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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0837000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Dcp1-like decapping family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.26 (0.0348) R2 : 0.516
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.03 (0.093) R2dC : 0.141 R2C : 0.225
β3 : -2.5 (0.172) R2dE : 0.254 R2E : 0.368
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.219 (0.0753) R2dN8 : 0.0118 R2N8 : 0.0314
σ : 0.649
deviance : 194.14
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_____
C
peak time of C : 18.9
E
wheather : temperature
threshold : 72.3
memory length : 79
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
170 0.613 4.18 1.23 1.07 -1.9 -0.0821 -3.42 0.432 18.6 30.53 100 -- --
183.24 0.63 4.24 0.687 1.08 -2.13 0.268 -- 0.331 18.5 51.75 96 -- --
170.01 0.607 4.18 1.22 1.07 -1.9 -- -3.4 0.431 18.6 30.53 100 -- --
183.2 0.63 4.24 0.689 1.1 -2.14 -- -- 0.328 18.6 65.18 78 -- --
214.33 0.682 4.19 1.08 -- -2.58 -- -3.72 0.316 -- 31.4 221 -- --
226.75 0.706 4.17 1.12 1.53 -- 0.944 -- 0.627 17.3 -- -- -- --
228.95 0.709 4.17 1.12 1.54 -- -- -- 0.631 17.3 -- -- -- --
227.52 0.703 4.24 0.48 -- -2.9 -- -- 0.204 -- 80.83 241 -- --
194.14 0.649 4.26 -- 1.03 -2.5 -- -- 0.219 18.9 72.3 79 -- --
352.75 0.878 4.15 1.07 -- -- -- -- 0.593 -- -- -- -- --
262.11 0.757 4.2 -- 1.52 -- -- -- 0.506 17.4 -- -- -- --
233.19 0.711 4.25 -- -- -3.07 -- -- 0.133 -- 89.1 242 -- --
382.89 0.913 4.18 -- -- -- -- -- 0.474 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 153.65 temperature 15 270 > th dose dependent rect. 7 18
2 154.25 temperature 20 90 > th dose dependent rect. 8 20
53 161.54 temperature 20 10 > th dose dependent rect. 9 15
111 165.26 temperature 30 90 < th dose dependent rect. 11 22
125 166.04 temperature 30 90 < th dose dependent rect. 23 23
180 169.36 temperature 20 270 > th dose dependent rect. 17 22
195 169.91 temperature 30 90 < th dose dependent rect. 3 23
198 170.18 temperature 30 90 < th dose dependent no NA NA
199 170.23 temperature 10 270 > th dose dependent rect. 17 23
218 170.77 temperature 30 90 < th dose dependent rect. 13 23
220 170.83 temperature 20 10 > th dose dependent rect. 21 23
223 170.99 temperature 20 30 > th dose dependent rect. 1 23
224 171.07 temperature 20 90 > th dose dependent no NA NA
232 171.19 temperature 20 10 > th dose dependent no NA NA
249 171.69 temperature 10 90 > th dose dependent no NA NA
258 171.88 temperature 30 90 < th dose dependent rect. 15 23
260 171.93 temperature 30 30 < th dose dependent rect. 19 23
281 172.20 temperature 30 30 < th dose dependent rect. 17 23
303 172.72 temperature 30 90 < th dose dependent rect. 1 23
322 173.11 temperature 30 90 < th dose dependent rect. 13 20
325 173.25 temperature 25 270 > th dose independent rect. 7 19
328 173.29 temperature 25 270 > th dose independent rect. 7 17
355 173.98 temperature 30 10 < th dose dependent rect. 1 23
366 174.15 temperature 30 90 < th dose dependent rect. 21 23
371 174.26 temperature 20 30 > th dose dependent rect. 23 23
373 174.28 temperature 25 270 < th dose independent rect. 1 21
384 174.41 temperature 20 10 > th dose dependent rect. 3 23
408 174.88 temperature 30 270 < th dose dependent rect. 11 9
437 175.45 temperature 25 270 < th dose independent rect. 9 22
460 175.78 temperature 25 270 < th dose independent rect. 23 23
461 175.83 temperature 30 10 < th dose dependent sin 19 NA
465 175.86 temperature 20 90 > th dose dependent rect. 13 23
474 175.96 temperature 20 10 > th dose dependent rect. 17 23
512 176.54 temperature 20 10 > th dose dependent rect. 15 23
539 176.93 temperature 25 270 > th dose independent rect. 17 23
560 177.20 temperature 25 270 > th dose independent rect. 1 23
591 177.63 temperature 30 10 < th dose dependent rect. 5 23
607 177.86 temperature 30 90 < th dose dependent rect. 3 20
608 177.88 temperature 25 720 > th dose independent rect. 7 12
617 178.00 temperature 25 270 > th dose independent no NA NA
661 178.53 temperature 25 270 > th dose independent rect. 23 23
682 178.79 temperature 25 270 < th dose independent no NA NA
721 179.36 temperature 25 720 < th dose independent rect. 7 13
787 180.09 temperature 25 270 > th dose independent rect. 20 23
811 180.32 temperature 30 10 < th dose dependent rect. 7 23
847 180.62 temperature 25 270 < th dose independent rect. 11 10
852 180.64 temperature 10 10 > th dose dependent sin 18 NA
875 180.85 temperature 25 270 > th dose independent rect. 12 23
880 180.88 temperature 25 720 < th dose independent sin 23 NA
884 180.93 temperature 20 10 > th dose dependent rect. 11 23
920 181.32 temperature 25 720 > th dose independent sin 23 NA
930 181.39 temperature 30 720 < th dose dependent rect. 6 16
955 181.59 temperature 25 43200 > th dose independent rect. 21 1
972 181.70 temperature 25 43200 < th dose independent rect. 21 1
981 181.78 temperature 30 720 < th dose dependent sin 22 NA
983 181.80 temperature 30 90 < th dose dependent rect. 5 16