BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0155000 Os11g0155000|AK064254
         (60 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0155000  Dcp1-like decapping family protein                  125   7e-30
Os12g0156400  Dcp1-like decapping family protein                  104   1e-23
Os07g0249600  Dcp1-like decapping family protein                   88   1e-18
Os03g0837000  Dcp1-like decapping family protein                   72   1e-13

>Os11g0155000 Dcp1-like decapping family protein
          Length = 60

 Score =  125 bits (314), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 60/60 (100%), Positives = 60/60 (100%)

Query: 1  MIDVTFLFYLQDNLVEDLLSDFEYELQPPYLLYRNAAQEVNGIWFYNQHDCEAVASLFGR 60
          MIDVTFLFYLQDNLVEDLLSDFEYELQPPYLLYRNAAQEVNGIWFYNQHDCEAVASLFGR
Sbjct: 1  MIDVTFLFYLQDNLVEDLLSDFEYELQPPYLLYRNAAQEVNGIWFYNQHDCEAVASLFGR 60



>Os12g0156400 Dcp1-like decapping family protein
          Length = 374

 Score =  104 bits (260), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/49 (89%), Positives = 47/49 (95%)

Query: 12  DNLVEDLLSDFEYELQPPYLLYRNAAQEVNGIWFYNQHDCEAVASLFGR 60
           DNLVEDLLSDFE+ELQPPYLLYRNAAQEVNGIWFYNQ DC+AVA +FGR
Sbjct: 95  DNLVEDLLSDFEFELQPPYLLYRNAAQEVNGIWFYNQQDCDAVAGVFGR 143



>Os07g0249600 Dcp1-like decapping family protein
          Length = 382

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/49 (75%), Positives = 42/49 (85%)

Query: 12  DNLVEDLLSDFEYELQPPYLLYRNAAQEVNGIWFYNQHDCEAVASLFGR 60
           DNLVEDLL DFEY+LQ PY++YRNAAQEV GIWFYN  +CE VA+LF R
Sbjct: 90  DNLVEDLLGDFEYQLQVPYIMYRNAAQEVIGIWFYNSQECEEVANLFSR 138



>Os03g0837000 Dcp1-like decapping family protein
          Length = 445

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 36/49 (73%)

Query: 12  DNLVEDLLSDFEYELQPPYLLYRNAAQEVNGIWFYNQHDCEAVASLFGR 60
           +NL EDLL  FEY++Q PY++Y NAA E+ GIWFY+  +CE V  LF R
Sbjct: 65  ENLTEDLLGGFEYQVQVPYIMYHNAADEITGIWFYDPQECEQVGYLFSR 113



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.143    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,911,059
Number of extensions: 49260
Number of successful extensions: 132
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 4
Length of query: 60
Length of database: 17,035,801
Length adjustment: 32
Effective length of query: 28
Effective length of database: 15,364,953
Effective search space: 430218684
Effective search space used: 430218684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)