BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0742500 Os02g0742500|J065118H16
(139 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G40200.1 | chr5:16070402-16073101 FORWARD LENGTH=593 238 8e-64
AT2G47940.1 | chr2:19618372-19622164 REVERSE LENGTH=608 159 6e-40
AT5G36950.1 | chr5:14594992-14598216 FORWARD LENGTH=587 123 4e-29
AT1G65630.1 | chr1:24406542-24409068 REVERSE LENGTH=560 109 4e-25
AT1G65640.1 | chr1:24411695-24413527 REVERSE LENGTH=437 107 2e-24
AT5G40560.1 | chr5:16244543-16246519 FORWARD LENGTH=411 98 2e-21
AT3G16540.1 | chr3:5626290-5628857 REVERSE LENGTH=556 87 3e-18
AT3G16550.1 | chr3:5629920-5632417 REVERSE LENGTH=492 79 1e-15
AT5G27660.1 | chr5:9789835-9792235 REVERSE LENGTH=429 64 2e-11
AT3G27925.1 | chr3:10366659-10368864 REVERSE LENGTH=440 46 8e-06
>AT5G40200.1 | chr5:16070402-16073101 FORWARD LENGTH=593
Length = 592
Score = 238 bits (607), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 111/131 (84%), Positives = 122/131 (93%), Gaps = 2/131 (1%)
Query: 1 LLGFYGQIDAAINSGNSGGPAFNDRGKCVGIAFQSLKHEDAENIGYVIPTPVIMHFIQDY 60
LLG QIDAAINSGNSGGPAFND+GKCVGIAFQSLKHEDAENIGYVIPTPVI+HFIQDY
Sbjct: 264 LLGL--QIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDAENIGYVIPTPVIVHFIQDY 321
Query: 61 EKSGEYTGFPILGIEWQKMENPDLRKAMGMKPDQKGVRVRRVEPTAPESGCLQPSDIILS 120
EK +YTGFP+LGIEWQKMENPDLRK+MGM+ QKGVR+RR+EPTAPES L+PSDIILS
Sbjct: 322 EKHDKYTGFPVLGIEWQKMENPDLRKSMGMESHQKGVRIRRIEPTAPESQVLKPSDIILS 381
Query: 121 FDGIDIANDGT 131
FDG++IANDGT
Sbjct: 382 FDGVNIANDGT 392
>AT2G47940.1 | chr2:19618372-19622164 REVERSE LENGTH=608
Length = 607
Score = 159 bits (401), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 75/131 (57%), Positives = 100/131 (76%), Gaps = 3/131 (2%)
Query: 1 LLGFYGQIDAAINSGNSGGPAFNDRGKCVGIAFQSLKHEDAENIGYVIPTPVIMHFIQDY 60
LLG QIDAAIN GNSGGPAFND+G+C+G+AFQ + E+ ENIGYVIPT V+ HF+ DY
Sbjct: 254 LLGI--QIDAAINPGNSGGPAFNDQGECIGVAFQVYRSEETENIGYVIPTTVVSHFLTDY 311
Query: 61 EKSGEYTGFPILGIEWQKMENPDLRKAMGMKPDQKGVRVRRVEPTAPESGCLQPSDIILS 120
E++G+YTG+P LG+ QK+ENP LR+ + + P +GV VRRVEPT+ S L+ D+I+S
Sbjct: 312 ERNGKYTGYPCLGVLLQKLENPALRECLKV-PTNEGVLVRRVEPTSDASKVLKEGDVIVS 370
Query: 121 FDGIDIANDGT 131
FD + + +GT
Sbjct: 371 FDDLHVGCEGT 381
>AT5G36950.1 | chr5:14594992-14598216 FORWARD LENGTH=587
Length = 586
Score = 123 bits (308), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 81/125 (64%), Gaps = 3/125 (2%)
Query: 7 QIDAAINSGNSGGPAFNDRGKCVGIAFQSLKHEDAENIGYVIPTPVIMHFIQDYEKSGEY 66
QIDAAIN GNSGGPA K G+AFQ+L AENIGY+IPTPVI HFI E+ G+Y
