BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0234100 Os06g0234100|AK120193
(628 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0234100 Peptidase S1C, HrtA/DegP2/Q/S family protein 997 0.0
AK102920 472 e-133
Os05g0417100 Peptidase S1C, HrtA/DegP2/Q/S family protein 471 e-133
Os02g0742500 Peptidase S1C, HrtA/DegP2/Q/S family protein 257 2e-68
Os05g0147500 Peptidase S1C, HrtA/DegP2/Q/S family protein 252 5e-67
Os05g0568900 Similar to Protease Do-like 1, chloroplast pre... 66 6e-11
>Os06g0234100 Peptidase S1C, HrtA/DegP2/Q/S family protein
Length = 628
Score = 997 bits (2578), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/483 (98%), Positives = 478/483 (98%)
Query: 146 EVPVVEPLRWEQVAKVMPSMDAVVKVFCVHTEPNFSLPWQRKRQYXXXXXGFIIGGHRVL 205
EVPVVEPLRWEQVAKVMPSMDAVVKVFCVHTEPNFSLPWQRKRQY GFIIGGHRVL
Sbjct: 146 EVPVVEPLRWEQVAKVMPSMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFIIGGHRVL 205
Query: 206 TNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWKGVSPLEFGSLPA 265
TNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWKGVSPLEFGSLPA
Sbjct: 206 TNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWKGVSPLEFGSLPA 265
Query: 266 LQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFND 325
LQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFND
Sbjct: 266 LQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFND 325
Query: 326 KGKCVGIAFQSLKHEDVENIGYVIPTPVINHFIQDYEKSGEYTGFPILGIEWQKMENPDL 385
KGKCVGIAFQSLKHEDVENIGYVIPTPVINHFIQDYEKSGEYTGFPILGIEWQKMENPDL
Sbjct: 326 KGKCVGIAFQSLKHEDVENIGYVIPTPVINHFIQDYEKSGEYTGFPILGIEWQKMENPDL 385
Query: 386 RKAMGMKSDQKGVRVRRVEPTAPESGCLQPSDIILSFDGIDIANDGTVPFRHGERIGFSY 445
RKAMGMKSDQKGVRVRRVEPTAPESGCLQPSDIILSFDGIDIANDGTVPFRHGERIGFSY
Sbjct: 386 RKAMGMKSDQKGVRVRRVEPTAPESGCLQPSDIILSFDGIDIANDGTVPFRHGERIGFSY 445
Query: 446 LISQKYTGEKAHVKILRNSKVLEFNIKLATHKRLIPAHIKGRPPSYYIVAGFVFMVVSVP 505
LISQKYTGEKAHVKILRNSKVLEFNIKLATHKRLIPAHIKGRPPSYYIVAGFVFMVVSVP
Sbjct: 446 LISQKYTGEKAHVKILRNSKVLEFNIKLATHKRLIPAHIKGRPPSYYIVAGFVFMVVSVP 505
Query: 506 YLRSEYGKDYEYDAPVKLLDKHLHAMAQSPDEQLVVVSQVLVADINIGYEEIVNIQVLSF 565
YLRSEYGKDYEYDAPVKLLDKHLHAMAQSPDEQLVVVSQVLVADINIGYEEIVNIQVLSF
Sbjct: 506 YLRSEYGKDYEYDAPVKLLDKHLHAMAQSPDEQLVVVSQVLVADINIGYEEIVNIQVLSF 565
Query: 566 NGKPVKNLKHLATMVEDCNEEYLKFDMDYDQLVVLEAKTAKAATQDILTTHCIPSAMSED 625
NGKPVKNLKHLATMVEDCNEEYLKFDMDYDQLVVLEAKTAKAATQDILTTHCIPSAMSED
Sbjct: 566 NGKPVKNLKHLATMVEDCNEEYLKFDMDYDQLVVLEAKTAKAATQDILTTHCIPSAMSED 625
Query: 626 LRT 628
LRT
Sbjct: 626 LRT 628
>AK102920
Length = 618
Score = 472 bits (1214), Expect = e-133, Method: Compositional matrix adjust.
