BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0116500 Os11g0116500|AK070010
(660 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0116500 Similar to Chloroplastic outer envelope membra... 1294 0.0
Os03g0271200 Similar to Chloroplastic outer envelope membra... 888 0.0
Os02g0196300 Bacterial surface antigen (D15) family protein 97 4e-20
Os05g0510200 Similar to Glycine-rich cell wall structural p... 87 5e-17
>Os11g0116500 Similar to Chloroplastic outer envelope membrane protein (OEP75)
precursor (Outer membrane protein)
Length = 660
Score = 1294 bits (3349), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 630/660 (95%), Positives = 630/660 (95%)
Query: 1 MPSCFTLDSASDDGRSTAQGQGWPXXXXXXXXXXXXXXXXXXXXXKPSPDWDAHGLAASA 60
MPSCFTLDSASDDGRSTAQGQGWP KPSPDWDAHGLAASA
Sbjct: 1 MPSCFTLDSASDDGRSTAQGQGWPAGVGGFLSGFFSAGAARADGGKPSPDWDAHGLAASA 60
Query: 61 LPVPLSRLDGKKRYKVSDLTFLNCRTRXXXXXXXXXPLFDALRPGGVYTRAQLRDELDAL 120
LPVPLSRLDGKKRYKVSDLTFLNCRTR PLFDALRPGGVYTRAQLRDELDAL
Sbjct: 61 LPVPLSRLDGKKRYKVSDLTFLNCRTRAAAAAAAEAPLFDALRPGGVYTRAQLRDELDAL 120
Query: 121 ATSGMFDHVTLQTKPCVLPEKLQRELQGMVKRQRKVSSGLLKRMAGRIERWYHDEGFHCA 180
ATSGMFDHVTLQTKPCVLPEKLQRELQGMVKRQRKVSSGLLKRMAGRIERWYHDEGFHCA
Sbjct: 121 ATSGMFDHVTLQTKPCVLPEKLQRELQGMVKRQRKVSSGLLKRMAGRIERWYHDEGFHCA 180
Query: 181 QVVSYHGNLDAGEVVCEVVEGDITKVEYQFLDKLGNVVDGNTSIPLIDRELPQQLRPGHI 240
QVVSYHGNLDAGEVVCEVVEGDITKVEYQFLDKLGNVVDGNTSIPLIDRELPQQLRPGHI
Sbjct: 181 QVVSYHGNLDAGEVVCEVVEGDITKVEYQFLDKLGNVVDGNTSIPLIDRELPQQLRPGHI 240
Query: 241 YNNGAGKQALKNIDSLGLFSTIEVQPRPDETNQGGVIVAIKLKEHDPKSAQVITDWSIVP 300
YNNGAGKQALKNIDSLGLFSTIEVQPRPDETNQGGVIVAIKLKEHDPKSAQVITDWSIVP
Sbjct: 241 YNNGAGKQALKNIDSLGLFSTIEVQPRPDETNQGGVIVAIKLKEHDPKSAQVITDWSIVP 300
Query: 301 GSQGRPTLASIQPGGTVSFEHRNICGLKRSLIGSVTSSNLLNPEDDLSFKLEYAHPYLDG 360
GSQGRPTLASIQPGGTVSFEHRNICGLKRSLIGSVTSSNLLNPEDDLSFKLEYAHPYLDG
Sbjct: 301 GSQGRPTLASIQPGGTVSFEHRNICGLKRSLIGSVTSSNLLNPEDDLSFKLEYAHPYLDG 360
Query: 361 IDNLSRNRTFKISCFNSRKLSPIFVAGPNMYEAPPIWVDRIGFKANITESFTKQSKFTYG 420
IDNLSRNRTFKISCFNSRKLSPIFVAGPNMYEAPPIWVDRIGFKANITESFTKQSKFTYG
Sbjct: 361 IDNLSRNRTFKISCFNSRKLSPIFVAGPNMYEAPPIWVDRIGFKANITESFTKQSKFTYG 420
