Os04g0459900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase S1C, HrtA/DegP2/Q/S family protein.
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Os04g0459900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase S1C, HrtA/DegP2/Q/S family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.58 | 0.321 | 9.98 | -0.246 | 0.927 | -1.17 | 0.437 | 11.8 | -0.811 | 8.81 | 29.33 | 3885 | -- | -- |
| 49.09 | 0.326 | 10.3 | -2.37 | 0.872 | 0.521 | 0.615 | -- | -1.09 | 8.49 | 34.34 | 18922 | -- | -- |
| 46.97 | 0.319 | 9.97 | -0.18 | 0.924 | -1.12 | -- | 11.3 | -0.762 | 8.8 | 28.95 | 4085 | -- | -- |
| 48.77 | 0.325 | 10.2 | -2.24 | 0.966 | 0.517 | -- | -- | -1.06 | 8.83 | 34.65 | 15763 | -- | -- |
| 94.53 | 0.453 | 9.98 | 0.186 | -- | -1.2 | -- | 11.7 | -0.726 | -- | 28.89 | 2805 | -- | -- |
| 55.02 | 0.348 | 10.2 | -2.08 | 0.946 | -- | 0.392 | -- | -0.911 | 8.7 | -- | -- | -- | -- |
| 55.53 | 0.349 | 10.2 | -2.07 | 0.945 | -- | -- | -- | -0.911 | 8.69 | -- | -- | -- | -- |
| 99.95 | 0.466 | 10.3 | -2.24 | -- | 0.535 | -- | -- | -1.01 | -- | 34.85 | 15779 | -- | -- |
| 114.69 | 0.499 | 10.2 | -- | 0.93 | -0.97 | -- | -- | -0.751 | 8.83 | 35.05 | 47520 | -- | -- |
| 106 | 0.481 | 10.2 | -2.07 | -- | -- | -- | -- | -0.903 | -- | -- | -- | -- | -- |
| 168.34 | 0.607 | 10.2 | -- | 0.94 | -- | -- | -- | -0.68 | 8.85 | -- | -- | -- | -- |
| 163.75 | 0.596 | 10.2 | -- | -- | -0.981 | -- | -- | -0.742 | -- | 35.02 | 47378 | -- | -- |
| 218.68 | 0.69 | 10.2 | -- | -- | -- | -- | -- | -0.674 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.92 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 2 | 45.93 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 3 | 46.08 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 4 | 46.19 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 4 |
| 6 | 46.19 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 20 |
| 21 | 46.25 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 22 | 46.27 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 20 |
| 23 | 46.28 | temperature | 30 | 4320 | < th | dose independent | sin | 7 | NA |
| 24 | 46.28 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 5 |
| 25 | 46.29 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 10 |
| 28 | 46.30 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 7 |
| 33 | 46.30 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 16 |
| 41 | 46.33 | temperature | 30 | 4320 | > th | dose independent | sin | 7 | NA |
| 47 | 46.37 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 53 | 46.44 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 165 | 46.99 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 168 | 47.02 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 4 |
| 170 | 47.03 | temperature | 30 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 173 | 47.04 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 237 | 47.13 | temperature | 30 | 4320 | > th | dose dependent | sin | 2 | NA |
| 259 | 47.15 | temperature | 30 | 4320 | > th | dose dependent | sin | 23 | NA |
| 337 | 47.17 | temperature | 30 | 4320 | > th | dose independent | rect. | 9 | 9 |
| 356 | 47.18 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 454 | 47.18 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 640 | 47.23 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 23 |
| 645 | 47.24 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 646 | 47.24 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 10 |
| 653 | 47.24 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 17 |
| 671 | 47.25 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 672 | 47.25 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 684 | 47.25 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 12 |
| 693 | 47.25 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 14 |
| 755 | 47.25 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 21 |
| 778 | 47.25 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 23 |
| 840 | 47.31 | humidity | 70 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 969 | 47.38 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 972 | 47.39 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 973 | 47.39 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 11 | 21 |