Identities = 238/468 (50%), Positives = 318/468 (67%), Gaps = 4/468 (0%)
Query: 159 AKVMPSMDAVVKVFCVHTEPNFSLPWQRKRQYXXXXXGFIIGGHRVLTNAHSVEHYTQVK 218
A V ++D+VVKVF V + PN+ LPWQ K Q GF+I G R++TNAH + +T V
Sbjct: 132 AAVELALDSVVKVFTVSSSPNYFLPWQNKAQRESMGSGFVIPGRRIITNAHVIADHTFVL 191
Query: 219 LKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWKGVSPLEFGSLPALQDAVTVVGYPIG 278
++K GS TKY A V A+G ECD+A+L V+ +EFW G++ LE G +P LQ+AV VVGYP G
Sbjct: 192 VRKHGSPTKYKAEVQAVGHECDLALLKVDSEEFWDGMNSLELGDIPFLQEAVAVVGYPQG 251
Query: 279 GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLK 338
GD ISVT GVVSR+E Y HG+T+L+ +QIDAAIN GNSGGPA K G+AFQ+L
Sbjct: 252 GDNISVTKGVVSRVEPTQYAHGATQLMAIQIDAAINPGNSGGPAIMGD-KVAGVAFQNLS 310
Query: 339 HEDVENIGYVIPTPVINHFIQDYEKSGEYTGFPILGIEWQKMENPDLRKAMGMKSDQKGV 398
ENIGY+IP PVI FI E+SG+Y+GF LGI Q EN LR+ GMK D GV
Sbjct: 311 --GAENIGYIIPVPVIKRFISGVEESGKYSGFCTLGISCQATENIQLRECFGMKPDLTGV 368
Query: 399 RVRRVEPTAPESGCLQPSDIILSFDGIDIANDGTVPFRHGERIGFSYLISQKYTGEKAHV 458
V R+ P + L+ DI+L FDG+ IANDGTVPFR+ ERI F +L+S K GE A +
Sbjct: 369 LVSRINPLSDAHRVLKKDDILLEFDGVPIANDGTVPFRNRERITFDHLVSMKKPGEMAVL 428
Query: 459 KILRNSKVLEFNIKLATHKRLIPAHIKGRPPSYYIVAGFVFMVVSVPYLRSEYGKDYEYD 518
K+LR+ K E N+ + + L+P H + PSYYI AGFVF+ ++ PYL E+G+D+ +
Sbjct: 429 KVLRDGKEHELNVTVRPLQPLVPVHQFDKLPSYYIFAGFVFIPLTQPYLH-EFGEDWYNN 487
Query: 519 APVKLLDKHLHAMAQSPDEQLVVVSQVLVADINIGYEEIVNIQVLSFNGKPVKNLKHLAT 578
+P +L ++ L + + EQLV++SQVL+ DIN+GYE + +QV NG V+NLKHL +
Sbjct: 488 SPRRLCERALRELPKKAAEQLVILSQVLMDDINVGYERLAELQVKKVNGVEVENLKHLCS 547
Query: 579 MVEDCNEEYLKFDMDYDQLVVLEAKTAKAATQDILTTHCIPSAMSEDL 626
+VE C EE L+FD+D ++++VL+ + AK AT IL H IPSA+S DL
Sbjct: 548 LVESCTEENLRFDLDDERVIVLKYQNAKLATSRILKRHRIPSAISADL 595
>Os05g0417100 Peptidase S1C, HrtA/DegP2/Q/S family protein
Length = 614
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 238/468 (50%), Positives = 318/468 (67%), Gaps = 4/468 (0%)
Query: 159 AKVMPSMDAVVKVFCVHTEPNFSLPWQRKRQYXXXXXGFIIGGHRVLTNAHSVEHYTQVK 218
A V ++D+VVKVF V + PN+ LPWQ K Q GF+I G R++TNAH + +T V
Sbjct: 128 AAVELALDSVVKVFTVSSSPNYFLPWQNKAQRESMGSGFVIPGRRIITNAHVIADHTFVL 187
Query: 219 LKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWKGVSPLEFGSLPALQDAVTVVGYPIG 278