Query: 421 LIVEEITTRDENNNICTHGSRQLPSGALSMIGPPTTLSGTGVDRMAFLQANITRDNTEFV 480
LIVEEITTRDENNNICTHGSRQLPSGALSMIGPPTTLSGTGVDRMAFLQANITRDNTEFV
Sbjct: 421 LIVEEITTRDENNNICTHGSRQLPSGALSMIGPPTTLSGTGVDRMAFLQANITRDNTEFV 480
Query: 481 NGATIGDRCIFQMDQGLGIGSKNPFFNRHQLTVTKFINLNKQEKGSRKPPPAVLALHGRY 540
NGATIGDRCIFQMDQGLGIGSKNPFFNRHQLTVTKFINLNKQEKGSRKPPPAVLALHGRY
Sbjct: 481 NGATIGDRCIFQMDQGLGIGSKNPFFNRHQLTVTKFINLNKQEKGSRKPPPAVLALHGRY 540
Query: 541 AGCVGDLPSYDAFALGGPHSVRGYGMGELGASRNLLEVATELSVPITVKNRHTQVYAFAE 600
AGCVGDLPSYDAFALGGPHSVRGYGMGELGASRNLLEVATELSVPITVKNRHTQVYAFAE
Sbjct: 541 AGCVGDLPSYDAFALGGPHSVRGYGMGELGASRNLLEVATELSVPITVKNRHTQVYAFAE 600
Query: 601 HGTDLGSSKDVEGNPTEFFRRVGHGSSYGVGVKLGAVRAEYAVDHNAGTGAFFLRFGERF 660
HGTDLGSSKDVEGNPTEFFRRVGHGSSYGVGVKLGAVRAEYAVDHNAGTGAFFLRFGERF
Sbjct: 601 HGTDLGSSKDVEGNPTEFFRRVGHGSSYGVGVKLGAVRAEYAVDHNAGTGAFFLRFGERF 660
>Os03g0271200 Similar to Chloroplastic outer envelope membrane protein (OEP75)
precursor (Outer membrane protein)
Length = 817
Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/553 (76%), Positives = 479/553 (86%), Gaps = 15/553 (2%)
Query: 108 YTRAQLRDELDALATSGMFDHVTLQTKPCVLPEKLQRELQGMVKRQRKVSSGLLKRMAGR 167
Y R Q RD + KPC+LP+ ++ E+ GM+K+Q KVS+ LL+R+
Sbjct: 280 YLRKQERD----------YQQRVRGAKPCILPDNVRGEVLGMMKKQEKVSARLLQRIRDH 329
Query: 168 IERWYHDEGFHCAQVVSYHGNLDAGEVVCEVVEGDITKVEYQFLDKLGNVVDGNTSIPLI 227
+++WYH+EGF CAQVV++ GNL+ EVVCEVVEGDITKVEYQF DKLGN V+GNT IP+I
Sbjct: 330 VQKWYHNEGFVCAQVVNF-GNLNTSEVVCEVVEGDITKVEYQFQDKLGNFVEGNTQIPII 388
Query: 228 DRELPQQLRPGHIYNNGAGKQALKNIDSLGLFSTIEVQPRPDETNQGGVIVAIKLKEHDP 287
DRELPQQLRPGHI+N GAGKQALKNI+SL LFS IEV PRPDET +GG++V IKLKE +P
Sbjct: 389 DRELPQQLRPGHIFNIGAGKQALKNINSLALFSNIEVNPRPDETKEGGIVVEIKLKELEP 448
Query: 288 KSAQVITDWSIVPGSQGRPTLASIQPGGTVSFEHRNICGLKRSLIGSVTSSNLLNPEDDL 347
KSA+V T+WSIVPG +GRPTLASIQPGGTVSFEHRNI GL RS++GSVTSSNLLNP+DDL
Sbjct: 449 KSAEVSTEWSIVPGREGRPTLASIQPGGTVSFEHRNIYGLNRSIVGSVTSSNLLNPQDDL 508
Query: 348 SFKLEYAHPYLDGIDNLSRNRTFKISCFNSRKLSPIFVAGPNMYEAPPIWVDRIGFKANI 407
SFKLEY HPYLDG+D+ ++NRTFK SCFN+RKLSP+FVAGPNM EAPP+WVDR+GFKANI
Sbjct: 509 SFKLEYVHPYLDGVDDRNKNRTFKTSCFNTRKLSPVFVAGPNMDEAPPVWVDRVGFKANI 568
Query: 408 TESFTKQSKFTYGLIVEEITTRDENNNICTHGSRQLPSGALSMIGPPTTLSGTGVDRMAF 467
