BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0837000 Os03g0837000|AK068294
         (445 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08370.1  | chr1:2638355-2640367 FORWARD LENGTH=368            130   1e-30

>AT1G08370.1 | chr1:2638355-2640367 FORWARD LENGTH=368
          Length = 367

 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 75/94 (79%)

Query: 50  TQPRFQFIVMNRKNTENLTEDLLGGFEYQVQVPYIMYHNAADEITGIWFYDPQECEQVGY 109
           TQPRFQFIVMNR+NT+NL E+LLG FEY+VQ PY++Y NA+ E+ GIWFY+ +ECE+V  
Sbjct: 69  TQPRFQFIVMNRRNTDNLVENLLGDFEYEVQGPYLLYRNASQEVNGIWFYNKRECEEVAT 128

Query: 110 LFSRIQKAFSRVSPKAKVSVTESEYEKPEVVPAV 143
           LF+RI  A+S+V+ K K S ++SE+E+ E  P +
Sbjct: 129 LFNRILSAYSKVNQKPKASSSKSEFEELEAKPTM 162



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.128    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,039,119
Number of extensions: 316585
Number of successful extensions: 1150
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1156
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 343
Effective length of database: 8,310,137
Effective search space: 2850376991
Effective search space used: 2850376991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)