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Os10g0480500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Double-stranded RNA binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.06 (0.0276) R2 : 0.474
β1 : 0.755 (0.101) R2dD : 0.0672 R2D : 0.0676
β2 : 4.08 (0.222) R2dC : 4.35 R2C : -4.19
β3 : 4.08 (0.217) R2dE : 4.58 R2E : -3.93
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.097 (0.0588) R2dN8 : 0.00428 R2N8 : 0.00772
σ : 0.515
deviance : 122.15
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C
peak time of C : 13.8
E
wheather : radiation
threshold : 0.77
memory length : 725
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17
open length of G : 6.75

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
117.8 0.51 7.06 0.79 4.06 4.07 -1.19 -2.11 -0.0967 13.8 0.76 725 17 6.81
118.73 0.507 7.06 0.729 4.08 4.08 0.93 -- -0.0977 13.8 0.7676 724 17 6.75
118.07 0.506 7.06 0.763 4.07 4.07 -- -0.981 -0.0998 13.8 0.7658 725 17 6.8
122.15 0.515 7.06 0.755 4.08 4.08 -- -- -0.097 13.8 0.77 725 17 6.75
169.31 0.606 7.09 0.692 -- 0.874 -- -0.195 -0.096 -- 22.24 5498 18.6 7.03
152.26 0.578 7.06 0.706 1.08 -- 0.198 -- -0.118 7.81 -- -- -- --
152.37 0.578 7.06 0.71 1.08 -- -- -- -0.119 7.77 -- -- -- --
149.22 0.569 7.1 0.715 -- 1.18 -- -- -0.0749 -- 46.91 3559 21.1 9.92
137.41 0.546 7.06 -- 4.09 4.11 -- -- -0.134 13.8 0.77 721 17 6.8
215.7 0.686 7.08 0.724 -- -- -- -- -0.103 -- -- -- -- --
165.67 0.602 7.08 -- 1.09 -- -- -- -0.198 7.73 -- -- -- --
161.98 0.593 7.11 -- -- 1.23 -- -- -0.21 -- 41.45 3569 20.8 10.2
229.51 0.707 7.1 -- -- -- -- -- -0.184 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 119.73 temperature 10.0 720 > th dose dependent rect. 15 3
2 120.47 radiation 1.0 720 < th dose independent rect. 17 7
4 121.22 radiation 1.0 720 < th dose dependent rect. 17 7
8 122.11 radiation 1.0 720 > th dose independent rect. 15 3
11 122.29 temperature 25.0 720 > th dose independent rect. 15 4
12 122.54 temperature 25.0 720 > th dose independent rect. 16 2
14 122.57 radiation 1.0 720 > th dose independent rect. 15 14
31 123.45 temperature 25.0 270 < th dose independent rect. 15 15
46 125.34 temperature 10.0 270 > th dose dependent rect. 16 11
58 125.94 wind 5.0 90 < th dose independent rect. 15 13
61 126.14 temperature 25.0 720 < th dose independent rect. 14 10
63 126.20 temperature 25.0 720 < th dose independent rect. 15 8
71 126.39 wind 7.0 720 < th dose independent rect. 15 3
76 126.47 temperature 25.0 720 > th dose dependent rect. 15 11
80 126.49 temperature 20.0 270 > th dose dependent rect. 23 3
89 126.61 temperature 10.0 720 > th dose dependent rect. 3 3
95 126.67 wind 7.0 720 < th dose independent rect. 15 12
116 127.12 temperature 30.0 90 < th dose dependent rect. 16 15
117 127.13 wind 9.0 4320 < th dose independent rect. 3 1
137 127.54 radiation 1.0 14400 < th dose dependent rect. 3 1
141 127.55 temperature 15.0 10 > th dose dependent rect. 17 12
143 127.56 temperature 25.0 720 > th dose independent rect. 15 10
172 128.01 temperature 25.0 720 < th dose independent sin 16 NA
182 128.11 temperature 20.0 270 > th dose dependent rect. 22 5
220 128.47 temperature 25.0 720 < th dose independent rect. 18 1
245 128.73 temperature 10.0 1440 > th dose independent rect. 3 1
248 128.73 temperature 30.0 1440 < th dose independent rect. 3 1
252 128.73 humidity 50.0 1440 > th dose independent rect. 3 1
261 128.73 atmosphere 995.0 1440 > th dose independent rect. 3 1
262 128.73 radiation 1.0 1440 < th dose independent rect. 3 1
282 128.73 temperature 10.0 1440 > th dose independent rect. 4 23
285 128.73 radiation 1.0 1440 < th dose dependent rect. 3 1
317 129.06 temperature 25.0 270 > th dose independent rect. 23 3
361 129.49 wind 5.0 720 < th dose independent rect. 17 1
376 129.59 wind 9.0 90 < th dose dependent rect. 15 13
394 129.72 radiation 1.0 720 < th dose independent rect. 3 21
458 130.30 atmosphere 1005.0 270 > th dose independent rect. 24 1
462 130.32 atmosphere 1015.0 720 < th dose independent rect. 3 12
470 130.42 precipitation 0.1 720 < th dose independent rect. 15 12
471 130.42 precipitation 0.1 720 < th dose dependent rect. 15 12
474 130.46 temperature 25.0 720 > th dose dependent sin 13 NA
484 130.54 atmosphere 1005.0 90 > th dose independent rect. 24 4
486 130.56 radiation 1.0 720 > th dose independent rect. 15 21
500 130.68 wind 9.0 720 < th dose independent rect. 24 18
507 130.77 precipitation 0.1 720 < th dose independent rect. 15 3
508 130.77 precipitation 0.1 720 < th dose dependent rect. 15 3
531 131.03 radiation 40.0 720 < th dose independent rect. 15 12
539 131.07 temperature 10.0 720 > th dose independent rect. 3 12
540 131.07 temperature 10.0 720 > th dose independent rect. 15 12
559 131.21 humidity 50.0 720 > th dose independent rect. 17 7
562 131.22 temperature 20.0 10 > th dose dependent rect. 24 5
598 131.45 humidity 50.0 720 > th dose independent rect. 3 21
603 131.47 wind 9.0 10 < th dose dependent rect. 16 13
606 131.48 precipitation 0.1 720 < th dose independent rect. 24 18
607 131.48 precipitation 0.1 720 < th dose dependent rect. 24 18
640 131.65 radiation 1.0 720 > th dose independent sin 16 NA
648 131.71 radiation 1.0 720 < th dose dependent rect. 3 21
672 131.90 wind 9.0 720 < th dose independent rect. 7 20
685 131.93 radiation 1.0 720 < th dose independent sin 16 NA
700 132.02 precipitation 0.1 720 < th dose independent rect. 3 12
701 132.02 precipitation 0.1 720 < th dose dependent rect. 3 12
705 132.05 radiation 1.0 720 < th dose dependent sin 17 NA
712 132.09 temperature 25.0 720 > th dose independent sin 16 NA
714 132.10 radiation 10.0 720 < th dose independent rect. 3 3
723 132.16 atmosphere 1015.0 1440 < th dose independent rect. 3 1
747 132.34 wind 7.0 720 < th dose independent rect. 15 20
753 132.37 atmosphere 1005.0 10 > th dose independent rect. 24 5
780 132.53 temperature 10.0 720 > th dose independent rect. 18 6
782 132.53 radiation 20.0 720 < th dose independent rect. 18 6
786 132.53 temperature 10.0 720 > th dose independent rect. 24 18
788 132.55 temperature 20.0 720 > th dose independent rect. 4 2
794 132.56 atmosphere 995.0 720 > th dose independent rect. 3 12
810 132.66 radiation 1.0 720 > th dose independent rect. 7 11
812 132.67 atmosphere 1005.0 90 > th dose independent rect. 2 1
825 132.72 radiation 1.0 720 > th dose independent rect. 7 22
829 132.74 humidity 50.0 30 > th dose independent rect. 3 23
832 132.76 temperature 25.0 90 > th dose independent rect. 1 1
835 132.77 wind 1.0 30 < th dose independent rect. 2 1
838 132.78 wind 9.0 720 < th dose independent rect. 6 6
856 132.82 atmosphere 1005.0 270 > th dose dependent rect. 24 1
860 132.84 temperature 10.0 720 > th dose independent rect. 6 6
861 132.84 atmosphere 995.0 720 > th dose independent rect. 6 6
862 132.84 atmosphere 1015.0 720 < th dose independent rect. 6 6
864 132.84 temperature 10.0 720 > th dose independent rect. 12 18
866 132.85 atmosphere 1015.0 720 < th dose independent rect. 3 4
870 132.86 wind 9.0 720 < th dose dependent rect. 24 3
879 132.91 wind 1.0 30 < th dose dependent rect. 2 1
930 133.17 precipitation 0.1 720 < th dose independent rect. 6 6
932 133.17 precipitation 0.1 720 < th dose dependent rect. 6 6
937 133.18 atmosphere 1005.0 30 > th dose dependent rect. 2 1
958 133.25 atmosphere 1005.0 90 > th dose dependent rect. 24 4
964 133.28 atmosphere 995.0 30 > th dose independent rect. 3 23
974 133.32 humidity 70.0 720 > th dose independent rect. 3 4
976 133.33 wind 9.0 720 < th dose independent rect. 3 12
993 133.39 atmosphere 995.0 720 > th dose independent rect. 18 6