TESFT+QSKFTYGL+VEEITTRDE N+ICTHGSR +PSG LSM GPPTTLSGTG+DRMAF
Sbjct: 569 TESFTRQSKFTYGLVVEEITTRDETNSICTHGSRAMPSGGLSMDGPPTTLSGTGIDRMAF 628
Query: 468 LQANITRDNTEFVNGATIGDRCIFQMDQGLGIGSKNPFFNRHQLTVTKFINLNKQEKGSR 527
LQANITRDNTEFVNGA IGDRCIFQ+DQGLGIGSKNPFFNRHQLT+TKF+NLNKQEKG+
Sbjct: 629 LQANITRDNTEFVNGAVIGDRCIFQLDQGLGIGSKNPFFNRHQLTLTKFVNLNKQEKGAG 688
Query: 528 KPPPAVLALHGRYAGCVGDLPSYDAFALGGPHSVRGYGMGELGASRNLLEVATELSVPIT 587
KP PAVL LHG YAGCVGDLPSYDAF LGGP+SVRGYGMGELGASRN+LEVA+EL +P+
Sbjct: 689 KPLPAVLVLHGHYAGCVGDLPSYDAFTLGGPYSVRGYGMGELGASRNVLEVASELRIPV- 747
Query: 588 VKNRHTQVYAFAEHGTDLGSSKDVEGNPTEFFRRVGHGSSYGVGVKLGAVRAEYAVDHNA 647
R+T VY F EHGTDLGSSKDV+GNPTEFFRRVGHGSSYG+GVKLG VR EY VDHNA
Sbjct: 748 ---RNTYVYGFVEHGTDLGSSKDVKGNPTEFFRRVGHGSSYGLGVKLGLVRGEYIVDHNA 804
Query: 648 GTGAFFLRFGERF 660
GTG F RFGERF
Sbjct: 805 GTGTVFFRFGERF 817
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 46 KPSPDWDAHGLAASALPVPLSRLDGKKRYKVSDLTFLNCRTRXXXXXXXXXPLF---DAL 102
K S DWD HGL A+ + VP+++L G KRYK+S+L F + F L
Sbjct: 138 KSSGDWDPHGLPAN-INVPMTKLSGLKRYKISELKFFDRAAGGGGAFTGPEDSFFEMVTL 196
Query: 103 RPGGVYTRAQLRDELDALATSGMFDHVTLQTK 134
+PGGVYT++QL EL+ L + GMF+ V L+ K
Sbjct: 197 QPGGVYTKSQLLKELETLVSCGMFERVDLEGK 228
>Os02g0196300 Bacterial surface antigen (D15) family protein
Length = 513
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 120/468 (25%), Positives = 196/468 (41%), Gaps = 69/468 (14%)
Query: 161 LKRMAGRIERWYHDEGFHCAQVVSYHGNLDAGEVVCEVVEGDITKVEYQFLDK-LGNVVD 219
L ++ + WY + G +VSY L G + +V E ++ + +FLD+ G
Sbjct: 56 LDQVIKSVNGWYQERGL--TGLVSYAEILSGGILRLQVSEAEVNNINIRFLDRRTGEPTV 113
Query: 220 GNTSIPLIDRELPQQLRPGHIYNNGAGKQALKNIDSLGLFSTIEVQPRP-DETNQGGVIV 278
G T I R L + G YN K+ ++ I ++G+ + + P+P ++N+ V +
Sbjct: 114 GKTQPETILRHL--TTKKGQAYNRAQVKRDVETILTMGIMEDVTIIPQPVGDSNK--VDL 169
Query: 279 AIKLKEHDPKSAQVITDWSIVPGSQGRPTLASIQPGGTVSFEHRNICGLKRSLIGSVTSS 338
+ L E S I G P I G+ ++ HRN+ G + L S+
Sbjct: 170 VMNLVER--PSGGFSAGGGISSGITNGPLSGLI---GSFAYSHRNVFGRNKKLNLSLERG 224
Query: 339 NLLNPEDDLSFKLEYAHPYLDGIDNLSRNRTFKISCFNSRKLSPIFVAGPNMYEAPPIWV 398
+ D F+L Y P++DG DN +RT + NSR + + G + + PI +
