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Os01g0782100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NBS-LRR protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.14 (0.0268) R2 : 0.733
β1 : 3.44 (0.101) R2dD : 0.761 R2D : 0.408
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.3 (0.098) R2dE : 0.12 R2E : -0.159
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.08 (0.0595) R2dN8 : 0.288 R2N8 : -0.0165
σ : 0.496
deviance : 113.31
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 19.95
memory length : 836
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
105.33 0.482 8.07 3.95 0.234 -1.33 0.669 2.53 1.22 12.5 20.87 790 -- --
110 0.488 8.12 3.45 0.274 -1.2 0.195 -- 1.11 11.1 18.56 841 -- --
106.91 0.482 8.08 3.88 0.232 -1.27 -- 2.14 1.18 11.1 21.56 840 -- --
109.73 0.488 8.13 3.4 0.259 -1.15 -- -- 1.06 10.7 20.06 845 -- --
109.73 0.488 8.07 3.96 -- -1.42 -- 2.38 1.22 -- 21.8 842 -- --
137.79 0.55 8.17 3.05 0.563 -- 0.263 -- 0.841 10.2 -- -- -- --
138.05 0.55 8.17 3.06 0.563 -- -- -- 0.841 10.1 -- -- -- --
113.31 0.496 8.14 3.44 -- -1.3 -- -- 1.08 -- 19.95 836 -- --
383.58 0.912 8.25 -- 0.54 -0.186 -- -- 0.482 9.31 28.67 1313 -- --
157.18 0.586 8.19 3.06 -- -- -- -- 0.841 -- -- -- -- --
385.36 0.918 8.25 -- 0.553 -- -- -- 0.5 9.67 -- -- -- --
395.88 0.927 8.27 -- -- -0.51 -- -- 0.487 -- 27.09 791 -- --
403.51 0.938 8.27 -- -- -- -- -- 0.502 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 99.77 wind 9.0 43200 > th dose dependent rect. 20 1
2 100.21 wind 9.0 43200 > th dose dependent rect. 17 11
8 100.40 wind 9.0 43200 > th dose dependent rect. 17 8
9 100.43 wind 7.0 43200 > th dose independent rect. 20 1
16 101.02 wind 7.0 43200 < th dose independent rect. 20 1
27 101.79 wind 9.0 43200 > th dose independent rect. 18 10
28 101.96 wind 9.0 43200 > th dose independent rect. 18 6
39 102.39 wind 9.0 43200 > th dose dependent rect. 20 5
40 102.40 wind 9.0 43200 < th dose independent rect. 18 10
42 102.46 wind 9.0 43200 < th dose independent rect. 18 4
43 102.49 wind 9.0 43200 > th dose independent rect. 18 4
44 102.50 wind 9.0 43200 > th dose dependent rect. 20 8
52 102.60 wind 9.0 43200 < th dose independent rect. 18 6
56 102.71 wind 9.0 43200 > th dose dependent sin 13 NA
58 102.74 precipitation 0.1 43200 > th dose dependent rect. 17 1
59 102.75 radiation 1.0 43200 < th dose dependent rect. 19 8
62 102.82 radiation 1.0 43200 < th dose dependent rect. 19 6
71 103.03 wind 9.0 43200 > th dose independent rect. 17 14
72 103.04 precipitation 0.1 43200 > th dose independent rect. 17 1
81 103.25 precipitation 0.1 43200 < th dose independent rect. 17 1
82 103.25 precipitation 0.1 43200 < th dose dependent rect. 17 1
101 103.83 wind 5.0 43200 > th dose dependent rect. 14 19
103 103.87 temperature 20.0 1440 > th dose dependent rect. 17 1
111 104.08 atmosphere 995.0 43200 < th dose dependent rect. 15 1
116 104.23 temperature 30.0 90 < th dose dependent rect. 11 23
122 104.35 temperature 30.0 90 < th dose dependent rect. 13 22
128 104.48 wind 5.0 43200 > th dose independent rect. 14 19
131 104.51 temperature 20.0 270 > th dose dependent rect. 15 22
134 104.56 wind 5.0 43200 < th dose independent rect. 14 19
138 104.60 atmosphere 995.0 43200 < th dose independent rect. 14 1
140 104.62 wind 9.0 43200 > th dose independent sin 12 NA
166 104.81 wind 5.0 43200 < th dose independent rect. 15 17
167 104.81 temperature 20.0 720 > th dose dependent rect. 7 22
173 104.87 temperature 30.0 270 < th dose dependent rect. 11 21
186 104.99 wind 5.0 43200 > th dose independent rect. 4 17
203 105.09 wind 5.0 43200 < th dose independent rect. 4 17
215 105.13 temperature 30.0 1440 < th dose dependent rect. 17 2
243 105.24 wind 5.0 43200 > th dose dependent rect. 6 15
281 105.35 temperature 10.0 90 > th dose dependent rect. 6 23
315 105.42 wind 5.0 43200 > th dose dependent sin 14 NA
335 105.46 temperature 10.0 720 > th dose dependent rect. 7 21
347 105.49 wind 5.0 43200 > th dose dependent rect. 15 12
349 105.50 wind 9.0 43200 < th dose independent sin 12 NA
362 105.51 temperature 20.0 720 > th dose dependent rect. 23 23
380 105.55 atmosphere 995.0 43200 > th dose independent rect. 12 4
387 105.56 wind 5.0 43200 > th dose independent sin 15 NA
405 105.58 temperature 20.0 720 > th dose dependent rect. 21 23
460 105.68 atmosphere 995.0 43200 > th dose independent rect. 14 1
501 105.74 wind 5.0 43200 < th dose independent sin 14 NA
579 105.86 temperature 20.0 720 > th dose dependent no NA NA
588 105.88 wind 9.0 43200 < th dose dependent rect. 20 1
623 105.92 wind 5.0 43200 < th dose independent no NA NA
624 105.92 atmosphere 995.0 43200 > th dose independent rect. 12 1
677 105.98 temperature 20.0 720 > th dose dependent rect. 10 23
718 106.05 wind 5.0 43200 > th dose independent no NA NA
736 106.07 temperature 20.0 720 > th dose dependent rect. 3 23
746 106.10 atmosphere 1000.0 43200 < th dose dependent rect. 4 1
750 106.11 wind 5.0 43200 > th dose independent sin 23 NA
756 106.11 wind 3.0 43200 > th dose dependent no NA NA
813 106.19 wind 3.0 43200 > th dose dependent rect. 20 23
827 106.23 temperature 25.0 1440 > th dose independent rect. 19 1
841 106.25 wind 5.0 43200 < th dose independent sin 23 NA
867 106.29 wind 3.0 43200 > th dose dependent sin 0 NA
869 106.29 radiation 1.0 43200 < th dose dependent rect. 1 1
991 106.50 wind 3.0 43200 > th dose dependent rect. 17 23
1000 106.53 wind 9.0 43200 > th dose dependent sin 17 NA