Sbjct: 255 QIDAAINPGNSGGPAIMG-NKVAGVAFQNLS--GAENIGYIIPTPVIKHFINGVEECGKY 311
Query: 67 TGFPILGIEWQKMENPDLRKAMGMKPDQKGVRVRRVEPTAPESGCLQPSDIILSFDGIDI 126
GF +G+ Q MEN +LR M + GV V ++ P + L+ D++L+FDG+ I
Sbjct: 312 IGFCSMGVSCQPMENGELRSGFQMSSEMTGVLVSKINPLSDAHKILKKDDVLLAFDGVPI 371
Query: 127 ANDGT 131
ANDGT
Sbjct: 372 ANDGT 376
>AT1G65630.1 | chr1:24406542-24409068 REVERSE LENGTH=560
Length = 559
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 80/132 (60%), Gaps = 5/132 (3%)
Query: 7 QIDAAINSGNSGGPAFNDRGKCVGIAFQSLKHEDAENIGYVIPTPVIMHFIQDYEKSGEY 66
QIDAAIN+GNSGGP K G+AF+SL + D+ IGY+IPTPVI HF+ E+SGE
Sbjct: 237 QIDAAINNGNSGGPVIMG-NKVAGVAFESLCYSDS--IGYIIPTPVIRHFLNAIEESGED 293
Query: 67 TGFPILGIEWQKMENPDLRKAMGMKPDQKGVRVRRVEPTAPESGCLQPSDIILSFDGIDI 126
F + + +QKM+N LRK M G+ + ++ P + L+ DIIL+ DG+ I
Sbjct: 294 VSFGSINLTYQKMDNDQLRKDFKMSDKMTGILINKINPLSDVHKVLKKDDIILAIDGVPI 353
Query: 127 ANDGTGQSHFLK 138
ND + HF K
Sbjct: 354 GNDSS--VHFRK 363
>AT1G65640.1 | chr1:24411695-24413527 REVERSE LENGTH=437
Length = 436
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 74/124 (59%), Gaps = 3/124 (2%)
Query: 7 QIDAAINSGNSGGPAFNDRGKCVGIAFQSLKHEDAENIGYVIPTPVIMHFIQDYEKSGEY 66
Q DAAIN GNSGGPA K G+AFQ K A+NIGY+IPTPVI HF+ E++G+Y
Sbjct: 215 QTDAAINPGNSGGPAIIG-NKMAGVAFQ--KDPSADNIGYIIPTPVIKHFLTAVEENGQY 271
Query: 67 TGFPILGIEWQKMENPDLRKAMGMKPDQKGVRVRRVEPTAPESGCLQPSDIILSFDGIDI 126
GF L I +Q MEN LR M P+ G+ + + P + L+ DIIL+ D + I
Sbjct: 272 GGFCTLDISYQLMENSQLRNHFKMGPEMTGILINEINPLSDAYKRLRKDDIILAIDDVLI 331
Query: 127 ANDG 130
ND
Sbjct: 332 GNDA 335
>AT5G40560.1 | chr5:16244543-16246519 FORWARD LENGTH=411
Length = 410
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 4/125 (3%)
Query: 7 QIDAAINSGNSGGPAFNDRGKCVGIAFQSLKHEDAENIGYVIPTPVIMHFIQDYEKSGEY 66
Q DAA+N GNSGGP K VG+AFQ+L H + NIG +IP PV+ HFI EK+G+Y
Sbjct: 106 QTDAAMNPGNSGGPVCIG-NKVVGVAFQTLGHSN--NIGCLIPAPVVKHFITGVEKTGQY 162
Query: 67 TGFPILGIEWQKMENPDLRKAMGMKPDQKGVRVRRVEPTAPESGCLQPSDIILSFDGIDI 126
GF L + +Q M+ R M + G+ + + + L+ D+ILS DG+ I
Sbjct: 163 VGFCSLNLSYQHMD-AQTRSHFKMNSEMTGILIYNINQHSDALNILKKYDVILSIDGVAI 221
Query: 127 ANDGT 131
NDGT
Sbjct: 222 ENDGT 226
>AT3G16540.1 | chr3:5626290-5628857 REVERSE LENGTH=556
Length = 555
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 7 QIDAAINSGNSGGPAFNDRGKCVGIAFQSLKHEDAENIGYVIPTPVIMHFIQDYEKSGEY 66
QIDA IN NSGGP K VG+ ++ IG+VIPTP+I HFI ++S +Y
Sbjct: 248 QIDATINDENSGGPVIMG-NKVVGVVYE---------IGFVIPTPIIKHFITSVQESRQY 297
Query: 67 TGFPILGIEWQKMENPDLRKAMGMKPDQKGVRVRRVEPTAPESGCLQPSDIILSFDGIDI 126