++K GS TKY A V A+G ECD+A+L V+ +EFW G++ LE G +P LQ+AV VVGYP G
Sbjct: 188 VRKHGSPTKYKAEVQAVGHECDLALLKVDSEEFWDGMNSLELGDIPFLQEAVAVVGYPQG 247
Query: 279 GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLK 338
GD ISVT GVVSR+E Y HG+T+L+ +QIDAAIN GNSGGPA K G+AFQ+L
Sbjct: 248 GDNISVTKGVVSRVEPTQYAHGATQLMAIQIDAAINPGNSGGPAIMGD-KVAGVAFQNLS 306
Query: 339 HEDVENIGYVIPTPVINHFIQDYEKSGEYTGFPILGIEWQKMENPDLRKAMGMKSDQKGV 398
ENIGY+IP PVI FI E+SG+Y+GF LGI Q EN LR+ GMK D GV
Sbjct: 307 --GAENIGYIIPVPVIKRFISGVEESGKYSGFCTLGISCQATENIQLRECFGMKPDLTGV 364
Query: 399 RVRRVEPTAPESGCLQPSDIILSFDGIDIANDGTVPFRHGERIGFSYLISQKYTGEKAHV 458
V R+ P + L+ DI+L FDG+ IANDGTVPFR+ ERI F +L+S K GE A +
Sbjct: 365 LVSRINPLSDAHRVLKKDDILLEFDGVPIANDGTVPFRNRERITFDHLVSMKKPGEMAVL 424
Query: 459 KILRNSKVLEFNIKLATHKRLIPAHIKGRPPSYYIVAGFVFMVVSVPYLRSEYGKDYEYD 518
K+LR+ K E N+ + + L+P H + PSYYI AGFVF+ ++ PYL E+G+D+ +
Sbjct: 425 KVLRDGKEHELNVTVRPLQPLVPVHQFDKLPSYYIFAGFVFIPLTQPYLH-EFGEDWYNN 483
Query: 519 APVKLLDKHLHAMAQSPDEQLVVVSQVLVADINIGYEEIVNIQVLSFNGKPVKNLKHLAT 578
+P +L ++ L + + EQLV++SQVL+ DIN+GYE + +QV NG V+NLKHL +
Sbjct: 484 SPRRLCERALRELPKKAAEQLVILSQVLMDDINVGYERLAELQVKKVNGVEVENLKHLCS 543
Query: 579 MVEDCNEEYLKFDMDYDQLVVLEAKTAKAATQDILTTHCIPSAMSEDL 626
+VE C EE L+FD+D ++++VL+ + AK AT IL H IPSA+S DL
Sbjct: 544 LVESCTEENLRFDLDDERVIVLKYQNAKLATSRILKRHRIPSAISADL 591
>Os02g0742500 Peptidase S1C, HrtA/DegP2/Q/S family protein
Length = 139
Score = 257 bits (656), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/131 (94%), Positives = 125/131 (95%), Gaps = 2/131 (1%)
Query: 304 LLGL--QIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVINHFIQDY 361
LLG QIDAAINSGNSGGPAFND+GKCVGIAFQSLKHED ENIGYVIPTPVI HFIQDY
Sbjct: 1 LLGFYGQIDAAINSGNSGGPAFNDRGKCVGIAFQSLKHEDAENIGYVIPTPVIMHFIQDY 60
Query: 362 EKSGEYTGFPILGIEWQKMENPDLRKAMGMKSDQKGVRVRRVEPTAPESGCLQPSDIILS 421
EKSGEYTGFPILGIEWQKMENPDLRKAMGMK DQKGVRVRRVEPTAPESGCLQPSDIILS
Sbjct: 61 EKSGEYTGFPILGIEWQKMENPDLRKAMGMKPDQKGVRVRRVEPTAPESGCLQPSDIILS 120
Query: 422 FDGIDIANDGT 432
FDGIDIANDGT
Sbjct: 121 FDGIDIANDGT 131
>Os05g0147500 Peptidase S1C, HrtA/DegP2/Q/S family protein
Length = 276
Score = 252 bits (644), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 110/171 (64%), Positives = 141/171 (82%)
