Os02g0742500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase S1C, HrtA/DegP2/Q/S family protein.
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Os02g0742500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase S1C, HrtA/DegP2/Q/S family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.27 | 0.171 | 11.6 | 0.0727 | 0.315 | -0.608 | -0.0027 | -0.139 | -0.00356 | 4.29 | 19.8 | 4777 | -- | -- |
| 13.29 | 0.17 | 11.6 | 0.0591 | 0.314 | -0.567 | 0.0153 | -- | -0.00613 | 4.27 | 20 | 4772 | -- | -- |
| 13.27 | 0.17 | 11.6 | 0.0726 | 0.315 | -0.608 | -- | -0.139 | -0.00354 | 4.29 | 19.8 | 4776 | -- | -- |
| 13.29 | 0.17 | 11.6 | 0.0611 | 0.314 | -0.565 | -- | -- | -0.00776 | 4.29 | 20.1 | 4775 | -- | -- |
| 18.14 | 0.198 | 11.6 | 0.0864 | -- | -0.619 | -- | -0.112 | 0.00414 | -- | 19.85 | 3999 | -- | -- |
| 18.62 | 0.202 | 11.6 | 0.411 | 0.318 | -- | -0.00556 | -- | 0.146 | 4.21 | -- | -- | -- | -- |
| 18.62 | 0.202 | 11.6 | 0.411 | 0.318 | -- | -- | -- | 0.146 | 4.2 | -- | -- | -- | -- |
| 18.16 | 0.198 | 11.6 | 0.0711 | -- | -0.597 | -- | -- | 0.000577 | -- | 19.82 | 3999 | -- | -- |
| 13.35 | 0.17 | 11.6 | -- | 0.308 | -0.596 | -- | -- | -0.0177 | 4.28 | 20.1 | 4777 | -- | -- |
| 24.07 | 0.229 | 11.6 | 0.424 | -- | -- | -- | -- | 0.154 | -- | -- | -- | -- | -- |
| 23.08 | 0.225 | 11.6 | -- | 0.325 | -- | -- | -- | 0.1 | 4.18 | -- | -- | -- | -- |
| 18.24 | 0.199 | 11.6 | -- | -- | -0.632 | -- | -- | -0.0171 | -- | 19.96 | 4026 | -- | -- |
| 28.82 | 0.251 | 11.6 | -- | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.10 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 6 | 13.13 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 8 | 13.13 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 19 | 13.15 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 31 | 13.16 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 35 | 13.17 | temperature | 20 | 4320 | > th | dose independent | sin | 13 | NA |
| 50 | 13.18 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 90 | 13.20 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 91 | 13.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 152 | 13.24 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 6 |
| 169 | 13.26 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 220 | 13.28 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 2 |
| 304 | 13.31 | temperature | 30 | 4320 | < th | dose dependent | rect. | 2 | 3 |
| 317 | 13.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 331 | 13.32 | temperature | 30 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 540 | 13.38 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 580 | 13.39 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 634 | 13.40 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 677 | 13.41 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 680 | 13.41 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 711 | 13.42 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 712 | 13.42 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 762 | 13.43 | temperature | 25 | 4320 | < th | dose dependent | sin | 8 | NA |
| 892 | 13.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 5 |