BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0837000 Os03g0837000|AK068294
(445 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0837000 Dcp1-like decapping family protein 714 0.0
Os07g0249600 Dcp1-like decapping family protein 158 6e-39
Os12g0156400 Dcp1-like decapping family protein 141 1e-33
Os11g0155000 Dcp1-like decapping family protein 72 1e-12
>Os03g0837000 Dcp1-like decapping family protein
Length = 445
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/395 (91%), Positives = 360/395 (91%)
Query: 51 QPRFQFIVMNRKNTENLTEDLLGGFEYQVQVPYIMYHNAADEITGIWFYDPQECEQVGYL 110
QPRFQFIVMNRKNTENLTEDLLGGFEYQVQVPYIMYHNAADEITGIWFYDPQECEQVGYL
Sbjct: 51 QPRFQFIVMNRKNTENLTEDLLGGFEYQVQVPYIMYHNAADEITGIWFYDPQECEQVGYL 110
Query: 111 FSRIQKAFSRVSPKAKVSVTESEYEKPEVVPAVPSNEDTLKQPTSSIMLLDNAKYDFLSA 170
FSRIQKAFSRVSPKAKVSVTESEYEKPEVVPAVPSNEDTLKQPTSSIMLLDNAKYDFLSA
Sbjct: 111 FSRIQKAFSRVSPKAKVSVTESEYEKPEVVPAVPSNEDTLKQPTSSIMLLDNAKYDFLSA 170
Query: 171 LLKGAACVGATMDEASAVQSNKSVGMVHSSTHASPHAIPPQSPAIQSNKSFGMVHSSTQA 230
LLKGAACVGATMDEASAVQSNKSVGMVHSSTHASPHAIPPQSPAIQSNKSFGMVHSSTQA
Sbjct: 171 LLKGAACVGATMDEASAVQSNKSVGMVHSSTHASPHAIPPQSPAIQSNKSFGMVHSSTQA 230
Query: 231 PLAIPPQSPAIRSNKSVGMIHSSTHASPFDIPPQSPAVQSNKSVGMIHSLTHASHLAIPP 290
PLAIPPQSPAIRSNKSVGMIHSSTHASPFDIPPQSPAVQSNKSVGMIHSLTHASHLAIPP
Sbjct: 231 PLAIPPQSPAIRSNKSVGMIHSSTHASPFDIPPQSPAVQSNKSVGMIHSLTHASHLAIPP 290
Query: 291 QSPALHGLHPSQISAVPVMPHDAHRSSSTSTIQPTSLANPLFFPPMPSLQTXXXXXXXXX 350
QSPALHGLHPSQISAVPVMPHDAHRSSSTSTIQPTSLANPLFFPPMPSLQT
Sbjct: 291 QSPALHGLHPSQISAVPVMPHDAHRSSSTSTIQPTSLANPLFFPPMPSLQTASHAASSLC 350
Query: 351 XXXXXXXXITVQQLQSAPLHQPFSLPTASSIQXXXXXXXXXXXXXXXXXXFLTSGVSYGR 410
ITVQQLQSAPLHQPFSLPTASSIQ FLTSGVSYGR
Sbjct: 351 SAAPLHPPITVQQLQSAPLHQPFSLPTASSIQPPYGMPLLQPFPPPNPSPFLTSGVSYGR 410
Query: 411 PVITRDQLKDVLLSLCQNDEFIDMIYREFVKRQLP 445
PVITRDQLKDVLLSLCQNDEFIDMIYREFVKRQLP
Sbjct: 411 PVITRDQLKDVLLSLCQNDEFIDMIYREFVKRQLP 445
>Os07g0249600 Dcp1-like decapping family protein
Length = 382
Score = 158 bits (400), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 103/257 (40%), Positives = 137/257 (53%), Gaps = 45/257 (17%)
Query: 49 NTQPRFQFIVMNRKNTENLTEDLLGGFEYQVQVPYIMYHNAADEITGIWFYDPQECEQVG 108
N QPRFQF+VMNR+NT+NL EDLLG FEYQ+QVPYIMY NAA E+ GIWFY+ QECE+V
Sbjct: 74 NAQPRFQFVVMNRRNTDNLVEDLLGDFEYQLQVPYIMYRNAAQEVIGIWFYNSQECEEVA 133
Query: 109 YLFSRIQKAFSRVSPKAKVSVTESEYEKPEVVPAVPSNEDTLKQPTSSIM-LLDNAKYDF 167
LFSRI AFS+ +PK K +SE+E+ E P + E L+ TS+I+ + + D
Sbjct: 134 NLFSRILNAFSKATPKPKAPSIKSEFEELEAAPTL--VEGPLEPQTSNIIPATTHVQEDP 191
