BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0245800 Os11g0245800|AK105722
(324 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0245800 Hypothetical protein 599 e-172
Os01g0781200 Similar to Rust resistance protein 231 5e-61
Os01g0782100 Similar to NBS-LRR protein (Fragment) 228 4e-60
Os01g0781100 Similar to NBS-LRR protein (Fragment) 205 4e-53
Os02g0137900 135 3e-32
>Os11g0245800 Hypothetical protein
Length = 324
Score = 599 bits (1545), Expect = e-172, Method: Compositional matrix adjust.
Identities = 295/324 (91%), Positives = 295/324 (91%)
Query: 1 ERIMNLTSFPSPQVLQRLTMLKRLYIRSCWCLRSLGGLREATSLSEVKIDSCISLELVDE 60
ERIMNLTSFPSPQVLQRLTMLKRLYIRSCWCLRSLGGLREATSLSEVKIDSCISLELVDE
Sbjct: 1 ERIMNLTSFPSPQVLQRLTMLKRLYIRSCWCLRSLGGLREATSLSEVKIDSCISLELVDE 60
Query: 61 NGIAVMPSSIGKLSLFGCILGANFLSTDFPRLXXXXXXXXXXXXXFAIGHLRSLESLSLN 120
NGIAVMPSSIGKLSLFGCILGANFLSTDFPRL FAIGHLRSLESLSLN
Sbjct: 61 NGIAVMPSSIGKLSLFGCILGANFLSTDFPRLRSISITCCRSSSSFAIGHLRSLESLSLN 120
Query: 121 NMPDLCFLEGLSCPHLQDIHLINVPNLTAESFSRHHAWKXXXXXXXXXXXXXXXXKDFML 180
NMPDLCFLEGLSCPHLQDIHLINVPNLTAESFSRHHAWK KDFML
Sbjct: 121 NMPDLCFLEGLSCPHLQDIHLINVPNLTAESFSRHHAWKSLAISSSAMLSLMLSIKDFML 180
Query: 181 PEKLCFEQYDEPSITFQSSANFTSIKFLEFRDSKVMYLPSSLKNLSSLERIKFVRIPNLS 240
PEKLCFEQYDEPSITFQSSANFTSIKFLEFRDSKVMYLPSSLKNLSSLERIKFVRIPNLS
Sbjct: 181 PEKLCFEQYDEPSITFQSSANFTSIKFLEFRDSKVMYLPSSLKNLSSLERIKFVRIPNLS 240
Query: 241 SLPDFPNSIQQIEIQDCECLKRSCQAPNGENWQKIECIRWKLIEVSKPDESIAWFIHRYD 300
SLPDFPNSIQQIEIQDCECLKRSCQAPNGENWQKIECIRWKLIEVSKPDESIAWFIHRYD
Sbjct: 241 SLPDFPNSIQQIEIQDCECLKRSCQAPNGENWQKIECIRWKLIEVSKPDESIAWFIHRYD 300
Query: 301 KVGIAAYPKKLQPGQPVVWHDKNH 324
KVGIAAYPKKLQPGQPVVWHDKNH
Sbjct: 301 KVGIAAYPKKLQPGQPVVWHDKNH 324
>Os01g0781200 Similar to Rust resistance protein
Length = 1288
Score = 231 bits (590), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 126/279 (45%), Positives = 165/279 (59%), Gaps = 2/279 (0%)
Query: 3 IMNLTSFPSPQVLQRLTMLKRLYIRSCWCLRSLGGLREATSLSEVKIDSCISLELVDENG 62
IM LT+ P +VLQ L L+ L IRSCWCLRS GGLR ATSLSE+++ SC SL+L G
Sbjct: 1009 IMTLTTLPPEEVLQHLGNLRYLVIRSCWCLRSFGGLRSATSLSEIRLFSCPSLQLA--RG 1066
Query: 63 IAVMPSSIGKLSLFGCILGANFLSTDFPRLXXXXXXXXXXXXXFAIGHLRSLESLSLNNM 122
M S+ KL ++ C+L A+F D+P L +G L SLES SL +
