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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0781200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Rust resistance protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.24 (0.0325) R2 : 0.571
β1 : 2.45 (0.119) R2dD : 0.413 R2D : 0.335
β2 : 1.06 (0.0771) R2dC : 0.178 R2C : 0.152
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.463 (0.0694) R2dN8 : 0.0562 R2N8 : -0.0102
σ : 0.612
deviance : 170.6
__
_____
C
peak time of C : 12.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
154.08 0.583 5.2 2.6 1.08 0.837 0.505 2.2 0.421 12.3 20.5 1419 -- --
162.74 0.599 5.26 2.33 0.965 0.407 0.391 -- 0.383 12.2 20.5 1419 -- --
154.32 0.579 5.21 2.73 1.03 0.716 -- 2.17 0.434 12.2 21.02 1497 -- --
163.22 0.595 5.27 2.24 1.1 0.521 -- -- 0.329 12.2 20.91 1186 -- --
211.79 0.682 5.28 2.44 -- 0.704 -- 0.84 0.341 -- 21 1607 -- --
169.83 0.611 5.24 2.43 1.06 -- 0.422 -- 0.462 12.3 -- -- -- --
170.6 0.612 5.24 2.45 1.06 -- -- -- 0.463 12.2 -- -- -- --
215.82 0.687 5.29 2.26 -- 0.694 -- -- 0.301 -- 20.9 1610 -- --
205.79 0.668 5.39 -- 1.08 1.76 -- -- -0.23 12.2 18.5 47520 -- --
241 0.725 5.26 2.42 -- -- -- -- 0.447 -- -- -- -- --
328.86 0.848 5.3 -- 1.02 -- -- -- 0.19 12.1 -- -- -- --
278.92 0.778 5.41 -- -- 1.71 -- -- -0.23 -- 18.42 47520 -- --
394.96 0.928 5.32 -- -- -- -- -- 0.179 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 149.54 wind 3.0 43200 < th dose dependent rect. 22 8
2 149.70 wind 9.0 14400 < th dose independent rect. 10 1
7 150.39 wind 9.0 14400 > th dose independent rect. 10 1
10 150.63 wind 5.0 43200 < th dose dependent rect. 1 1
15 150.95 wind 3.0 43200 < th dose dependent rect. 23 5
18 151.22 precipitation 0.1 14400 > th dose dependent rect. 17 1
21 151.37 wind 9.0 14400 < th dose independent rect. 8 3
27 151.92 wind 3.0 14400 < th dose independent rect. 1 1
28 151.97 precipitation 0.1 14400 > th dose independent rect. 17 1
37 152.41 precipitation 0.1 14400 > th dose dependent rect. 19 1
42 152.54 humidity 80.0 14400 > th dose dependent rect. 13 1
46 152.64 precipitation 0.1 14400 < th dose independent rect. 17 1
47 152.64 precipitation 0.1 14400 < th dose dependent rect. 17 1
49 152.70 precipitation 0.1 14400 > th dose independent rect. 19 1
50 152.72 wind 3.0 14400 > th dose independent rect. 1 1
51 152.74 precipitation 0.1 14400 < th dose independent rect. 19 1
53 152.74 precipitation 0.1 14400 < th dose dependent rect. 19 1
57 152.85 wind 3.0 14400 < th dose independent rect. 22 6
62 152.95 wind 3.0 14400 < th dose independent rect. 22 8
69 153.11 wind 1.0 43200 > th dose dependent rect. 24 2
72 153.21 wind 3.0 43200 < th dose dependent sin 9 NA
89 153.47 wind 3.0 14400 > th dose independent rect. 24 3
95 153.55 precipitation 0.1 14400 < th dose independent rect. 15 1
96 153.55 precipitation 0.1 14400 < th dose dependent rect. 15 1
99 153.56 precipitation 0.1 14400 > th dose independent rect. 15 1
100 153.56 precipitation 0.1 14400 > th dose dependent rect. 15 1
105 153.60 wind 3.0 14400 > th dose independent rect. 22 8
112 153.65 wind 3.0 43200 < th dose dependent rect. 5 2
118 153.71 humidity 80.0 14400 > th dose independent rect. 13 1
122 153.76 wind 3.0 14400 < th dose independent rect. 22 11
126 153.78 wind 3.0 43200 < th dose dependent rect. 22 15
150 154.00 precipitation 0.1 14400 > th dose independent rect. 13 4
156 154.04 temperature 10.0 10 > th dose dependent rect. 3 23
157 154.06 wind 3.0 14400 > th dose independent rect. 24 7
159 154.08 precipitation 0.1 14400 < th dose independent rect. 13 4
161 154.08 precipitation 0.1 14400 < th dose dependent rect. 13 4