+ F L + +Q +EN +R M + G+ + ++ ++ L+ DIIL+ DG+ I
Sbjct: 298 SCFGSLDLSYQSLENVQIRNHFKMSHEMTGILINKINSSSGAYKILRKDDIILAIDGVPI 357
Query: 127 AND 129
ND
Sbjct: 358 GND 360
>AT3G16550.1 | chr3:5629920-5632417 REVERSE LENGTH=492
Length = 491
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 5/133 (3%)
Query: 7 QIDAAINSGNSGGPAFNDRGKCVGIAFQSLKHEDAENIGYVIPTPVIMHFIQDYEKSGEY 66
IDA GNSGGP K +G+ FQ L D ++ G VIPTP+I HFI E+S
Sbjct: 204 HIDATTYGGNSGGPVITG-DKVLGVLFQILG--DKKSTGVVIPTPIIRHFITGAEESSHN 260
Query: 67 TGFPILGIEWQKMENPDLRKAMGMKPDQKGVRVRRVEPTAPESGCLQPSDIILSFDGIDI 126
F L + Q M+N +R M P+ G+ + ++ ++ L+ DIIL+ DG+ +
Sbjct: 261 AVFGSLVLSCQSMKNAQIRNHFKMSPETTGILINKINSSSGAHKILRKDDIILAIDGVPV 320
Query: 127 ANDGTGQS--HFL 137
++ S HF+
Sbjct: 321 LSEMRRISFNHFI 333
>AT5G27660.1 | chr5:9789835-9792235 REVERSE LENGTH=429
Length = 428
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 11/137 (8%)
Query: 5 YGQIDAAINSGNSGGPAFNDRGKCVGIAFQSLKHEDAENIGYVIPTPVIMHFIQDYEKSG 64
Y Q D +IN+GNSGGP N G+ +G+ +K A+ +G+ +P + I+ ++KSG
Sbjct: 269 YLQTDCSINAGNSGGPLVNLDGEVIGVNI--MKVLAADGLGFSVPIDSVSKIIEHFKKSG 326
Query: 65 EYTGFPILGIEWQKMEN---PDLRKAMGMKPD-QKGVRVRRVEPTAP-ESGCLQPSDIIL 119
P +G++ ++ N L++ M PD ++GV V V P +P + +P D+++
Sbjct: 327 RVIR-PWIGLKMVELNNLIVAQLKERDPMFPDVERGVLVPTVIPGSPADRAGFKPGDVVV 385
Query: 120 SFDG---IDIANDGTGQ 133
FDG I+I +D G+
Sbjct: 386 RFDGKPVIEIMDDRVGK 402
>AT3G27925.1 | chr3:10366659-10368864 REVERSE LENGTH=440
Length = 439
Score = 45.8 bits (107), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 23/136 (16%)
Query: 7 QIDAAINSGNSGGPAFNDRGKCVGIAFQSLKHEDAEN-IGYVIPTPVIMHFIQDYEKSGE 65
Q DAAIN GNSGGP + G +GI A + +G+ IP + + + G+
Sbjct: 272 QTDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGK 331
Query: 66 YTGFPILGIEWQKMENPDLR-KAMGMKPDQKGVRVRRVEPTAPES------------GCL 112
T PILGI++ PD + +G+ GV V P+ P G L
Sbjct: 332 VTR-PILGIKFA----PDQSVEQLGV----SGVLVLDAPPSGPAGKAGLQSTKRDGYGRL 382
Query: 113 QPSDIILSFDGIDIAN 128
DII S +G ++N
Sbjct: 383 VLGDIITSVNGTKVSN 398
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.140 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,527,534
Number of extensions: 149696
Number of successful extensions: 272
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 10
Length of query: 139
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 51
Effective length of database: 8,693,961
Effective search space: 443392011
Effective search space used: 443392011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 106 (45.4 bits)