPMIIAQLKERSSSFPDVKNGVLVPMVTPGSPAEHAGFR 377
Query: 371 STKRDSYGRLILGDIITSVNGTKVTNGSDLYRILDQCKVGEKVTVEVLRGDQ 422
GD++ +G V + ++ I+ KVG V V R +
Sbjct: 378 P-----------GDVVVEFDGKLVESIKEIIDIMGD-KVGVPFKVLVKRANN 417
>Os06g0234100 Peptidase S1C, HrtA/DegP2/Q/S family protein
Length = 628
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 22/273 (8%)
Query: 164 GH-IVTNFHVIRGASDLRVT-LADQTVYEAQVVGFDQDKDVAVLRIKAPTDKLRPVPVGV 221
GH ++TN H + + +++ T Y A V+ + D+A+L ++ P+
Sbjct: 201 GHRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWKGVSPLEF 260
Query: 222 SADLLVGQKVFAIGNPFGLDH-TLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNS 280
+ + V +G P G D ++T+GV+S R EI S G +Q DAAIN GNS
Sbjct: 261 GSLPALQDAVTVVGYPIGGDTISVTSGVVS--RIEILSYVHGSTELLGLQIDAAINSGNS 318
Query: 281 GGPLLDSSGNLIGVNTAIYSPSGASSGVGFSIPVDTVGGIVDQLIKFGKVT-RPILGIKF 339
GGP + G +G+ + +G+ IP + + K G+ T PILGI++
Sbjct: 319 GGPAFNDKGKCVGIAFQSLKHEDVEN-IGYVIPTPVINHFIQDYEKSGEYTGFPILGIEW 377
Query: 340 APDQSVEQLGLSGVLVLDAPPNGPAGKAGLQSTKRDSYGRLILGDIITSVNGTKVTN-GS 398
Q +E L + + + G + ++ T +S G L DII S +G + N G+
Sbjct: 378 ---QKMENPDLRKAMGMKSDQKGVRVRR-VEPTAPES-GCLQPSDIILSFDGIDIANDGT 432
Query: 399 DLYR---------ILDQCKVGEKVTVEVLRGDQ 422
+R ++ Q GEK V++LR +
Sbjct: 433 VPFRHGERIGFSYLISQKYTGEKAHVKILRNSK 465
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.137 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,695,218
Number of extensions: 547202
Number of successful extensions: 1240
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1236
Number of HSP's successfully gapped: 7
Length of query: 437
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 333
Effective length of database: 11,605,545
Effective search space: 3864646485
Effective search space used: 3864646485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)