BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0742500 Os02g0742500|J065118H16
         (139 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0742500  Peptidase S1C, HrtA/DegP2/Q/S family protein        288   6e-79
Os06g0234100  Peptidase S1C, HrtA/DegP2/Q/S family protein        256   3e-69
AK102920                                                          129   5e-31
Os05g0417100  Peptidase S1C, HrtA/DegP2/Q/S family protein        129   5e-31

>Os02g0742500 Peptidase S1C, HrtA/DegP2/Q/S family protein
          Length = 139

 Score =  288 bits (738), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 139/139 (100%), Positives = 139/139 (100%)

Query: 1   LLGFYGQIDAAINSGNSGGPAFNDRGKCVGIAFQSLKHEDAENIGYVIPTPVIMHFIQDY 60
           LLGFYGQIDAAINSGNSGGPAFNDRGKCVGIAFQSLKHEDAENIGYVIPTPVIMHFIQDY
Sbjct: 1   LLGFYGQIDAAINSGNSGGPAFNDRGKCVGIAFQSLKHEDAENIGYVIPTPVIMHFIQDY 60

Query: 61  EKSGEYTGFPILGIEWQKMENPDLRKAMGMKPDQKGVRVRRVEPTAPESGCLQPSDIILS 120
           EKSGEYTGFPILGIEWQKMENPDLRKAMGMKPDQKGVRVRRVEPTAPESGCLQPSDIILS
Sbjct: 61  EKSGEYTGFPILGIEWQKMENPDLRKAMGMKPDQKGVRVRRVEPTAPESGCLQPSDIILS 120

Query: 121 FDGIDIANDGTGQSHFLKP 139
           FDGIDIANDGTGQSHFLKP
Sbjct: 121 FDGIDIANDGTGQSHFLKP 139



>Os06g0234100 Peptidase S1C, HrtA/DegP2/Q/S family protein
          Length = 628

 Score =  256 bits (655), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 124/131 (94%), Positives = 125/131 (95%), Gaps = 2/131 (1%)

Query: 1   LLGFYGQIDAAINSGNSGGPAFNDRGKCVGIAFQSLKHEDAENIGYVIPTPVIMHFIQDY 60
           LLG   QIDAAINSGNSGGPAFND+GKCVGIAFQSLKHED ENIGYVIPTPVI HFIQDY
Sbjct: 304 LLGL--QIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVINHFIQDY 361

Query: 61  EKSGEYTGFPILGIEWQKMENPDLRKAMGMKPDQKGVRVRRVEPTAPESGCLQPSDIILS 120
           EKSGEYTGFPILGIEWQKMENPDLRKAMGMK DQKGVRVRRVEPTAPESGCLQPSDIILS
Sbjct: 362 EKSGEYTGFPILGIEWQKMENPDLRKAMGMKSDQKGVRVRRVEPTAPESGCLQPSDIILS 421

Query: 121 FDGIDIANDGT 131
           FDGIDIANDGT
Sbjct: 422 FDGIDIANDGT 432



>AK102920 
          Length = 618

 Score =  129 bits (325), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 82/125 (65%), Gaps = 3/125 (2%)

Query: 7   QIDAAINSGNSGGPAFNDRGKCVGIAFQSLKHEDAENIGYVIPTPVIMHFIQDYEKSGEY 66
           QIDAAIN GNSGGPA     K  G+AFQ+L    AENIGY+IP PVI  FI   E+SG+Y
Sbjct: 281 QIDAAINPGNSGGPAIMG-DKVAGVAFQNLS--GAENIGYIIPVPVIKRFISGVEESGKY 337

Query: 67  TGFPILGIEWQKMENPDLRKAMGMKPDQKGVRVRRVEPTAPESGCLQPSDIILSFDGIDI 126
           +GF  LGI  Q  EN  LR+  GMKPD  GV V R+ P +     L+  DI+L FDG+ I
Sbjct: 338 SGFCTLGISCQATENIQLRECFGMKPDLTGVLVSRINPLSDAHRVLKKDDILLEFDGVPI 397

Query: 127 ANDGT 131
           ANDGT
Sbjct: 398 ANDGT 402



>Os05g0417100 Peptidase S1C, HrtA/DegP2/Q/S family protein
          Length = 614

 Score =  129 bits (325), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 82/125 (65%), Gaps = 3/125 (2%)

Query: 7   QIDAAINSGNSGGPAFNDRGKCVGIAFQSLKHEDAENIGYVIPTPVIMHFIQDYEKSGEY 66
           QIDAAIN GNSGGPA     K  G+AFQ+L    AENIGY+IP PVI  FI   E+SG+Y
Sbjct: 277 QIDAAINPGNSGGPAIMG-DKVAGVAFQNLS--GAENIGYIIPVPVIKRFISGVEESGKY 333

Query: 67  TGFPILGIEWQKMENPDLRKAMGMKPDQKGVRVRRVEPTAPESGCLQPSDIILSFDGIDI 126
           +GF  LGI  Q  EN  LR+  GMKPD  GV V R+ P +     L+  DI+L FDG+ I
Sbjct: 334 SGFCTLGISCQATENIQLRECFGMKPDLTGVLVSRINPLSDAHRVLKKDDILLEFDGVPI 393

Query: 127 ANDGT 131
           ANDGT
Sbjct: 394 ANDGT 398



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,582,224
Number of extensions: 237525
Number of successful extensions: 687
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 685
Number of HSP's successfully gapped: 4
Length of query: 139
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 49
Effective length of database: 12,336,541
Effective search space: 604490509
Effective search space used: 604490509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 151 (62.8 bits)