Query: 165 MDAVVKVFCVHTEPNFSLPWQRKRQYXXXXXGFIIGGHRVLTNAHSVEHYTQVKLKKRGS 224
++AVVKV+C H P++ LPWQ++RQ+ F+IG ++LTNAH VEH TQVK+K+RG
Sbjct: 104 LNAVVKVYCTHIAPDYGLPWQKQRQHASTGSAFMIGDGKLLTNAHCVEHDTQVKVKRRGD 163
Query: 225 DTKYLATVLAIGTECDIAMLTVEDDEFWKGVSPLEFGSLPALQDAVTVVGYPIGGDTISV 284
D KY+A VLA G ECD+A+L+VE++EFW+G PL+ G LP LQD+VTVVGYP+GGDTISV
Sbjct: 164 DKKYIAKVLARGIECDLALLSVENEEFWRGTEPLQLGRLPCLQDSVTVVGYPLGGDTISV 223
Query: 285 TSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQ 335
T GVVSRIE+ Y HG+++LLG+QIDAAIN GNSGGPAFND G+C+G+AFQ
Sbjct: 224 TKGVVSRIEVTPYAHGTSDLLGIQIDAAINPGNSGGPAFNDHGECIGVAFQ 274
>Os05g0568900 Similar to Protease Do-like 1, chloroplast precursor (EC 3.4.21.-)
Length = 437
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 22/273 (8%)
Query: 201 GHRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWKGVSPLEF 260
GH ++TN H + + +++ T Y A V+ + D+A+L ++ P+
Sbjct: 164 GH-IVTNFHVIRGASDLRVT-LADQTVYEAQVVGFDQDKDVAVLRIKAPTDKLRPVPVGV 221
Query: 261 GSLPALQDAVTVVGYPIGGDTISVTSGVVS--RIEILSYVHGSTELLGLQIDAAINSGNS 318
+ + V +G P G D ++T+GV+S R EI S G +Q DAAIN GNS
Sbjct: 222 SADLLVGQKVFAIGNPFGLDH-TLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNS 280
Query: 319 GGPAFNDKGKCVGIAFQSLKHEDVEN-IGYVIPTPVINHFIQDYEKSGEYTGFPILGIEW 377
GGP + G +G+ + +G+ IP + + K G+ T PILGI++
Sbjct: 281 GGPLLDSSGNLIGVNTAIYSPSGASSGVGFSIPVDTVGGIVDQLIKFGKVT-RPILGIKF 339
Query: 378 ---QKMENPDLRKAMGMKSDQKGVRVRR-VEPTAPES-GCLQPSDIILSFDGIDIANDGT 432
Q +E L + + + G + ++ T +S G L DII S +G + N G+
Sbjct: 340 APDQSVEQLGLSGVLVLDAPPNGPAGKAGLQSTKRDSYGRLILGDIITSVNGTKVTN-GS 398
Query: 433 VPFRHGERIGFSYLISQKYTGEKAHVKILRNSK 465
+R ++ Q GEK V++LR +
Sbjct: 399 DLYR---------ILDQCKVGEKVTVEVLRGDQ 422
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,964,283
Number of extensions: 694966
Number of successful extensions: 1796
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1793
Number of HSP's successfully gapped: 6
Length of query: 628
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 521
Effective length of database: 11,448,903
Effective search space: 5964878463
Effective search space used: 5964878463
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)