Query: 168 LSALLKGAACVGATMDEASAVQSNKSVGMVHSSTHASP-----------HAIPPQSPAIQ 216
LSA GA VG+ + A Q N+S G S+HA H +P Q+ ++
Sbjct: 192 LSAFFSGAINVGSASGLSVAGQLNQSFGSTPLSSHAPTSISISQPPAVHHLLPSQTSSVI 251
Query: 217 S-----------NKSFGMVHSSTQAPL---------------AIPPQSPAIRSNKSVGMI 250
S N+S +++ S +PL PPQ P I
Sbjct: 252 SPDVHGGTGAVVNRSASLLNPSLFSPLTSSQTTMARTNPVAPTAPPQHPRITQQP----- 306
Query: 251 HSSTHASPFDIPPQSPA 267
HS+ PF +P SP+
Sbjct: 307 HSAPLLQPFPLPTASPS 323
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 81/177 (45%), Gaps = 4/177 (2%)
Query: 265 SPAVQSNKSVGMIHSLTHASHLAIPPQSPALHGLHPSQISAVPVMPHDAHRSSSTSTIQP 324
S A Q N+S G +HA Q PA+H L PSQ S+V + D H + +
Sbjct: 209 SVAGQLNQSFGSTPLSSHAPTSISISQPPAVHHLLPSQTSSV--ISPDVHGGTGAVVNRS 266
Query: 325 TSLANPLFFPPMPSLQTXXXXXXXXXXXXXXXXXITVQQLQSAPLHQPFSLPTASSIQXX 384
SL NP F P+ S QT QQ SAPL QPF LPTAS
Sbjct: 267 ASLLNPSLFSPLTSSQTTMARTNPVAPTAPPQHPRITQQPHSAPLLQPFPLPTASP-SPP 325
Query: 385 XXXXXXXXXXXXXXXXFLTSGVSYGRPVITRDQLKDVLLSLCQNDEFIDMIYREFVK 441
L S Y PV++R++++D LL L +ND+FID++YRE VK
Sbjct: 326 YGTPLLQPFPPPNPSPSLASAPVYS-PVLSREKVRDALLRLVENDDFIDLVYREIVK 381
>Os12g0156400 Dcp1-like decapping family protein
Length = 374
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 91/131 (69%)
Query: 49 NTQPRFQFIVMNRKNTENLTEDLLGGFEYQVQVPYIMYHNAADEITGIWFYDPQECEQVG 108
N QPRFQFIVMNR+NT+NL EDLL FE+++Q PY++Y NAA E+ GIWFY+ Q+C+ V
Sbjct: 79 NKQPRFQFIVMNRRNTDNLVEDLLSDFEFELQPPYLLYRNAAQEVNGIWFYNQQDCDAVA 138
Query: 109 YLFSRIQKAFSRVSPKAKVSVTESEYEKPEVVPAVPSNEDTLKQPTSSIMLLDNAKYDFL 168
+F RI A+++V PK KV T+SE+E+ E VP + + L+ +SS +L+ NA + L
Sbjct: 139 GVFGRILNAYAKVPPKPKVPSTKSEFEELEAVPTSAAIDGPLEPSSSSTVLVSNAPDESL 198
Query: 169 SALLKGAACVG 179
+ GA VG
Sbjct: 199 TDYFSGAVNVG 209
>Os11g0155000 Dcp1-like decapping family protein
Length = 60
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/49 (57%), Positives = 36/49 (73%)
Query: 65 ENLTEDLLGGFEYQVQVPYIMYHNAADEITGIWFYDPQECEQVGYLFSR 113
+NL EDLL FEY++Q PY++Y NAA E+ GIWFY+ +CE V LF R
Sbjct: 12 DNLVEDLLSDFEYELQPPYLLYRNAAQEVNGIWFYNQHDCEAVASLFGR 60
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.128 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,072,729
Number of extensions: 535266
Number of successful extensions: 2209
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2189
Number of HSP's successfully gapped: 5
Length of query: 445
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 341
Effective length of database: 11,605,545
Effective search space: 3957490845
Effective search space used: 3957490845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)