Sbjct: 1067 AEFMQMSLEKLCVYNCVLSADFFCGDWPHLDDILLSGCRSSSSLHVGDLTSLESFSLYHF 1126
Query: 123 PDLCFLEGLSCPHLQDIHLINVPNLTAESFSRHHAWKXXXXXXXXXXXXXXXXKDFMLPE 182
PDLC LEGLS L +HLI+VP LT ES S+ + + F++PE
Sbjct: 1127 PDLCTLEGLSSLQLHHVHLIDVPKLTTESISQFRVQRSLYISSSVMLNHMLSAEGFVVPE 1186
Query: 183 KLCFEQYDEPSITFQSSANFTSIKFLEFRDSKVMYLPSSLKNLSSLERIKFVRIPNLSSL 242
L E EPS++F+ SANFTS+K L + ++ P ++K LSSL ++ PN+SS+
Sbjct: 1187 FLSLESCKEPSVSFEESANFTSVKCLRLCNCEMRSPPGNMKCLSSLTKLDIYDCPNISSI 1246
Query: 243 PDFPNSIQQIEIQDCECLKRSCQAPNGENWQKIECIRWK 281
PD P+S+Q I I CE LK SC+AP GE+W KI IRWK
Sbjct: 1247 PDLPSSLQHICIWGCELLKESCRAPEGESWPKIAHIRWK 1285
>Os01g0782100 Similar to NBS-LRR protein (Fragment)
Length = 1290
Score = 228 bits (581), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 123/279 (44%), Positives = 166/279 (59%), Gaps = 2/279 (0%)
Query: 3 IMNLTSFPSPQVLQRLTMLKRLYIRSCWCLRSLGGLREATSLSEVKIDSCISLELVDENG 62
IM LT+ P +V Q L L+ L IRSCWCLRS GGLR ATSLSE+++ SC SL+L G
Sbjct: 1011 IMTLTTLPPEEVFQHLGNLRYLVIRSCWCLRSFGGLRSATSLSEIRLFSCPSLQLA--RG 1068
Query: 63 IAVMPSSIGKLSLFGCILGANFLSTDFPRLXXXXXXXXXXXXXFAIGHLRSLESLSLNNM 122
M S+ KL ++ C+L A+F D+P L +G L SL+S SL ++
Sbjct: 1069 AEFMQMSLEKLCVYNCVLSADFFCGDWPHLNNIGLCGCRSSASLYVGDLTSLKSFSLYHL 1128
Query: 123 PDLCFLEGLSCPHLQDIHLINVPNLTAESFSRHHAWKXXXXXXXXXXXXXXXXKDFMLPE 182
PDLC LEGLS L +HLI+VP LT ES S+ + + F +P
Sbjct: 1129 PDLCVLEGLSYLQLHHVHLIDVPKLTTESISQFRVQRSLYISSSVMLNHMISAEGFKVPG 1188
Query: 183 KLCFEQYDEPSITFQSSANFTSIKFLEFRDSKVMYLPSSLKNLSSLERIKFVRIPNLSSL 242
L E +PS++F+ SANFTS+K L + ++ LP ++K LSSL ++ PN++SL
Sbjct: 1189 FLSLESCKKPSVSFEESANFTSVKCLRLCNCEMRSLPGNMKCLSSLTKLDIYDCPNITSL 1248
Query: 243 PDFPNSIQQIEIQDCECLKRSCQAPNGENWQKIECIRWK 281
PD P+S+Q I I CE LK+SC+AP+GE+W KI IRWK
Sbjct: 1249 PDLPSSLQHICIWGCELLKKSCRAPDGESWPKIAHIRWK 1287
>Os01g0781100 Similar to NBS-LRR protein (Fragment)
Length = 1273
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/273 (41%), Positives = 163/273 (59%), Gaps = 3/273 (1%)
Query: 3 IMNLTSFPSPQVLQRLTMLKRLYIRSCWCLRSLGGLREATSLSEVKIDSCISLELVDENG 62
IM LT+ PS +VLQ L L L IRSCWC+RSLGGLR A S+ E+++ SC SLEL G
Sbjct: 974 IMTLTTLPSEEVLQHLANLNFLAIRSCWCIRSLGGLR-AVSIKEMRLFSCPSLELA--CG 1030
