BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0196300 Os02g0196300|AK066028
(513 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0196300 Bacterial surface antigen (D15) family protein 974 0.0
Os05g0510200 Similar to Glycine-rich cell wall structural p... 182 7e-46
Os11g0116500 Similar to Chloroplastic outer envelope membra... 95 1e-19
Os03g0271200 Similar to Chloroplastic outer envelope membra... 88 2e-17
>Os02g0196300 Bacterial surface antigen (D15) family protein
Length = 513
Score = 974 bits (2517), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/513 (93%), Positives = 482/513 (93%)
Query: 1 MPVAVDTRDGIRLVFEVEPNQDFHGLVCEGANMLPSKFLEDAFHDRHGKIINIRHLDQVI 60
MPVAVDTRDGIRLVFEVEPNQDFHGLVCEGANMLPSKFLEDAFHDRHGKIINIRHLDQVI
Sbjct: 1 MPVAVDTRDGIRLVFEVEPNQDFHGLVCEGANMLPSKFLEDAFHDRHGKIINIRHLDQVI 60
Query: 61 KSVNGWYQERGLTGLVSYAEILSGGILRLQVSEAEVNNINIRFLDRRTGEPTVGKTQPET 120
KSVNGWYQERGLTGLVSYAEILSGGILRLQVSEAEVNNINIRFLDRRTGEPTVGKTQPET
Sbjct: 61 KSVNGWYQERGLTGLVSYAEILSGGILRLQVSEAEVNNINIRFLDRRTGEPTVGKTQPET 120
Query: 121 ILRHLTTKKGQAYNRAQVKRDVETILTMGIMEDVTIIPQPVGDSNKVDLVMNLVERPXXX 180
ILRHLTTKKGQAYNRAQVKRDVETILTMGIMEDVTIIPQPVGDSNKVDLVMNLVERP
Sbjct: 121 ILRHLTTKKGQAYNRAQVKRDVETILTMGIMEDVTIIPQPVGDSNKVDLVMNLVERPSGG 180
Query: 181 XXXXXXXXXXITNGPLSGLIGSFAYSHRNVFGRNKKLNLSLERGQIDSIFRLNYTDPWID 240
ITNGPLSGLIGSFAYSHRNVFGRNKKLNLSLERGQIDSIFRLNYTDPWID
Sbjct: 181 FSAGGGISSGITNGPLSGLIGSFAYSHRNVFGRNKKLNLSLERGQIDSIFRLNYTDPWID 240
Query: 241 GDNKRTSRTIMVQNSRTPGTLIHGGDHPDHGPITIGRVTAGIEYSRPFRPKWSGTLGLIF 300
GDNKRTSRTIMVQNSRTPGTLIHGGDHPDHGPITIGRVTAGIEYSRPFRPKWSGTLGLIF
Sbjct: 241 GDNKRTSRTIMVQNSRTPGTLIHGGDHPDHGPITIGRVTAGIEYSRPFRPKWSGTLGLIF 300
Query: 301 QHAGARDDKGNPIIRDFYNSQLTASGNAYDDTLLAKLESVYTDSGDRSSTMFVFNIEQGL 360
QHAGARDDKGNPIIRDFYNSQLTASGNAYDDTLLAKLESVYTDSGDRSSTMFVFNIEQGL
Sbjct: 301 QHAGARDDKGNPIIRDFYNSQLTASGNAYDDTLLAKLESVYTDSGDRSSTMFVFNIEQGL 360
Query: 361 PILPEWLSFNRVTARLRQGYEIGPARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYEEG 420
PILPEWLSFNRVTARLRQGYEIGPARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYEEG
Sbjct: 361 PILPEWLSFNRVTARLRQGYEIGPARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYEEG 420
Query: 421 AVGSGRSYAVGSGEVSCRMFGPLEGVVFGDYGSDLSSGPKVPGDPXXXXXXXXXXXXXXX 480
AVGSGRSYAVGSGEVSCRMFGPLEGVVFGDYGSDLSSGPKVPGDP
Sbjct: 421 AVGSGRSYAVGSGEVSCRMFGPLEGVVFGDYGSDLSSGPKVPGDPAGARGKPGSGYGYGV 480
Query: 481 XXXVDSPLGPLRLEYAFNDKQARRFHFGVGYRN 513
VDSPLGPLRLEYAFNDKQARRFHFGVGYRN
Sbjct: 481 GVRVDSPLGPLRLEYAFNDKQARRFHFGVGYRN 513
>Os05g0510200 Similar to Glycine-rich cell wall structural protein 1.0 precursor
(GRP 1.0)
Length = 361
