BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0150100 Os11g0150100|AK119270
(338 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0150100 Protein of unknown function DUF868, plant fami... 332 2e-91
AK069886 89 4e-18
Os04g0407500 Protein of unknown function DUF868, plant fami... 82 8e-16
Os08g0557300 Protein of unknown function DUF868, plant fami... 80 1e-15
Os07g0572300 Protein of unknown function DUF868, plant fami... 75 5e-14
Os09g0567200 74 1e-13
Os03g0806700 Protein of unknown function DUF868, plant fami... 72 8e-13
>Os11g0150100 Protein of unknown function DUF868, plant family protein
Length = 338
Score = 332 bits (851), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 188/326 (57%), Positives = 188/326 (57%)
Query: 13 VRDFASCIXXXXXXXXXXXXCTAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRATXXXX 72
VRDFASCI CTAP YRAT
Sbjct: 13 VRDFASCIGDGAVRVADVAACTAPSSTRVSTCSSSSSTTASSSSPTLSVTVSYRATLLAA 72
Query: 73 XXXXXQLRLTWGHSPLGPTLSFAPSPTARAIQXXXXXXXXXXXXXXXXXXXXXXXXXXXX 132
QLRLTWGHSPLGPTLSFAPSPTARAIQ
Sbjct: 73 PAPPLQLRLTWGHSPLGPTLSFAPSPTARAIQLRRRRGSRSLPSGSSSGDENGGGGDESG 132
Query: 133 XXXXXXXXXLALFWDLTAARYDPAASSPEPXXXXXXXXXXXXXXXXXXXDLAAEFVKAKF 192
LALFWDLTAARYDPAASSPEP DLAAEFVKAKF
Sbjct: 133 TTTPPPPPPLALFWDLTAARYDPAASSPEPVSGYYVVAVASAEVVLAVGDLAAEFVKAKF 192
Query: 193 EGQIXXXXXXXXXXXXXXXXXDPAAMHAARVRFAEGGPEHEXXXXXXXXXXXXXXXXDEL 252
EGQI DPAAMHAARVRFAEGGPEHE DEL
Sbjct: 193 EGQIPRARVAPVSRVERVVVSDPAAMHAARVRFAEGGPEHEVSVSCAPAAPGSGGGGDEL 252
Query: 253 WVCVDGKRAVQACRLRWNFRGNQTVFVDGAPVDVMWDLHGWWFREPPGCAVVMLRARSAL 312
WVCVDGKRAVQACRLRWNFRGNQTVFVDGAPVDVMWDLHGWWFREPPGCAVVMLRARSAL
Sbjct: 253 WVCVDGKRAVQACRLRWNFRGNQTVFVDGAPVDVMWDLHGWWFREPPGCAVVMLRARSAL 312
Query: 313 ESRLWLEEEAAAPGFSLIVQAFKSPP 338
ESRLWLEEEAAAPGFSLIVQAFKSPP
Sbjct: 313 ESRLWLEEEAAAPGFSLIVQAFKSPP 338
>AK069886
Length = 349
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 81/185 (43%), Gaps = 22/185 (11%)
Query: 142 LALFWDLTAARYDPAASSPEPXXXXXXXXXXXXXXXXXXXDLAAEFVKAKFEGQIXXXXX 201
+ +FWD AARY A+ PEP D++ +V+ + G I
Sbjct: 127 VGVFWDFAAARY---AAGPEPVSGYYVAVVADAEFVLLLGDMSRGYVE-RLHGGIPIAGS 182
Query: 202 XXXXXXXXXXXXDPAAMHAARVRFAEGGPEHEXXXXXXXXXXXXXXXXDELWVCVDGKRA 261
+ R RF E G EH+ E WV VDG++
Sbjct: 183 RMARRRERFVG---CGCWSTRARFLESGAEHDIVVALDGDA--------EAWVTVDGRKV 231
Query: 262 VQACRLRWNFRGNQTVFVD-GAPVDVMWDLHGWWFRE-----PPGCAVVM-LRARSALES 314
VQ RLRWNFRG+ T+F+D GAPVD+ WDLHGW F CA V + R A E+
Sbjct: 232 VQLRRLRWNFRGSHTLFLDGGAPVDMTWDLHGWLFHAADPSPASSCAAVFTFQTRGASET 291
Query: 315 RLWLE 319
+ W+E
Sbjct: 292 KFWIE 296
>Os04g0407500 Protein of unknown function DUF868, plant family protein
Length = 185
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 58/107 (54%), Gaps = 15/107 (14%)
Query: 220 AARVRFAEGGPEHEXXXXXXXXXXXXXXXXDELWVCVDGKRAVQACRLRWNFRGNQTVFV 279
+ R RF E G EH+ E WV VDG++ VQ RLRWNFRG+ T+F+
Sbjct: 34 STRARFLESGAEHDIVVALDGDA--------EAWVTVDGRKVVQLRRLRWNFRGSHTLFL 85
Query: 280 D-GAPVDVMWDLHGWWFRE-----PPGCAVVM-LRARSALESRLWLE 319
