BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0480500 Os10g0480500|AK066524
(514 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0480500 Double-stranded RNA binding domain containing ... 944 0.0
Os05g0150400 Double-stranded RNA binding domain containing ... 234 1e-61
Os12g0109900 Double-stranded RNA binding domain containing ... 88 2e-17
Os11g0109900 Double-stranded RNA binding domain containing ... 88 2e-17
Os05g0307400 Similar to Regulatory associated protein of mT... 78 2e-14
>Os10g0480500 Double-stranded RNA binding domain containing protein
Length = 514
Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/514 (92%), Positives = 474/514 (92%)
Query: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQXXXXX 60
MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQ
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 61 XXXXXXXXXRRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
RRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 121 CTVELAGITFTGDPXXXXXXXXXXXXXXXWSSLRQLVRQEASSSNEPESNDEQEQIRIAR 180
CTVELAGITFTGDP WSSLRQLVRQEASSSNEPESNDEQEQIRIAR
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQLVRQEASSSNEPESNDEQEQIRIAR 180
Query: 181 ALLNYRLKEKMAMANNPHASPFPKKFPMQPERRTAFPQSSHSSYSKILPLFRPKSNSRSR 240
ALLNYRLKEKMAMANNPHASPFPKKFPMQPERRTAFPQSSHSSYSKILPLFRPKSNSRSR
Sbjct: 181 ALLNYRLKEKMAMANNPHASPFPKKFPMQPERRTAFPQSSHSSYSKILPLFRPKSNSRSR 240
Query: 241 PESPAASDAASQTPFRPTESPNPRSRFPAAEAAPYVPVGHFRMPCHSMAPPVTVRTSIPV 300
PESPAASDAASQTPFRPTESPNPRSRFPAAEAAPYVPVGHFRMPCHSMAPPVTVRTSIPV
Sbjct: 241 PESPAASDAASQTPFRPTESPNPRSRFPAAEAAPYVPVGHFRMPCHSMAPPVTVRTSIPV 300
Query: 301 FSAPPLPPPGARTQQLPPLMSHPPPIRMASPVRIRPAPPLFTPSAVQGPKPMMPVQIKDV 360
FSAPPLPPPGARTQQLPPLMSHPPPIRMASPVRIRPAPPLFTPSAVQGPKPMMPVQIKDV
Sbjct: 301 FSAPPLPPPGARTQQLPPLMSHPPPIRMASPVRIRPAPPLFTPSAVQGPKPMMPVQIKDV 360
Query: 361 QHQQIKETRSPVMPVQVKDAQNQLLKGSLSPVIPVQIKDVQSQPPKEALSPAIPVQIKDV 420
QHQQIKETRSPVMPVQVKDAQNQLLKGSLSPVIPVQIKDVQSQPPKEALSPAIPVQIKDV
Sbjct: 361 QHQQIKETRSPVMPVQVKDAQNQLLKGSLSPVIPVQIKDVQSQPPKEALSPAIPVQIKDV 420
Query: 421 QLQPRNEPVSIGKGVVPLPAIRPPVKVEAPAEVKEASQPVAGSSVVQCKADTSPDSLPKT 480
QLQPRNEPVSIGKGVVPLPAIRPPVKVEAPAEVKEASQPVAGSSVVQCKADTSPDSLPKT
Sbjct: 421 QLQPRNEPVSIGKGVVPLPAIRPPVKVEAPAEVKEASQPVAGSSVVQCKADTSPDSLPKT 480
Query: 481 QLKTXXXXXXXXXXXHLPVDAEEVEDIIRHLELK 514
QLKT HLPVDAEEVEDIIRHLELK
Sbjct: 481 QLKTANADNADAKDDHLPVDAEEVEDIIRHLELK 514
>Os05g0150400 Double-stranded RNA binding domain containing protein
Length = 593
Score = 234 bits (597), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 125/239 (52%), Positives = 149/239 (62%), Gaps = 24/239 (10%)
Query: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQXXXXX 60
MYKNQLQELAQRSCFNLP+Y C+REGPDHAPRFKA VNFNGE FESP F +TLR
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 61 XXXXXXXXXRRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
+RGPS SLAA++LDETG+YKNLLQE A R G LP YTT RSG GH PVFT
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120
Query: 121 CTVELAGITFTGDPXXXXXXXXXXXXXXXWSSLRQLVR-QEASSSNEP--ESNDEQEQIR 177
CTVELAG+TFTG+P WS L+QL R E SSS+ P +D+QEQI
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEPSSSSCPPDHDDDDQEQII 180
Query: 178 IARALLNY---------RLKEKMAMANNPHASPFPKKFPMQPERRTAFPQSSHSSYSKI 227
+AR L + + KEK +N P + RR ++P+S+ S Y ++
Sbjct: 181 VARTLASLNQTNGGKTPQQKEKQQSSNRPSS------------RRPSYPKSNASFYGRL 227
>Os12g0109900 Double-stranded RNA binding domain containing protein
Length = 424
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFES-PGFFTTLRQXXXX 59
++K++LQE AQ++ P Y +EGP H P FK+ V N ++S PGFF R+
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFN--RKAAEQ 90
Query: 60 XXXXXXXXXXRRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVF 119
+ + + ETG+ KNLLQE AQ++ +PSY +S G P F
Sbjct: 91 SAAEVALMEIVKSIPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-F 149
Query: 120 TCTVELAGITFTG 132
CTVE+ GI + G
Sbjct: 150 ICTVEIGGIQYIG 162
>Os11g0109900 Double-stranded RNA binding domain containing protein
Length = 473
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFES-PGFFTTLRQXXXX 59
++K++LQE AQ++ P Y +EGP H P FK+ V N ++S PGFF R+
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFN--RKAAEQ 90
Query: 60 XXXXXXXXXXRRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVF 119
+ + + ETG+ KNLLQE AQ++ +PSY +S G P F
Sbjct: 91 SAAEVALMEIVKSIPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-F 149
Query: 120 TCTVELAGITFTG 132
CTVE+ GI + G
Sbjct: 150 ICTVEIGGIQYIG 162
>Os05g0307400 Similar to Regulatory associated protein of mTOR (Raptor) (P150
target of rapamycin (TOR)-scaffold protein)
Length = 437
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQXXXXX 60
++K++LQE AQ++ P Y +EGP H P FK+ V N + S F+ +
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 XXXXXXXXXRRGPSYSLAARI--LDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPV 118
+ P+ A I + ETG+ KNLLQE AQ++ +PSY + G P
Sbjct: 95 AEVALMEIVKSIPAN---ANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP- 150
Query: 119 FTCTVELAGITFTG 132
F CTVE+ GI + G
Sbjct: 151 FLCTVEIGGIQYIG 164
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,675,258
Number of extensions: 942043
Number of successful extensions: 9797
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 9747
Number of HSP's successfully gapped: 6
Length of query: 514
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 409
Effective length of database: 11,553,331
Effective search space: 4725312379
Effective search space used: 4725312379
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)