BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0109900 Os11g0109900|AK063961
(473 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0109900 Double-stranded RNA binding domain containing ... 909 0.0
Os12g0109900 Double-stranded RNA binding domain containing ... 783 0.0
Os05g0307400 Similar to Regulatory associated protein of mT... 634 0.0
Os05g0150400 Double-stranded RNA binding domain containing ... 109 4e-24
Os10g0480500 Double-stranded RNA binding domain containing ... 99 7e-21
Os08g0384100 Double-stranded RNA binding domain containing ... 93 3e-19
>Os11g0109900 Double-stranded RNA binding domain containing protein
Length = 473
Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/473 (95%), Positives = 451/473 (95%)
Query: 1 MDMPPTPLPPETANTSPAPNGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPS 60
MDMPPTPLPPETANTSPAPNGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPS
Sbjct: 1 MDMPPTPLPPETANTSPAPNGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPS 60
Query: 61 HEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGLCK 120
HEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGLCK
Sbjct: 61 HEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGLCK 120
Query: 121 NLLQEYAQKMNYAIPSYICTKSASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTAL 180
NLLQEYAQKMNYAIPSYICTKSASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTAL
Sbjct: 121 NLLQEYAQKMNYAIPSYICTKSASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTAL 180
Query: 181 LAIQGQSEGSANGATKYIVVPGKRVGKEVEKMPIETPXXXXXXXXXXXXXXXXXXXXXXD 240
LAIQGQSEGSANGATKYIVVPGKRVGKEVEKMPIETP D
Sbjct: 181 LAIQGQSEGSANGATKYIVVPGKRVGKEVEKMPIETPKPLKIKKGGFKKKWNKRKFMKKD 240
Query: 241 GQAVVEKDEARVAGDAHDSDVLMQPTVITQEASCGTLFLQPCEEAKRVEAEPPRDIEMVQ 300
GQAVVEKDEARVAGDAHDSDVLMQPTVITQEASCGTLFLQPCEEAKRVEAEPPRDIEMVQ
Sbjct: 241 GQAVVEKDEARVAGDAHDSDVLMQPTVITQEASCGTLFLQPCEEAKRVEAEPPRDIEMVQ 300
Query: 301 PDKENQHSDAALVQPDDEARVEQEPSRDISVVPPNEEAISVKQEPSIDAAILQPKEEASS 360
PDKENQHSDAALVQPDDEARVEQEPSRDISVVPPNEEAISVKQEPSIDAAILQPKEEASS
Sbjct: 301 PDKENQHSDAALVQPDDEARVEQEPSRDISVVPPNEEAISVKQEPSIDAAILQPKEEASS 360
Query: 361 VKQEPFIDTAMLQACKEAGSVELGPARDTVISQLNEQDRGVKQEPAGDTAVPQPDVDARV 420
VKQEPFIDTAMLQACKEAGSVELGPARDTVISQLNEQDRGVKQEPAGDTAVPQPDVDARV
Sbjct: 361 VKQEPFIDTAMLQACKEAGSVELGPARDTVISQLNEQDRGVKQEPAGDTAVPQPDVDARV 420
Query: 421 VKEESPRTEPNGEATNMKETPKNSAVCNSPETKEFGDITAMGSDPPATNMSEE 473
VKEESPRTEPNGEATNMKETPKNSAVCNSPETKEFGDITAMGSDPPATNMSEE
Sbjct: 421 VKEESPRTEPNGEATNMKETPKNSAVCNSPETKEFGDITAMGSDPPATNMSEE 473
>Os12g0109900 Double-stranded RNA binding domain containing protein
Length = 424
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/424 (92%), Positives = 393/424 (92%), Gaps = 1/424 (0%)
Query: 1 MDMPPTPLPPETANTSPAPNGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPS 60
MDMPPTPLPPETANTSPAPNGATAGIRVENCYVFKSRLQEYAQK GLQTPEYHTFKEGPS
Sbjct: 1 MDMPPTPLPPETANTSPAPNGATAGIRVENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPS 60
Query: 61 HEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGLCK 120
HEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGLCK
Sbjct: 61 HEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGLCK 120
Query: 121 NLLQEYAQKMNYAIPSYICTKSASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTAL 180
NLLQEYAQKMNYAIPSYICTKSASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTAL
Sbjct: 121 NLLQEYAQKMNYAIPSYICTKSASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTAL 180
Query: 181 LAIQGQSEGSANGATKYIVVPGKRVGKEVEKMPIETPXXXXXXXXXXXXXXXXXXXXXXD 240
LAIQGQSEGSANGATKYIVVPGKRVGKEVEK PIETP D
Sbjct: 181 LAIQGQSEGSANGATKYIVVPGKRVGKEVEKRPIETPKPLKVKKGGFKKKWNKRKFMKKD 240
Query: 241 GQAV-VEKDEARVAGDAHDSDVLMQPTVITQEASCGTLFLQPCEEAKRVEAEPPRDIEMV 299
GQAV VEKDEARVAGDAHDSDVLMQPTVITQEASCGTLFLQPCEEAKRVEAEPPRDIEMV
Sbjct: 241 GQAVDVEKDEARVAGDAHDSDVLMQPTVITQEASCGTLFLQPCEEAKRVEAEPPRDIEMV 300
Query: 300 QPDKENQHSDAALVQPDDEARVEQEPSRDISVVPPNEEAISVKQEPSIDAAILQPKEEAS 359
QPDKENQHSDAALVQPDDEARVEQEPSRDISVV PNEEAIS KQEPSIDAAILQPKEEAS
Sbjct: 301 QPDKENQHSDAALVQPDDEARVEQEPSRDISVVQPNEEAISGKQEPSIDAAILQPKEEAS 360
Query: 360 SVKQEPFIDTAMLQACKEAGSVELGPARDTVISQLNEQDRGVKQEPAGDTAVPQPDVDAR 419
SVKQEPFIDTAMLQACKEAGSVELGPARDTVISQLNEQDR VKQEPAGD VPQPDV AR
Sbjct: 361 SVKQEPFIDTAMLQACKEAGSVELGPARDTVISQLNEQDRAVKQEPAGDIVVPQPDVHAR 420
Query: 420 VVKE 423
VVKE
