Os01g0278600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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Os01g0278600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.87 | 0.293 | 8.23 | -0.0407 | 0.677 | -0.192 | 0.41 | 5.56 | -0.384 | 7.2 | 30.42 | 1283 | -- | -- |
| 40.44 | 0.296 | 8.33 | -0.973 | 0.711 | 0.449 | 0.427 | -- | -0.356 | 6.95 | 29.7 | 1458 | -- | -- |
| 39.32 | 0.292 | 8.23 | -0.0179 | 0.677 | -0.201 | -- | 5.65 | -0.385 | 7.21 | 30.5 | 1286 | -- | -- |
| 40.5 | 0.296 | 8.35 | -1 | 0.685 | 0.447 | -- | -- | -0.436 | 7.18 | 28.15 | 1357 | -- | -- |
| 63.41 | 0.371 | 8.24 | 0.0276 | -- | -0.194 | -- | 5.69 | -0.366 | -- | 30.12 | 1361 | -- | -- |
| 49.57 | 0.33 | 8.36 | -0.873 | 0.699 | -- | 0.479 | -- | -0.47 | 6.84 | -- | -- | -- | -- |
| 50.16 | 0.332 | 8.36 | -0.864 | 0.7 | -- | -- | -- | -0.471 | 6.87 | -- | -- | -- | -- |
| 65.28 | 0.376 | 8.38 | -1 | -- | 0.471 | -- | -- | -0.471 | -- | 27.03 | 1383 | -- | -- |
| 65.09 | 0.376 | 8.32 | -- | 0.683 | 0.305 | -- | -- | -0.308 | 7.2 | 31.09 | 1282 | -- | -- |
| 75.82 | 0.407 | 8.37 | -0.849 | -- | -- | -- | -- | -0.458 | -- | -- | -- | -- | -- |
| 69.83 | 0.391 | 8.34 | -- | 0.69 | -- | -- | -- | -0.375 | 6.95 | -- | -- | -- | -- |
| 89.69 | 0.441 | 8.34 | -- | -- | 0.309 | -- | -- | -0.293 | -- | 30.6 | 1357 | -- | -- |
| 94.84 | 0.455 | 8.35 | -- | -- | -- | -- | -- | -0.364 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.92 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 2 | 38.96 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 3 | 39.00 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 4 | 39.01 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 18 | 39.02 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 20 | 39.04 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 36 | 39.07 | temperature | 30 | 1440 | > th | dose dependent | sin | 16 | NA |
| 56 | 39.08 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 58 | 39.09 | wind | 5 | 43200 | < th | dose independent | sin | 4 | NA |
| 79 | 39.11 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 87 | 39.13 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 88 | 39.13 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 91 | 39.14 | wind | 5 | 43200 | > th | dose independent | sin | 3 | NA |
| 111 | 39.15 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 20 |
| 112 | 39.15 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 200 | 39.15 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 212 | 39.17 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 239 | 39.21 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 249 | 39.24 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 262 | 39.24 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 288 | 39.27 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 297 | 39.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 319 | 39.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 326 | 39.30 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 4 |
| 330 | 39.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 341 | 39.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 365 | 39.34 | wind | 3 | 43200 | > th | dose dependent | rect. | 19 | 18 |
| 367 | 39.35 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 371 | 39.36 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 376 | 39.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 384 | 39.38 | wind | 3 | 43200 | > th | dose dependent | rect. | 7 | 7 |
| 385 | 39.38 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 9 |
| 387 | 39.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 391 | 39.39 | wind | 3 | 43200 | > th | dose dependent | rect. | 19 | 15 |
| 399 | 39.41 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 408 | 39.42 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 437 | 39.44 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 18 |
| 491 | 39.54 | wind | 3 | 43200 | > th | dose dependent | sin | 5 | NA |
| 528 | 39.57 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 600 | 39.65 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 615 | 39.68 | temperature | 30 | 1440 | < th | dose independent | sin | 10 | NA |
| 616 | 39.68 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 622 | 39.68 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 624 | 39.69 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 630 | 39.70 | temperature | 30 | 1440 | > th | dose independent | sin | 10 | NA |
| 631 | 39.70 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 638 | 39.70 | humidity | 80 | 1440 | < th | dose dependent | rect. | 12 | 21 |
| 640 | 39.71 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 648 | 39.73 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 670 | 39.76 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 679 | 39.77 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 680 | 39.77 | wind | 3 | 43200 | > th | dose dependent | sin | 10 | NA |
| 693 | 39.78 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 711 | 39.82 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 736 | 39.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 6 |
| 778 | 39.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 785 | 39.87 | humidity | 80 | 1440 | < th | dose dependent | rect. | 12 | 15 |
| 786 | 39.87 | humidity | 80 | 1440 | < th | dose dependent | rect. | 12 | 17 |
| 795 | 39.88 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 813 | 39.88 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 820 | 39.88 | humidity | 80 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 825 | 39.88 | humidity | 80 | 1440 | < th | dose dependent | rect. | 12 | 12 |
| 856 | 39.91 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 876 | 39.92 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 9 |
| 885 | 39.93 | humidity | 80 | 1440 | < th | dose dependent | sin | 16 | NA |
| 930 | 39.96 | humidity | 70 | 1440 | < th | dose independent | sin | 16 | NA |
| 931 | 39.96 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 994 | 40.01 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |