BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0480500 Os10g0480500|AK066524
(514 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G28380.1 | chr2:12134098-12135915 REVERSE LENGTH=435 344 6e-95
AT5G41070.1 | chr5:16438547-16439916 FORWARD LENGTH=394 216 3e-56
AT3G26932.1 | chr3:9930460-9931714 REVERSE LENGTH=360 211 9e-55
AT3G62800.1 | chr3:23225749-23227163 REVERSE LENGTH=356 97 3e-20
AT1G09700.1 | chr1:3137960-3140118 REVERSE LENGTH=420 80 2e-15
>AT2G28380.1 | chr2:12134098-12135915 REVERSE LENGTH=435
Length = 434
Score = 344 bits (883), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 200/352 (56%), Positives = 234/352 (66%), Gaps = 15/352 (4%)
Query: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQXXXXX 60
MYKNQLQELAQRSCFNLP+YTC+REGPDHAPRFKA VNFNGE FESP + +TLRQ
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 61 XXXXXXXXXRRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
RGPS+SLAARILDETGVYKNLLQE+AQRVGAPLP YTT RSGLGH PVFT
Sbjct: 61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 121 CTVELAGITFTGDPXXXXXXXXXXXXXXXWSSLRQLVRQEASSSNEPESNDEQEQIRIAR 180
TVELAGITFTGDP WSSL+QL ++ +SS EPE+ DE EQ+ IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180
Query: 181 ALLNYRLKEKMAMANNPHA-SPFPKKFPMQPERRTAFPQSSHSSYSKILPLFRPKSNSRS 239
AL+NYR+KE + ++ A PF KKF MQ R T+ PQ S ++ S+ILP PK SRS
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTS-PQPSPATTSRILPFICPKQPSRS 239
Query: 240 RPESPAASDAASQTPFRPTESPN---PRSRFPAAEAAPYVPVGHFRMPCHSMAPPVTVRT 296
S AA+ + ES + P+ RF PYVP+ FR CH MAPPVT+RT
Sbjct: 240 SRSSLAATSGIDRIMAAALESRSYQRPQQRFA---NPPYVPMRQFRSQCHGMAPPVTIRT 296
Query: 297 SIPVFSAPPLPPPGARTQQ-------LPPLMSHPPPIRMASPVRIRPAPPLF 341
++PVFSAPP+PPP +P LM PP+R+A PV IR A P+F
Sbjct: 297 AVPVFSAPPMPPPPCTNNTQLPSSVYVPSLMRTAPPVRIAPPVTIRTAVPVF 348
>AT5G41070.1 | chr5:16438547-16439916 FORWARD LENGTH=394
Length = 393
Score = 216 bits (549), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 130/339 (38%), Positives = 174/339 (51%), Gaps = 46/339 (13%)
Query: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQXXXXX 60
MYKNQLQELAQRSCFNLP+YTC+REGPDHAPRFKA+VNFNGE FESP + +TLRQ
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 XXXXXXXXXRRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
R PS SL A+ILDETG+YKNLLQE A R G LP YT+ RSG H P F+
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 121 CTVELAGITFTGDPXXXXXXXXXXXXXXXWSSLRQLVRQEASSSNEPESNDEQEQIRIAR 180
CTVELAG+TFTG+ WSSL+++ S+ ++E+EQ +AR
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM-------SSLDSQDEEKEQEAVAR 173
Query: 181 ALLNYRLKEKMAMANNPHASPFPKKFPMQPERRTAF-----------------------P 217
L ++ KE + + + ++ Q +
Sbjct: 174 VLSRFKPKE---VRRRETTNQWRRRTSQQDSNKDLLIERLRWINLLTNQASSSSSTSTPN 230
Query: 218 QSSHSSY------------SKILPLFRP-KSNSRSRPESPAASDAASQTPFRPTESPNPR 264
Q +SS+ SKILP + K S ++ A++ + S
Sbjct: 231 QHKNSSFISLIPPPPPPKSSKILPFIQQYKDRSSQEAKTETATEMINSKAKVNETSTRLS 290
Query: 265 SRFPAAEAAPYVPVGHFRMPCHSMAPPVTVRTSIPVFSA 303
+ P ++ Y VG + +S+AP V +R+ IPVF+A
Sbjct: 291 KQMPFSDMNRYNFVGGCSVNPYSLAPAVQMRSVIPVFAA 329
>AT3G26932.1 | chr3:9930460-9931714 REVERSE LENGTH=360
Length = 359
Score = 211 bits (536), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 103/189 (54%), Positives = 124/189 (65%), Gaps = 6/189 (3%)
Query: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQXXXXX 60
MYKNQLQELAQRSCF+LP+YTC REGPDHAPRFKA+VNFNGE FESP + +TLRQ
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 61 XXXXXXXXXRRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
+GPS SL AR+LDETG+YKNLLQE A R G LP YT+ RSG GH+P F+
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 121 CTVELAGITFTGDPXXXXXXXXXXXXXXXWSSLRQLVRQEASSSNEPESNDEQEQIRIAR 180
CTVELAG++F G+ W SLR++ R +P +E+EQ +AR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPRL------DPLRGEEKEQEIVAR 174
Query: 181 ALLNYRLKE 189
L +R KE
Sbjct: 175 VLSRFRPKE 183
>AT3G62800.1 | chr3:23225749-23227163 REVERSE LENGTH=356
Length = 355
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQXXXXX 60
+YK QLQ A + LP Y REGP HAPRF+ V F G+ F+S FF TL+
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 XXXXXXXXXRRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
+ P A YKNLLQE+AQ+ + LP Y T SG H P FT
Sbjct: 64 AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115
Query: 121 CTVELAGITFTGD 133
TVE AG F+G+
Sbjct: 116 STVEFAGKVFSGE 128
>AT1G09700.1 | chr1:3137960-3140118 REVERSE LENGTH=420
Length = 419
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 5/135 (3%)
Query: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFES-PGFFTTLRQXXXX 59
++K++LQE AQ+ P Y ++EGP H F++ V +G ++ S PGFF R+
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFN--RKAAEQ 72
Query: 60 XXXXXXXXXXRRGPSYS-LAARILDETGVYKNLLQEVAQRVGAPLPSYTTER-SGLGHLP 117
+ S ++ + ETG+ KNLLQE AQ++ +P Y ++ LG +
Sbjct: 73 SAAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVT 132
Query: 118 VFTCTVELAGITFTG 132
FTCTVE+ GI +TG
Sbjct: 133 QFTCTVEIGGIKYTG 147
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,965,344
Number of extensions: 503728
Number of successful extensions: 5560
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 4507
Number of HSP's successfully gapped: 59
Length of query: 514
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 411
Effective length of database: 8,282,721
Effective search space: 3404198331
Effective search space used: 3404198331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)