BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0169900 Os11g0169900|AK105044
(165 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0169900 Similar to Vacuolar ATP synthase 16 kDa proteo... 260 3e-70
Os12g0168900 Similar to Vacuolar ATP synthase 16 kDa proteo... 260 4e-70
Os05g0106100 Similar to Vacuolar ATP synthase 16 kDa proteo... 255 1e-68
Os02g0550100 Similar to Vacuolar ATP synthase 16 kDa proteo... 253 4e-68
Os01g0962300 Similar to Vacuolar ATP synthase 16 kDa proteo... 229 9e-61
>Os11g0169900 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 165
Score = 260 bits (665), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 138/165 (83%), Positives = 138/165 (83%)
Query: 1 MSSVFSGDETAPFFGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
MSSVFSGDETAPFFGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1 MSSVFSGDETAPFFGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
Query: 61 MAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHXXXXXXXXXXXXXXXMAIGIVGDAG 120
MAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAH MAIGIVGDAG
Sbjct: 61 MAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAG 120
Query: 121 VRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 165
VRANAQQPKLFVGM YGLIVGIILSSRAGQSRAD
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
>Os12g0168900 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 165
Score = 260 bits (664), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 137/165 (83%), Positives = 138/165 (83%)
Query: 1 MSSVFSGDETAPFFGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
MSSVFSGDETAPFFGFLGAASAL+FSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1 MSSVFSGDETAPFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
Query: 61 MAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHXXXXXXXXXXXXXXXMAIGIVGDAG 120
MAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAH MAIGIVGDAG
Sbjct: 61 MAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAG 120
Query: 121 VRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 165
VRANAQQPKLFVGM YGLIVGIILSSRAGQSRAD
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
>Os05g0106100 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 166
Score = 255 bits (652), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 134/164 (81%), Positives = 136/164 (82%)
Query: 2 SSVFSGDETAPFFGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 61
SS FSGDETAPFFGFLGAASAL+FSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM
Sbjct: 3 SSTFSGDETAPFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 62
Query: 62 AGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHXXXXXXXXXXXXXXXMAIGIVGDAGV 121
AGVLGIYGLIIAVIISTGINPKAKPY+LFDGYAH MAIGIVGDAGV
Sbjct: 63 AGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGV 122
Query: 122 RANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 165
RANAQQPKLFVGM YGLIVGIILSSRAGQSRAD
Sbjct: 123 RANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 166
>Os02g0550100 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 167
Score = 253 bits (646), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 132/164 (80%), Positives = 136/164 (82%)
Query: 2 SSVFSGDETAPFFGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 61
+S FSGDETAPFFGFLGAA+AL+FSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM
Sbjct: 4 ASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 63
Query: 62 AGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHXXXXXXXXXXXXXXXMAIGIVGDAGV 121
AGVLGIYGLIIAVIISTGINPKAKPY+LFDGYAH MAIGIVGDAGV
Sbjct: 64 AGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGV 123
Query: 122 RANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 165
RANAQQPKLFVGM YGLIVGIILSSRAGQSRAD
Sbjct: 124 RANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 167
>Os01g0962300 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 165
Score = 229 bits (583), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 120/165 (72%), Positives = 127/165 (76%)
Query: 1 MSSVFSGDETAPFFGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
MSS F+GDE APF GF+GAA AL+FSCMGAAYGTA+SGVGVA MGVMRPELVMKSIVPVV
Sbjct: 1 MSSTFNGDEFAPFLGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVV 60
Query: 61 MAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHXXXXXXXXXXXXXXXMAIGIVGDAG 120
MAGVLGIYGLIIAVII+TGINP A PYY FDG H +AIG+VGDAG
Sbjct: 61 MAGVLGIYGLIIAVIITTGINPTAMPYYHFDGSVHLAAGLATGLCALAAGLAIGVVGDAG 120
Query: 121 VRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 165
VRANAQQPKLFVGM YGLIVGIILSSRAGQSRA
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALGLYGLIVGIILSSRAGQSRAH 165
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.140 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,982,321
Number of extensions: 124821
Number of successful extensions: 382
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 6
Length of query: 165
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 72
Effective length of database: 12,179,899
Effective search space: 876952728
Effective search space used: 876952728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 152 (63.2 bits)