BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0459900 Os04g0459900|AK065850
(445 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0459900 Peptidase S1C, HrtA/DegP2/Q/S family protein 847 0.0
Os05g0568900 Similar to Protease Do-like 1, chloroplast pre... 289 2e-78
Os12g0616600 Peptidase S1C, HrtA/DegP2/Q/S family protein 167 1e-41
Os11g0246600 Peptidase S1C, HrtA/DegP2/Q/S family protein 99 5e-21
>Os04g0459900 Peptidase S1C, HrtA/DegP2/Q/S family protein
Length = 445
Score = 847 bits (2189), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/445 (95%), Positives = 426/445 (95%)
Query: 1 MHCLACXXXXXXXXXXXXXXXXXXXMAIECAASSPFTRDGEETAPRSMMETYGEMSSKPV 60
MHCLAC MAIECAASSPFTRDGEETAPRSMMETYGEMSSKPV
Sbjct: 1 MHCLACAAPAARAPGSRVGGGGRRRMAIECAASSPFTRDGEETAPRSMMETYGEMSSKPV 60
Query: 61 LLASRRKLVALSSFCFCLHSSRYFSALALGDPSVKIDDVTPKIFPSGPLFPTEKRIAELF 120
LLASRRKLVALSSFCFCLHSSRYFSALALGDPSVKIDDVTPKIFPSGPLFPTEKRIAELF
Sbjct: 61 LLASRRKLVALSSFCFCLHSSRYFSALALGDPSVKIDDVTPKIFPSGPLFPTEKRIAELF 120
Query: 121 ETNTYSVVNIFDATLRPQLNVTGVVEIPEGNGSGVVWDDSGHIVTNYHVVGNALSKKPKP 180
ETNTYSVVNIFDATLRPQLNVTGVVEIPEGNGSGVVWDDSGHIVTNYHVVGNALSKKPKP
Sbjct: 121 ETNTYSVVNIFDATLRPQLNVTGVVEIPEGNGSGVVWDDSGHIVTNYHVVGNALSKKPKP 180
Query: 181 GEVVARVNILAADGIQKNFEGKLVGADRSKDLAVLKVDAPTDLLKPINVGQSSALRVGQQ 240
GEVVARVNILAADGIQKNFEGKLVGADRSKDLAVLKVDAPTDLLKPINVGQSSALRVGQQ
Sbjct: 181 GEVVARVNILAADGIQKNFEGKLVGADRSKDLAVLKVDAPTDLLKPINVGQSSALRVGQQ 240
Query: 241 CLAIGNPFGFDHALTVGVISGLNRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGHM 300
CLAIGNPFGFDHALTVGVISGLNRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGHM
Sbjct: 241 CLAIGNPFGFDHALTVGVISGLNRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGHM 300
Query: 301 IGINTAIFTQTGTSAGVGFAIPSSTVLKIAPQLIQFGKVRRAGLNVEFAPDPIAYQLNVR 360
IGINTAIFTQTGTSAGVGFAIPSSTVLKIAPQLIQFGKVRRAGLNVEFAPDPIAYQLNVR
Sbjct: 301 IGINTAIFTQTGTSAGVGFAIPSSTVLKIAPQLIQFGKVRRAGLNVEFAPDPIAYQLNVR 360
Query: 361 TGSLILQVPGGSAAAKAGLVPTSRGFAGNIVLGDVIVAVDGKPIKGKSDLSRVLDDYGVG 420
TGSLILQVPGGSAAAKAGLVPTSRGFAGNIVLGDVIVAVDGKPIKGKSDLSRVLDDYGVG
Sbjct: 361 TGSLILQVPGGSAAAKAGLVPTSRGFAGNIVLGDVIVAVDGKPIKGKSDLSRVLDDYGVG 420
Query: 421 DKVSLTIQRGAETLEVTLPLEEASI 445
DKVSLTIQRGAETLEVTLPLEEASI
Sbjct: 421 DKVSLTIQRGAETLEVTLPLEEASI 445
>Os05g0568900 Similar to Protease Do-like 1, chloroplast precursor (EC 3.4.21.-)
Length = 437
Score = 289 bits (740), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 177/412 (42%), Positives = 241/412 (58%), Gaps = 29/412 (7%)
Query: 31 AASSPFTRDGEETAPRSMMETYGEMSSKPVLLASRRKLVALSSFCFCLHSSRYFSALALG 90
A SP PR + + + + + + A+ +VAL+S L + SA +
Sbjct: 48 ALPSPSASASPWPWPRRLRDLLPDETGRILSSATGSLIVALASAALILGDAGSASAFVVA 107
Query: 91 DPSVKIDDVTPKIFPSGPLFPTEKRIAELFETNTYSVVNIFDATLRPQLNVTGVVEIPEG 150
P L E LF+ NT SVV I + +R V+E+P+G
Sbjct: 108 TPR--------------KLQADELATVRLFQENTPSVVYITNLAVRQDAFTLDVLEVPQG 153
Query: 151 NGSGVVWDDSGHIVTNYHVVGNALSKKPKPGEVVARVNILAADGIQKNFEGKLVGADRSK 210
+GSG VWD SGHIVTN+HV+ A + + + AD Q +E ++VG D+ K
Sbjct: 154 SGSGFVWDKSGHIVTNFHVIRGA-----------SDLRVTLAD--QTVYEAQVVGFDQDK 200
Query: 211 DLAVLKVDAPTDLLKPINVGQSSALRVGQQCLAIGNPFGFDHALTVGVISGLNRDIFSQA 270