Sbjct: 421 VVKE 424
>Os05g0307400 Similar to Regulatory associated protein of mTOR (Raptor) (P150
target of rapamycin (TOR)-scaffold protein)
Length = 437
Score = 634 bits (1635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/355 (90%), Positives = 322/355 (90%), Gaps = 1/355 (0%)
Query: 5 PTPLPPETANTSPAPNGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPV 64
PTPLPPETANTSPAP GATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHT KEGPSHEPV
Sbjct: 7 PTPLPPETANTSPAPIGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPV 66
Query: 65 FKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGLCKNLLQ 124
FKSTVVINNTSY SLPGF NRKAAEQSAAEVALMEIVKSIPANANIPAVQETGLCKNLLQ
Sbjct: 67 FKSTVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGLCKNLLQ 126
Query: 125 EYAQKMNYAIPSYICTKSASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 184
EYAQKMNYAIPSYICTK ASGLAPF+CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ
Sbjct: 127 EYAQKMNYAIPSYICTKPASGLAPFLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 186
Query: 185 GQSEGSANGATKYIVVPGKRVGKEVEKMPIETPXXXXXXXXXXXXXXXXXXXXXXDGQAV 244
GQSEGSANGATKYIVVPGKRVGKEVEK PIETP DGQAV
Sbjct: 187 GQSEGSANGATKYIVVPGKRVGKEVEKRPIETPKPLKAKKGGFKKKWNKRKFMKKDGQAV 246
Query: 245 -VEKDEARVAGDAHDSDVLMQPTVITQEASCGTLFLQPCEEAKRVEAEPPRDIEMVQPDK 303
VEKDEARVAGDAHDSDVLMQPTVITQEASCGTLFLQPCEEAKRVE EPPRDIEMVQPDK
Sbjct: 247 DVEKDEARVAGDAHDSDVLMQPTVITQEASCGTLFLQPCEEAKRVEDEPPRDIEMVQPDK 306
Query: 304 ENQHSDAALVQPDDEARVEQEPSRDISVVPPNEEAISVKQEPSIDAAILQPKEEA 358
ENQHSDAALVQPDDEARVEQEPSRDISVV PNEEAIS KQEPSIDAA LQPKEEA
Sbjct: 307 ENQHSDAALVQPDDEARVEQEPSRDISVVQPNEEAISAKQEPSIDAATLQPKEEA 361
>Os05g0150400 Double-stranded RNA binding domain containing protein
Length = 593
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 89/151 (58%), Gaps = 4/151 (2%)
Query: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNR-KAAEQS 91
++K++LQE AQ++ P Y +EGP H P FK+TV N +++S P F + + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFES-PAFCSTLRLAEHA 59
Query: 92 AAEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-F 149
AAEVAL E+ K P+++ V ETG+ KNLLQE A + +P Y +S G P F
Sbjct: 60 AAEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVF 119
Query: 150 ICTVEIGGIQYIGAAARTKKDAEIKAARTAL 180
CTVE+ G+ + G +TKK A+ AA A
Sbjct: 120 TCTVELAGMTFTGNPGKTKKQAQKNAAMAAW 150
>Os10g0480500 Double-stranded RNA binding domain containing protein
Length = 514
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 84/155 (54%), Gaps = 4/155 (2%)
Query: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFN--RKAAEQ 90
++K++LQE AQ++ P Y +EGP H P FK+ V N ++S PGFF R+A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFES-PGFFTTLRQAEHA 59
Query: 91 SAAEVALMEIVKSIPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-F 149
+A + + + ETG+ KNLLQE AQ++ +PSY +S G P F
Sbjct: 60 AAEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVF 119
Query: 150 ICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 184
CTVE+ GI + G A+ KK AE AA A +++
Sbjct: 120 TCTVELAGITFTGDPAKNKKQAEKNAASAAWSSLR 154
>Os08g0384100 Double-stranded RNA binding domain containing protein
Length = 312
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 5/155 (3%)
Query: 34 FKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAA 93
+KS+LQEY Q+A Q P Y T +G H+ FKSTV+++ + S K AEQ AA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 94 EVA---LMEIVKSIPANANIPAV--QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP 148
+VA L+E ++ + ++ + Q+ K++L EY K P Y TK+ + P
Sbjct: 99 KVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTEGSVTP 158
Query: 149 FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAI 183
++ +V G Y G AAR KKDAE KAAR A+ ++
Sbjct: 159 YVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSL 193
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.308 0.126 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,115,049
Number of extensions: 674271
Number of successful extensions: 2668
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2606
Number of HSP's successfully gapped: 6
Length of query: 473
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 368
Effective length of database: 11,553,331
Effective search space: 4251625808
Effective search space used: 4251625808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 158 (65.5 bits)