Score = 182 bits (461), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 105/322 (32%), Positives = 175/322 (54%), Gaps = 14/322 (4%)
Query: 196 LSGLIGSFAYSHRNVFGRNKKLNLSLERGQIDSIFRLNYTDP---WIDGDNKRTSRTIMV 252
S ++G + H ++FGR++KL++ L++G +S + + P W+ + ++ ++
Sbjct: 40 FSQIVGRISLKHPSLFGRSEKLDVILDKGINESNAVIAFRRPRPEWL------SQQSFVI 93
Query: 253 QNSRTPGTLIHG---GDHPDHGP--ITIGRVTAGIEYSRPFRPKWSGTLGLIFQHAGARD 307
Q++ TP +HG + G I + R++ G+E + P W+ + F+H +
Sbjct: 94 QHTMTPEIAVHGFPADNFTRSGSRGINLSRLSLGVELNEPSTSNWTSGTSVKFEHIRPVN 153
Query: 308 DKGNPIIRDFYNSQLTASGNAYDDTLLAKLESVYTDSGDRSSTMFVFNIEQGLPILPEWL 367
++G I RD LT SGN +D+ ++ K ES Y D D S +EQGLP++P+ L
Sbjct: 154 NEGRSIARDHDGFPLTCSGNLHDNMIILKQESGYADVNDNSFLKVNLQMEQGLPLVPKSL 213
Query: 368 SFNRVTARLRQGYEIGPARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYEEGAVGSGRS 427
+FNRV + +G ++GP L+ S +GG + G+ +P++AFAIGG SVRGY EGAVG+GR
Sbjct: 214 TFNRVKCAVSKGMKLGPTFLVTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGAGRL 273
Query: 428 YAVGSGEVSCRMFGPLEGVVFGDYGSDLSSGPKVPGDPXXXXXXXXXXXXXXXXXXVDSP 487
+ + E + + LEG +F D GSDL S VPG+P ++
Sbjct: 274 CLIANCEYTVPLAKHLEGSIFMDCGSDLGSACHVPGNPALRQGKPGFGVGFGYGIHFNTD 333
Query: 488 LGPLRLEYAFNDKQARRFHFGV 509
LG +R++YA N + +FG+
Sbjct: 334 LGQIRVDYAMNAFSRKTIYFGI 355
>Os11g0116500 Similar to Chloroplastic outer envelope membrane protein (OEP75)
precursor (Outer membrane protein)
Length = 660
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 116/467 (24%), Positives = 196/467 (41%), Gaps = 69/467 (14%)
Query: 56 LDQVIKSVNGWYQERGL--TGLVSYAEILSGGILRLQVSEAEVNNINIRFLDRRTGEPTV 113
L ++ + WY + G +VSY L G + +V E ++ + +FLD+ G
Sbjct: 161 LKRMAGRIERWYHDEGFHCAQVVSYHGNLDAGEVVCEVVEGDITKVEYQFLDK-LGNVVD 219
Query: 114 GKTQPETILRHL--TTKKGQAYNRAQVKRDVETILTMGIMEDVTIIPQPVGDSNKVDLVM 171
G T I R L + G YN K+ ++ I ++G+ + + P+P ++N+ +++
Sbjct: 220 GNTSIPLIDRELPQQLRPGHIYNNGAGKQALKNIDSLGLFSTIEVQPRP-DETNQGGVIV 278
Query: 172 NLVERPXXXXXXXXXXXXXITNG----PLSGLI---GSFAYSHRNVFGRNKKLNLSLERG 224
+ + I G P I G+ ++ HRN+ G + L S+
Sbjct: 279 AIKLKEHDPKSAQVITDWSIVPGSQGRPTLASIQPGGTVSFEHRNICGLKRSLIGSVTSS 338
Query: 225 QI-----DSIFRLNYTDPWIDG-DNKRTSRTIMVQ--NSRTPGTL-IHGGDHPDHGPITI 275
+ D F+L Y P++DG DN +RT + NSR + + G + + PI +
Sbjct: 339 NLLNPEDDLSFKLEYAHPYLDGIDNLSRNRTFKISCFNSRKLSPIFVAGPNMYEAPPIWV 398
Query: 276 GRVTAGIEYSRPFRPKWSGTLGLIFQHAGARDDKGNPII---RDFYNSQL-------TAS 325
R+ + F + T GLI + RD+ N R + L T S
Sbjct: 399 DRIGFKANITESFTKQSKFTYGLIVEEITTRDENNNICTHGSRQLPSGALSMIGPPTTLS 458
Query: 326 GNAYDDTLLAKLESVYTDSGDRSSTMFV----------FNIEQGLPILPEWLSFNR---- 371
G D +A L++ T R +T FV F ++QGL I + FNR
Sbjct: 459 GTGVDR--MAFLQANIT----RDNTEFVNGATIGDRCIFQMDQGLGIGSKNPFFNRHQLT 512
Query: 372 ------VTARLRQGYEIGPARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYEEGAVGSG 425
+ + + + PA L L G+ ++AFA+GG +SVRGY G +G+
Sbjct: 513 VTKFINLNKQEKGSRKPPPAVLALHGRYAGCVGDLPSYDAFALGGPHSVRGYGMGELGAS 572
Query: 426 RSYAVGSGEVSCRMFGPL-------EGVVFGDYGSDLSSGPKVPGDP 465
R+ EV+ + P+ + F ++G+DL S V G+P
Sbjct: 573 RNLL----EVATELSVPITVKNRHTQVYAFAEHGTDLGSSKDVEGNP 615
>Os03g0271200 Similar to Chloroplastic outer envelope membrane protein (OEP75)
precursor (Outer membrane protein)
Length = 817
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 106/465 (22%), Positives = 191/465 (41%), Gaps = 60/465 (12%)
Query: 51 INIRHLDQVIKSVNGWYQERGLTG--LVSYAEILSGGILRLQVSEAEVNNINIRFLDRRT 108
++ R L ++ V WY G +V++ + + ++ +V E ++ + +F D+
Sbjct: 318 VSARLLQRIRDHVQKWYHNEGFVCAQVVNFGNLNTSEVV-CEVVEGDITKVEYQFQDK-L 375
Query: 109 GEPTVGKTQPETILRHL--TTKKGQAYNRAQVKRDVETILTMGIMEDVTIIPQPVGDSNK 166
G G TQ I R L + G +N K+ ++ I ++ + ++ + P+P ++ +
Sbjct: 376 GNFVEGNTQIPIIDRELPQQLRPGHIFNIGAGKQALKNINSLALFSNIEVNPRP-DETKE 434
Query: 167 VDLVMNLVERPXXXXXXXXXXXXXITNG----PLSGLI---GSFAYSHRNVFGRNKKL-- 217
+V+ + + I G P I G+ ++ HRN++G N+ +
Sbjct: 435 GGIVVEIKLKELEPKSAEVSTEWSIVPGREGRPTLASIQPGGTVSFEHRNIYGLNRSIVG 494
Query: 218 ---NLSLERGQIDSIFRLNYTDPWIDG----DNKRTSRTIMVQNSRTPGTLIHGGDHPDH 270
+ +L Q D F+L Y P++DG + RT +T + + G + +
Sbjct: 495 SVTSSNLLNPQDDLSFKLEYVHPYLDGVDDRNKNRTFKTSCFNTRKLSPVFVAGPNMDEA 554
Query: 271 GPITIGRVTAGIEYSRPFRPKWSGTLGLIFQHAGARDDKGNPIIRDFYNSQLTASGNAYD 330
P+ + RV + F + T GL+ + RD+ N I + S+ SG
Sbjct: 555 PPVWVDRVGFKANITESFTRQSKFTYGLVVEEITTRDET-NSICT--HGSRAMPSGGLSM 611
Query: 331 DTLLAKLESVYTD-------SGDRSSTMFV----------FNIEQGLPILPEWLSFNRVT 373
D L D + R +T FV F ++QGL I + FNR
Sbjct: 612 DGPPTTLSGTGIDRMAFLQANITRDNTEFVNGAVIGDRCIFQLDQGLGIGSKNPFFNRHQ 671
Query: 374 ARLRQGYEIG----------PARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYEEGAVG 423
L + + PA L+L G+ ++AF +GG SVRGY G +G
Sbjct: 672 LTLTKFVNLNKQEKGAGKPLPAVLVLHGHYAGCVGDLPSYDAFTLGGPYSVRGYGMGELG 731
Query: 424 SGRSYAVGSGEVSCRMFGPLEGVV---FGDYGSDLSSGPKVPGDP 465
+ R+ EV+ + P+ F ++G+DL S V G+P
Sbjct: 732 ASRNVL----EVASELRIPVRNTYVYGFVEHGTDLGSSKDVKGNP 772
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.139 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,539,581
Number of extensions: 770018
Number of successful extensions: 1665
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1658
Number of HSP's successfully gapped: 4
Length of query: 513
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 408
Effective length of database: 11,553,331
Effective search space: 4713759048
Effective search space used: 4713759048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)