163 154.09 humidity 80.0 14400 > th dose independent rect. 13 3
168 154.11 precipitation 0.1 14400 > th dose dependent rect. 13 4
169 154.12 temperature 20.0 1440 > th dose independent rect. 18 12
185 154.26 wind 3.0 14400 > th dose independent rect. 22 11
186 154.26 humidity 80.0 1440 > th dose independent rect. 21 15
221 154.40 precipitation 0.1 4320 > th dose independent rect. 23 18
235 154.44 humidity 80.0 1440 < th dose independent rect. 21 15
236 154.44 precipitation 0.1 4320 < th dose independent rect. 23 18
239 154.44 precipitation 0.1 4320 < th dose dependent rect. 23 18
246 154.47 temperature 20.0 1440 < th dose independent rect. 18 12
251 154.48 precipitation 0.1 4320 < th dose independent rect. 1 16
253 154.48 precipitation 0.1 4320 < th dose dependent rect. 1 16
262 154.51 precipitation 0.1 4320 > th dose dependent rect. 1 5
273 154.54 precipitation 0.1 4320 > th dose dependent rect. 23 18
281 154.58 temperature 20.0 1440 > th dose independent sin 13 NA
286 154.58 wind 3.0 14400 < th dose independent rect. 22 15
319 154.68 wind 3.0 14400 < th dose independent rect. 19 12
322 154.68 temperature 20.0 10 > th dose dependent rect. 6 20
367 154.81 humidity 80.0 1440 < th dose independent rect. 2 10
400 154.86 precipitation 0.1 4320 > th dose independent rect. 1 5
402 154.86 humidity 80.0 1440 > th dose independent rect. 1 11
412 154.89 precipitation 0.1 4320 < th dose independent rect. 1 5
414 154.89 precipitation 0.1 4320 < th dose dependent rect. 1 5
421 154.90 wind 7.0 14400 > th dose dependent rect. 10 1
422 154.90 temperature 20.0 1440 > th dose dependent rect. 24 3
425 154.91 humidity 80.0 1440 > th dose independent rect. 23 13
444 154.93 temperature 20.0 1440 > th dose dependent rect. 24 1
455 154.94 temperature 25.0 90 < th dose dependent rect. 3 20
483 154.99 temperature 20.0 1440 < th dose independent sin 13 NA
484 154.99 humidity 80.0 1440 < th dose independent rect. 21 18
490 155.00 wind 3.0 14400 < th dose independent sin 9 NA
506 155.02 precipitation 0.1 4320 < th dose independent rect. 1 7
512 155.02 precipitation 0.1 4320 < th dose dependent rect. 1 7
524 155.03 temperature 20.0 10 > th dose dependent rect. 6 22
530 155.04 humidity 80.0 1440 > th dose independent rect. 21 19
533 155.04 temperature 20.0 1440 > th dose independent rect. 1 23
555 155.07 temperature 30.0 10 < th dose dependent rect. 2 22
557 155.08 humidity 80.0 1440 < th dose independent rect. 23 16
571 155.10 wind 3.0 14400 < th dose independent rect. 19 14
574 155.10 temperature 20.0 1440 > th dose independent rect. 3 23
593 155.13 temperature 20.0 1440 > th dose independent no NA NA
595 155.13 humidity 80.0 1440 < th dose independent rect. 1 14
602 155.14 precipitation 0.1 4320 > th dose independent rect. 1 7
612 155.15 wind 3.0 14400 > th dose independent rect. 22 15
627 155.17 humidity 80.0 1440 < th dose independent sin 5 NA
631 155.17 temperature 20.0 1440 > th dose independent rect. 5 23
662 155.21 humidity 80.0 1440 > th dose independent rect. 23 17
690 155.26 wind 3.0 14400 > th dose independent rect. 5 1
697 155.27 humidity 80.0 1440 > th dose independent sin 5 NA
729 155.31 humidity 80.0 1440 > th dose independent rect. 1 15
735 155.31 wind 1.0 14400 > th dose dependent rect. 23 5
743 155.32 humidity 90.0 1440 < th dose dependent rect. 23 11
754 155.34 wind 3.0 14400 < th dose independent rect. 5 1
841 155.43 temperature 20.0 1440 < th dose independent rect. 1 23
881 155.47 precipitation 0.1 14400 > th dose dependent rect. 7 10
910 155.51 temperature 20.0 1440 < th dose independent no NA NA
960 155.58 humidity 70.0 1440 > th dose dependent rect. 2 13
981 155.61 wind 3.0 14400 > th dose independent sin 8 NA