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Os01g0781100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NBS-LRR protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.39 (0.0237) R2 : 0.65
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.965 (0.0572) R2dC : 0.219 R2C : 0.219
β3 : -1.97 (0.0846) R2dE : 0.42 R2E : 0.426
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.136 (0.0499) R2dN8 : 0.00745 R2N8 : 0.00854
σ : 0.445
deviance : 91.2
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C
peak time of C : 10.4
E
wheather : temperature
threshold : 10.38
memory length : 36
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.68
open length of G : 20.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.57 0.447 6.38 0.0937 0.96 -2 0.24 0.513 -0.12 10.4 9.974 37 7.67 21
90.78 0.444 6.39 0.0636 0.965 -2.01 0.316 -- -0.133 10.4 10.21 36 7.67 20.9
90.72 0.444 6.38 0.105 0.968 -1.98 -- 0.563 -0.117 10.4 10.43 35 7.67 20.9
91.08 0.444 6.39 0.0712 0.969 -1.99 -- -- -0.126 10.4 10.59 36 7.68 20.9
114.72 0.499 6.44 0.194 -- -2.2 -- 0.293 -0.0977 -- 5.722 246 8.5 18.3
151.26 0.577 6.4 -0.228 1.4 -- 0.175 -- -0.226 7.54 -- -- -- --
151.34 0.576 6.4 -0.224 1.4 -- -- -- -0.226 7.53 -- -- -- --
111.39 0.492 6.43 -0.0195 -- -2.12 -- -- -0.197 -- 1.197 275 8.22 18.1
91.2 0.445 6.39 -- 0.965 -1.97 -- -- -0.136 10.4 10.38 36 7.68 20.9
256.97 0.749 6.43 -0.203 -- -- -- -- -0.204 -- -- -- -- --
152.67 0.578 6.39 -- 1.4 -- -- -- -0.201 7.55 -- -- -- --
111.25 0.491 6.43 -- -- -2.06 -- -- -0.197 -- 0.3464 271 8.27 18
258.06 0.75 6.43 -- -- -- -- -- -0.182 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 92.70 temperature 10.0 90 > th dose dependent rect. 7 21
2 93.77 temperature 30.0 90 < th dose dependent rect. 13 20
3 94.52 temperature 30.0 270 < th dose dependent rect. 13 18
5 95.26 temperature 30.0 90 < th dose dependent rect. 15 18
15 97.21 temperature 10.0 270 > th dose dependent rect. 18 9
26 98.47 temperature 10.0 10 > th dose dependent rect. 7 22
29 98.90 temperature 15.0 10 > th dose dependent rect. 8 20
126 104.16 temperature 20.0 90 > th dose independent rect. 8 20
142 105.04 radiation 30.0 10 < th dose dependent rect. 3 23
174 107.27 radiation 20.0 10 < th dose independent rect. 3 23
182 107.62 radiation 1.0 270 < th dose independent rect. 3 15
215 108.59 temperature 25.0 270 < th dose independent rect. 12 19
233 109.27 radiation 20.0 90 < th dose dependent rect. 4 13
251 109.76 radiation 1.0 270 < th dose dependent rect. 3 15
255 109.89 radiation 20.0 10 < th dose dependent rect. 5 13
259 109.95 precipitation 0.1 270 < th dose independent rect. 6 21
260 109.95 precipitation 0.1 270 < th dose dependent rect. 6 21
275 110.35 temperature 20.0 90 > th dose independent rect. 20 8
278 110.44 wind 1.0 270 > th dose independent rect. 3 3
281 110.48 atmosphere 995.0 270 > th dose dependent rect. 3 3
295 111.02 radiation 20.0 10 < th dose dependent rect. 5 11
324 111.92 temperature 30.0 10 < th dose dependent rect. 3 23
325 112.01 radiation 20.0 10 < th dose independent rect. 5 15
329 112.06 radiation 20.0 10 < th dose dependent rect. 5 9
331 112.08 radiation 10.0 270 < th dose dependent rect. 3 11
341 112.27 humidity 50.0 90 > th dose dependent rect. 4 15
342 112.27 temperature 30.0 90 < th dose dependent rect. 3 20