D+AVL++ APTD L+P+ VG S+ L VGQ+ AIGNPFG DH LT GVISGL R+I S A
Sbjct: 201 DVAVLRIKAPTDKLRPVPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAA 260
Query: 271 -GVTIGGGIQTDAAINPGNSGGPLLDSKGHMIGINTAIFTQTGTSAGVGFAIPSSTVLKI 329
G I IQTDAAINPGNSGGPLLDS G++IG+NTAI++ +G S+GVGF+IP TV I
Sbjct: 261 TGRPIQDVIQTDAAINPGNSGGPLLDSSGNLIGVNTAIYSPSGASSGVGFSIPVDTVGGI 320
Query: 330 APQLIQFGKVRRAGLNVEFAPDPIAYQLNVRTGSLILQVPGGSAAAKAGLVPTSRGFAGN 389
QLI+FGKV R L ++FAPD QL + +G L+L P A KAGL T R G
Sbjct: 321 VDQLIKFGKVTRPILGIKFAPDQSVEQLGL-SGVLVLDAPPNGPAGKAGLQSTKRDSYGR 379
Query: 390 IVLGDVIVAVDGKPIKGKSDLSRVLDDYGVGDKVSLTIQRGAETLEVTLPLE 441
++LGD+I +V+G + SDL R+LD VG+KV++ + RG + ++ + LE
Sbjct: 380 LILGDIITSVNGTKVTNGSDLYRILDQCKVGEKVTVEVLRGDQKEKIPVILE 431
>Os12g0616600 Peptidase S1C, HrtA/DegP2/Q/S family protein
Length = 160
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/140 (62%), Positives = 103/140 (73%), Gaps = 2/140 (1%)
Query: 200 EGKLVGADRSKDLAVLKVDAPTDLLKPINVGQSSALRVGQQCLAIGNPFGFDHALTVGVI 259
EG+LVG D S DLAVLKVD D L+P +G S LRVGQ C AIGNP+G++H LT GV+
Sbjct: 14 EGRLVGCDPSYDLAVLKVDVDGDKLRPALIGTSKGLRVGQSCFAIGNPYGYEHTLTTGVV 73
Query: 260 SGLNRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGHMIGINTAIFTQTGT--SAGV 317
SGL R+I S G I G IQTDAAIN GNSGGPL+DS GH+IG+NTA FT+ GT S+GV
Sbjct: 74 SGLGREIPSPNGRPIRGAIQTDAAINSGNSGGPLIDSYGHVIGVNTATFTRKGTGISSGV 133
Query: 318 GFAIPSSTVLKIAPQLIQFG 337
FAIP TV++ P LI +G
Sbjct: 134 NFAIPIDTVVQSVPNLIVYG 153
>Os11g0246600 Peptidase S1C, HrtA/DegP2/Q/S family protein
Length = 433
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 143/303 (47%), Gaps = 60/303 (19%)
Query: 152 GSGVVWDDSGHIVTNYHVVGNALSKKPKPGEVVARVNILAADGIQKNFEGKLVGADRSKD 211
GSG + D G I+T HVV + S KP + +V++ DG + FEG ++ ADR D
Sbjct: 176 GSGTIIDPDGTILTCAHVVLDFQSTKPI---LRGKVSVTLQDG--REFEGTVLNADRHSD 230
Query: 212 LAVLKVDAPTDLLKPINVGQSSALRVGQQCLAIGNPFGFDHALTVGVISGLNRDIFSQAG 271
+AV+K+ + T L N+G SS LR G +A+G P + +T G+
Sbjct: 231 IAVVKIKSKTPL-PSANLGSSSKLRPGDWVVALGCPLSLQNTVTAGI------------- 276
Query: 272 VTIGGGIQTDAAINPGNSGGPLLDSKGHMIGINTAIFTQTGTSAGVGFAIPSSTVLKIAP 331
GNSGGPL++ G ++G+N + + G+ FA+P +++KI
Sbjct: 277 ---------------GNSGGPLVNLDGEIVGVNV---MKVWAADGLSFAVPIDSIVKIVE 318
Query: 332 QLIQFGKVRRAGLNVEFAP-DP-IAYQL--------NVRTGSLILQVPGGSAAAKAGLVP 381
+ G+V R L ++ +P I QL +V+ G L+ V GS A AG P
Sbjct: 319 NFKKNGRVVRPWLGLKMLDLNPMIIAQLKERSSSFPDVKNGVLVPMVTPGSPAEHAGFRP 378
Query: 382 TSRGFAGNIVLGDVIVAVDGKPIKGKSDLSRVLDDYGVGDKVSLTIQRGAE-TLEVTLPL 440
GDV+V DGK ++ ++ ++ D VG + ++R T+ +T+
Sbjct: 379 -----------GDVVVEFDGKLVESIKEIIDIMGDK-VGVPFKVLVKRANNVTVSLTVIP 426
Query: 441 EEA 443
EEA
Sbjct: 427 EEA 429
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,792,522
Number of extensions: 658951
Number of successful extensions: 1460
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1451
Number of HSP's successfully gapped: 4
Length of query: 445
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 341
Effective length of database: 11,605,545
Effective search space: 3957490845
Effective search space used: 3957490845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)