D GAPVD+ WDLHGW F CA V + R A E++ W+E
Sbjct: 86 DGGAPVDMTWDLHGWLFHAADPSPASSCAAVFTFQTRGASETKFWIE 132
>Os08g0557300 Protein of unknown function DUF868, plant family protein
Length = 300
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 64/128 (50%), Gaps = 10/128 (7%)
Query: 216 AAMHAARVRFAEGGPEHEXXXXXXXXXXXXXXXXDELWVCVDGKRAVQACRLRWNFRGNQ 275
A H R RF EGG EHE E+ V +DGKR + R+ W FRGN+
Sbjct: 174 ATAHTTRCRFREGGAEHEVAVHATRGGGGGGEG--EVRVSIDGKRVAEVRRVGWGFRGNR 231
Query: 276 T-VFVDGAPVDVMWDLHGWWFREPPGCAVV------MLRARSALESRLWLEEE-AAAPGF 327
V DG VDVMWD+H WWF G M+RAR+ E RLW+ ++ A GF
Sbjct: 232 AAVLADGEVVDVMWDVHDWWFGRGGGGGGAGAGAQFMVRARAEKEGRLWMADQPPARGGF 291
Query: 328 SLIVQAFK 335
L VQ ++
Sbjct: 292 FLHVQCYR 299
>Os07g0572300 Protein of unknown function DUF868, plant family protein
Length = 284
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 11/126 (8%)
Query: 218 MHAARVRFAEGGPEHEXXXXXXXXXXXXXXXXDELWVCVDGKRAVQACRLRWNFRGNQTV 277
+++A+ RF + G H L + + KR +Q RL W FRGNQTV
Sbjct: 162 VYSAKARFLDIGQLHHITIECDTSGLKDP----SLEIRIGKKRVMQVKRLAWKFRGNQTV 217
Query: 278 FVDGAPVDVMWDLHGWWFREPPGCAVVMLRARSALESRLW-------LEEEAAAPGFSLI 330
+VDG PV+V+WD+H W F CAV + ++ ++E L E +A GF+LI
Sbjct: 218 YVDGLPVEVLWDVHDWLFGSSNKCAVFLFQSGQSMEKLLSRSCSQNEKELQAHRFGFTLI 277
Query: 331 VQAFKS 336
+ A+K+
Sbjct: 278 LNAWKT 283
>Os09g0567200
Length = 391
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 61/111 (54%), Gaps = 8/111 (7%)
Query: 219 HAARVRFAEGGPEHEXXXXXXXXXXXXXXXXDELWVCVDGKRAVQACRLRWNFRGNQT-V 277
H+ R RF G EHE E+ V +DGK+ V+A R++WNFRGN+T V
Sbjct: 209 HSTRCRFRADGAEHEVAVVCRGEEWGTRDG--EVAVSIDGKKVVEARRVKWNFRGNRTAV 266
Query: 278 FVDGAPVDVMWDLHGWWF-REPPGCAVVMLRAR----SALESRLWLEEEAA 323
DGA V+VMWD+H WWF G A M++AR R+W++E A+
Sbjct: 267 LGDGAVVEVMWDVHDWWFAGGGGGGAQFMVKARDGDGDGDGGRVWMDEAAS 317
>Os03g0806700 Protein of unknown function DUF868, plant family protein
Length = 291
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 218 MHAARVRFAEGGPEHEXXXXXXXXXXXXXXXXDELWVCVDGKRAVQACRLRWNFRGNQTV 277
++ A+ +F E G H+ L + VD K +Q RL W FRGNQT+
Sbjct: 169 IYTAKAQFCENGQFHDVVIECDTVSLKDPC----LEIRVDKKPVMQVKRLAWKFRGNQTI 224
Query: 278 FVDGAPVDVMWDLHGWWFREPPGCAVVMLRARSALE-------SRLWLEEEAAAPGFSLI 330
VDG PV+V WD+H W F AV M + A E S+++ E + GFSLI
Sbjct: 225 LVDGLPVEVFWDVHSWLFGLTTSNAVFMFQTCQAPEKSMPWSYSQVFRESQLQGLGFSLI 284
Query: 331 VQAFK 335
+ A+K
Sbjct: 285 LYAWK 289
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.135 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,184,558
Number of extensions: 213867
Number of successful extensions: 458
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 446
Number of HSP's successfully gapped: 7
Length of query: 338
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 237
Effective length of database: 11,762,187
Effective search space: 2787638319
Effective search space used: 2787638319
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 156 (64.7 bits)