Sbjct: 225 QI-----DSIFRLNYTDPWIDG-DNKRTSRTIMVQ--NSRTPGTL-IHGGDHPDHGPITI 275
Query: 399 DRIGFKANITESFTKQSKFTYGLIVEEITTRDENNNICTHGSRQLPSGALSMIGPPTTLS 458
R+ + F + T GLI + RD+ N R + L T S
Sbjct: 276 GRVTAGIEYSRPFRPKWSGTLGLIFQHAGARDDKGNPII---RDFYNSQL-------TAS 325
Query: 459 GTGVDR--MAFLQANIT----RDNTEFVNGATIGDRCIFQMDQGLGIGSKNPFFNRHQLT 512
G D +A L++ T R +T FV F ++QGL I + FNR
Sbjct: 326 GNAYDDTLLAKLESVYTDSGDRSSTMFV----------FNIEQGLPILPEWLSFNRVTAR 375
Query: 513 VTKFINLNKQEKGSRKPPPAVLALHGRYAGCVGDLPSYDAFALGGPHSVRGYGMGELGAS 572
+ + + PA L L G+ ++AFA+GG +SVRGY G +G+
Sbjct: 376 LRQGYEIG----------PARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYEEGAVGSG 425
Query: 573 RNLL----EVATELSVPITVKNRHTQVYAFAEHGTDLGSSKDVEGNPT 616
R+ EV+ + P+ + F ++G+DL S V G+P
Sbjct: 426 RSYAVGSGEVSCRMFGPL-------EGVVFGDYGSDLSSGPKVPGDPA 466
>Os05g0510200 Similar to Glycine-rich cell wall structural protein 1.0 precursor
(GRP 1.0)
Length = 361
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 99/202 (49%), Gaps = 31/202 (15%)
Query: 452 GPPTTLSGTGVDRMAFLQ-----ANITRDNTEFVNGATIGDRCIFQMDQGLGIGSKNPFF 506
G P T SG D M L+ A++ ++ VN QM+QGL + K+ F
Sbjct: 165 GFPLTCSGNLHDNMIILKQESGYADVNDNSFLKVN---------LQMEQGLPLVPKSLTF 215
Query: 507 NRHQLTVTKFINLNKQEKGSRKPPPAVLALHGRYAGCVGDLPSYDAFALGGPHSVRGYGM 566
NR + V+K + L P V +L G VGD+ Y AFA+GG SVRGYG
Sbjct: 216 NRVKCAVSKGMKLG--------PTFLVTSLTG--GSIVGDMAPYQAFAIGGLGSVRGYGE 265
Query: 567 GELGASRNLLEVATELSVPITVKNRHTQVYAFAEHGTDLGSSKDVEGNPTEFFRRVGHGS 626
G +GA R L E +VP+ +H + F + G+DLGS+ V GNP + G G
Sbjct: 266 GAVGAGRLCLIANCEYTVPLA---KHLEGSIFMDCGSDLGSACHVPGNPALRQGKPGFGV 322
Query: 627 SYGVGVK----LGAVRAEYAVD 644
+G G+ LG +R +YA++
Sbjct: 323 GFGYGIHFNTDLGQIRVDYAMN 344
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,225,280
Number of extensions: 1000715
Number of successful extensions: 1983
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1970
Number of HSP's successfully gapped: 5
Length of query: 660
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 553
Effective length of database: 11,448,903
Effective search space: 6331243359
Effective search space used: 6331243359
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)