343 112.32 radiation 30.0 10 < th dose dependent rect. 5 15
349 112.36 temperature 30.0 270 < th dose dependent rect. 3 3
351 112.41 wind 9.0 270 < th dose independent rect. 6 21
359 112.70 radiation 10.0 270 < th dose dependent rect. 3 4
382 113.01 wind 1.0 270 > th dose independent rect. 2 5
395 113.11 wind 7.0 270 < th dose independent rect. 3 3
396 113.11 radiation 20.0 10 < th dose dependent sin 23 NA
397 113.11 radiation 30.0 90 < th dose dependent rect. 4 5
398 113.11 temperature 30.0 90 < th dose dependent rect. 3 6
408 113.18 temperature 20.0 270 > th dose dependent rect. 23 2
411 113.21 temperature 10.0 270 > th dose independent rect. 3 3
413 113.21 temperature 30.0 270 < th dose independent rect. 3 3
414 113.21 humidity 50.0 270 > th dose independent rect. 3 3
417 113.21 atmosphere 995.0 270 > th dose independent rect. 3 3
418 113.21 atmosphere 1015.0 270 < th dose independent rect. 3 3
419 113.21 radiation 20.0 270 < th dose independent rect. 3 3
422 113.21 temperature 10.0 270 > th dose independent rect. 6 21
443 113.50 radiation 20.0 10 < th dose independent rect. 5 13
446 113.53 precipitation 0.1 270 < th dose independent rect. 5 23
448 113.53 precipitation 0.1 270 < th dose dependent rect. 5 23
452 113.57 radiation 1.0 270 < th dose independent rect. 3 3
475 113.82 humidity 50.0 10 > th dose dependent rect. 5 15
496 114.06 radiation 20.0 10 < th dose independent rect. 4 20
504 114.10 radiation 20.0 10 < th dose dependent rect. 5 19
515 114.21 temperature 30.0 10 < th dose dependent rect. 5 15
526 114.35 precipitation 0.1 270 < th dose independent rect. 3 3
527 114.35 precipitation 0.1 270 < th dose dependent rect. 3 3
532 114.42 temperature 10.0 270 > th dose dependent rect. 21 15
540 114.49 radiation 20.0 90 < th dose independent rect. 4 5
553 114.62 radiation 10.0 43200 < th dose dependent rect. 21 7
564 114.74 temperature 30.0 90 < th dose dependent rect. 3 18
617 115.12 temperature 30.0 10 < th dose dependent rect. 5 17
654 115.35 humidity 50.0 10 > th dose dependent rect. 5 13
656 115.38 radiation 20.0 10 < th dose dependent rect. 5 7
723 115.93 radiation 20.0 10 < th dose dependent rect. 5 5
731 115.98 temperature 15.0 270 > th dose dependent rect. 17 21
770 116.20 temperature 30.0 10 < th dose dependent rect. 3 21
796 116.37 radiation 10.0 10 > th dose independent sin 0 NA
831 116.60 humidity 50.0 270 > th dose dependent rect. 3 3
850 116.69 temperature 15.0 270 > th dose dependent rect. 18 19
853 116.70 wind 9.0 270 < th dose independent rect. 7 19
874 116.79 temperature 25.0 720 > th dose independent rect. 15 4
949 117.19 radiation 30.0 10 < th dose dependent rect. 12 22
967 117.28 humidity 50.0 90 > th dose dependent rect. 4 5
975 117.33 wind 7.0 270 < th dose independent rect. 2 5
981 117.37 radiation 40.0 270 < th dose dependent rect. 13 18
984 117.38 temperature 20.0 270 > th dose independent rect. 23 2
985 117.38 humidity 70.0 270 > th dose independent rect. 2 5
991 117.42 radiation 30.0 270 < th dose independent rect. 2 5
994 117.43 temperature 10.0 270 > th dose independent rect. 2 5
996 117.43 temperature 30.0 270 < th dose independent rect. 2 5
997 117.43 humidity 50.0 270 > th dose independent rect. 2 5
1000 117.43 atmosphere 1015.0 270 < th dose independent rect. 2 5