Query: 63 IAVMPSSIGKLSLFGCILGANFLSTDFPRLXXXXXXXXXXXXXFAIGHLRSLESLSLNNM 122
+P S+ +L ++ C++GA+F D+P++ +G L SLE +L ++
Sbjct: 1031 AEFIPLSLRRLCIYRCVVGADFFCGDWPQMREILLCQCRSSASLHVGGLTSLELFALYHL 1090
Query: 123 PDLCFLEGLSCPHLQDIHLINVPNLTAESFSRHHAWKXXXXXXXXXXXXXXXXKDFMLPE 182
PDLC LE S P L +HLINVP LTA+ S+ + F+LP
Sbjct: 1091 PDLCVLEVSSSPRLHQVHLINVPKLTAKCISQFRVQHSLHISSSLILNYMLSAEAFVLPA 1150
Query: 183 KLCFEQYDEPSITFQSSANFTSIKFLEFRDSKVMYLPSSLKNLSSLERIKFVRIPNLSSL 242
L E+ +PSI+F+ SA FTS+++L ++ L ++K LSSL+++ PN+SSL
Sbjct: 1151 YLSLERCKDPSISFEESAIFTSVEWLRLSKCEMRSLQGNMKCLSSLKKLDIYDCPNISSL 1210
Query: 243 PDFPNSIQQIEIQDCECLKRSCQAPNGENWQKI 275
PD P+S+Q I I +C+ L+ SC+AP+GE+W KI
Sbjct: 1211 PDLPSSLQHICIWNCKLLEESCRAPDGESWPKI 1243
>Os02g0137900
Length = 1466
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 143/278 (51%), Gaps = 7/278 (2%)
Query: 3 IMNLTSFPSPQVLQRLTMLKRLYIRSCWCLRSLGGLREATSLSEVKIDSCISLELVDENG 62
I L++ PS QV++ L+ML + I SC L S+ GL SL + I C SLEL D
Sbjct: 1094 ITTLSALPSKQVMENLSMLSSVGITSCRSLCSVAGLGAIASLEKFAISFCPSLELSDRR- 1152
Query: 63 IAVMPSSIGKLSLFGCILGANFLSTDFPRLXXXXXXXXXXXXXFAIGHLRSLESLSLNNM 122
++PS + ++++ GC + FL D P L +G SL+ L L +
Sbjct: 1153 --ILPSQLKEVTVRGCTIHDGFLHDDLPFLVNLEISKCRTPSVLQVGAWPSLKCLKLCDC 1210
Query: 123 PDLCFLEGL-SCPHLQDIHLINVPNLTAESFSRHHA-WKXXXXXXXXXXXXXXXXKDFML 180
D+CFL GL + LQ++ L+ +PNL A+SF+ W+ + F
Sbjct: 1211 LDVCFLVGLPALESLQEVQLV-LPNLGADSFTGCKGNWRSLRVRTSSLLHDLSELEGFAP 1269
Query: 181 PEKLCFEQYDEPSITFQSSANFTSIKFLEFRDSKVMYLPSSLKNLSSLERIKFVRIPNLS 240
P L E EP + + N +SI L F + KV + S++K+L+SLE + F P L
Sbjct: 1270 PMLLTIEGCQEPDFSLEGIQNLSSIIGLSFMNCKVQSI-SAMKDLASLETLAFFDCPLLI 1328
Query: 241 SLPDFPNSIQQIEIQDCECLKRSCQAPNGENWQKIECI 278
SLP+ P S+Q ++I C+ L++SC++ GE+ +KI I
Sbjct: 1329 SLPELPPSVQYLDIIGCQILEKSCRSRRGEDRRKISQI 1366
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,983,322
Number of extensions: 364376
Number of successful extensions: 1558
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1551
Number of HSP's successfully gapped: 5
Length of query: 324
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 223
Effective length of database: 11,762,187
Effective search space: 2622967701
Effective search space used: 2622967701
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)