Os02g0196300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Bacterial surface antigen (D15) family protein.
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Os02g0196300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Bacterial surface antigen (D15) family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.97 | 0.382 | 10.4 | -0.592 | 0.0121 | 1.61 | -0.637 | -0.316 | -0.398 | 6.8 | 20.29 | 89 | -- | -- |
| 66.09 | 0.379 | 10.4 | -0.555 | 0.00679 | 1.6 | -0.619 | -- | -0.395 | 6.71 | 20.16 | 89 | -- | -- |
| 66.93 | 0.381 | 10.4 | -0.562 | 0.0347 | 1.59 | -- | -0.123 | -0.382 | 12.1 | 20.25 | 91 | -- | -- |
| 66.94 | 0.381 | 10.4 | -0.543 | 0.0375 | 1.58 | -- | -- | -0.377 | 12.2 | 20.21 | 91 | -- | -- |
| 66.99 | 0.381 | 10.4 | -0.576 | -- | 1.61 | -- | -0.151 | -0.39 | -- | 20.23 | 89 | -- | -- |
| 105.46 | 0.481 | 10.4 | -0.203 | 0.624 | -- | 0.568 | -- | -0.109 | 15.2 | -- | -- | -- | -- |
| 106.45 | 0.483 | 10.4 | -0.192 | 0.625 | -- | -- | -- | -0.106 | 15.1 | -- | -- | -- | -- |
| 67.01 | 0.381 | 10.4 | -0.55 | -- | 1.6 | -- | -- | -0.383 | -- | 20.17 | 89 | -- | -- |
| 72.53 | 0.397 | 10.4 | -- | 0.0959 | 1.41 | -- | -- | -0.221 | 11.7 | 23.87 | 91 | -- | -- |
| 128.76 | 0.53 | 10.4 | -0.218 | -- | -- | -- | -- | -0.122 | -- | -- | -- | -- | -- |
| 107.42 | 0.485 | 10.3 | -- | 0.628 | -- | -- | -- | -0.0844 | 15.1 | -- | -- | -- | -- |
| 72.73 | 0.397 | 10.4 | -- | -- | 1.46 | -- | -- | -0.235 | -- | 24.02 | 63 | -- | -- |
| 130.02 | 0.532 | 10.4 | -- | -- | -- | -- | -- | -0.0978 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.30 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 2 | 61.87 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 5 | 62.31 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 9 | 62.92 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 16 |
| 12 | 63.07 | temperature | 20 | 90 | > th | dose dependent | sin | 1 | NA |
| 21 | 63.29 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 32 | 63.70 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 43 | 63.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 53 | 64.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 56 | 64.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 90 | 64.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 182 | 65.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 188 | 66.00 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 217 | 66.32 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 287 | 67.07 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 299 | 67.17 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 309 | 67.20 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 311 | 67.21 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 402 | 67.74 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 424 | 67.86 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 11 |
| 597 | 69.10 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 15 |
| 618 | 69.20 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 17 |
| 625 | 69.22 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 15 |
| 690 | 69.66 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 715 | 69.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 11 |
| 833 | 70.39 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 919 | 70.75 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 964 | 70.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 971 | 70.98 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |