Os06g0234100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase S1C, HrtA/DegP2/Q/S family protein.
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Os06g0234100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase S1C, HrtA/DegP2/Q/S family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56 | 0.352 | 8.49 | -0.0345 | 0.538 | -0.569 | -0.218 | -1.41 | -0.271 | 8.3 | 29.2 | 249 | -- | -- |
| 57.45 | 0.353 | 8.49 | -0.108 | 0.588 | -0.687 | -0.235 | -- | -0.266 | 8.28 | 29.58 | 296 | -- | -- |
| 56.13 | 0.349 | 8.48 | -0.0232 | 0.541 | -0.557 | -- | -1.54 | -0.266 | 8.44 | 29.28 | 255 | -- | -- |
| 57.02 | 0.352 | 8.49 | -0.199 | 0.559 | -0.742 | -- | -- | -0.264 | 8.52 | 29.61 | 277 | -- | -- |
| 69.27 | 0.388 | 8.51 | -0.08 | -- | -0.449 | -- | -0.879 | -0.281 | -- | 29.2 | 132 | -- | -- |
| 70.18 | 0.393 | 8.5 | -0.107 | 0.439 | -- | 0.176 | -- | -0.272 | 11 | -- | -- | -- | -- |
| 70.28 | 0.393 | 8.5 | -0.101 | 0.439 | -- | -- | -- | -0.272 | 10.8 | -- | -- | -- | -- |
| 69.7 | 0.389 | 8.52 | -0.188 | -- | -0.5 | -- | -- | -0.29 | -- | 29.21 | 109 | -- | -- |
| 58.19 | 0.355 | 8.49 | -- | 0.538 | -0.698 | -- | -- | -0.243 | 8.74 | 29.7 | 277 | -- | -- |
| 82.24 | 0.424 | 8.51 | -0.11 | -- | -- | -- | -- | -0.274 | -- | -- | -- | -- | -- |
| 70.55 | 0.393 | 8.5 | -- | 0.44 | -- | -- | -- | -0.26 | 10.8 | -- | -- | -- | -- |
| 70.62 | 0.391 | 8.51 | -- | -- | -0.482 | -- | -- | -0.271 | -- | 29.2 | 98 | -- | -- |
| 82.56 | 0.424 | 8.51 | -- | -- | -- | -- | -- | -0.262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.79 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 20 |
| 2 | 50.09 | temperature | 30 | 90 | < th | dose independent | rect. | 9 | 19 |
| 3 | 50.21 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 10 |
| 21 | 52.11 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 18 |
| 24 | 52.37 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 5 |
| 31 | 52.48 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 37 | 52.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 11 |
| 52 | 53.21 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 65 | 53.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 79 | 53.60 | temperature | 10 | 30 | > th | dose dependent | rect. | 5 | 15 |
| 113 | 54.00 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 13 |
| 196 | 54.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 238 | 55.12 | temperature | 15 | 270 | > th | dose independent | rect. | 7 | 20 |
| 239 | 55.12 | temperature | 15 | 720 | > th | dose dependent | sin | 4 | NA |
| 274 | 55.41 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 10 |
| 294 | 55.48 | temperature | 30 | 270 | < th | dose independent | sin | 0 | NA |
| 318 | 55.60 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 20 | 9 |
| 361 | 55.78 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 427 | 55.96 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 484 | 56.13 | temperature | 15 | 10 | > th | dose independent | rect. | 20 | 9 |
| 489 | 56.15 | temperature | 30 | 270 | < th | dose independent | rect. | 18 | 23 |
| 513 | 56.22 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 16 |
| 557 | 56.32 | temperature | 15 | 270 | > th | dose independent | rect. | 18 | 9 |
| 579 | 56.38 | temperature | 30 | 720 | < th | dose independent | sin | 8 | NA |
| 612 | 56.43 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 637 | 56.51 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 638 | 56.52 | temperature | 30 | 270 | < th | dose independent | rect. | 20 | 23 |
| 640 | 56.52 | temperature | 10 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 641 | 56.52 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 642 | 56.53 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 4 |
| 660 | 56.57 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 8 |
| 723 | 56.74 | humidity | 50 | 270 | > th | dose independent | rect. | 7 | 20 |
| 736 | 56.77 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 7 | 20 |
| 737 | 56.77 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 785 | 56.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 868 | 56.94 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 880 | 56.96 | temperature | 30 | 270 | > th | dose independent | sin | 1 | NA |
| 906 | 57.00 | temperature | 15 | 10 | > th | dose independent | rect. | 11 | 18 |
| 926 | 57.03 | humidity | 80 | 270 | > th | dose independent | rect. | 3 | 4 |
| 960 | 57.12 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 10 |
| 974 | 57.12 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 23 |
| 978 | 57.13 | humidity | 50 | 270 | > th | dose dependent | rect. | 3 | 4 |