Os11g0109900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Double-stranded RNA binding domain containing protein.
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Os11g0109900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Double-stranded RNA binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.68 | 0.347 | 9.12 | 0.246 | 0.942 | 1.06 | -0.776 | 1.24 | -0.27 | 10.5 | 19.9 | 8 | -- | -- |
| 55.88 | 0.351 | 9.14 | 0.0245 | 0.931 | 1.14 | -0.496 | -- | -0.333 | 10.5 | 19.98 | 6 | -- | -- |
| 56.6 | 0.353 | 9.13 | 0.0983 | 0.941 | 1.09 | -- | 0.533 | -0.305 | 10.5 | 19.9 | 8 | -- | -- |
| 56.88 | 0.354 | 9.15 | 0.00797 | 0.937 | 1.13 | -- | -- | -0.332 | 10.5 | 19.9 | 8 | -- | -- |
| 103.79 | 0.477 | 9.18 | -0.0813 | -- | 1.71 | -- | 0.294 | -0.415 | -- | 18.9 | 4 | -- | -- |
| 75.05 | 0.406 | 9.1 | 0.252 | 1.21 | -- | -0.287 | -- | -0.142 | 11.6 | -- | -- | -- | -- |
| 75.41 | 0.407 | 9.1 | 0.24 | 1.21 | -- | -- | -- | -0.143 | 11.6 | -- | -- | -- | -- |
| 103.69 | 0.474 | 9.19 | -0.126 | -- | 1.7 | -- | -- | -0.43 | -- | 18.99 | 2 | -- | -- |
| 56.88 | 0.353 | 9.15 | -- | 0.936 | 1.13 | -- | -- | -0.333 | 10.5 | 19.9 | 8 | -- | -- |
| 166.88 | 0.604 | 9.13 | 0.206 | -- | -- | -- | -- | -0.157 | -- | -- | -- | -- | -- |
| 76.93 | 0.41 | 9.11 | -- | 1.2 | -- | -- | -- | -0.17 | 11.6 | -- | -- | -- | -- |
| 104.11 | 0.475 | 9.19 | -- | -- | 1.67 | -- | -- | -0.411 | -- | 19.1 | 2 | -- | -- |
| 168.01 | 0.605 | 9.13 | -- | -- | -- | -- | -- | -0.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 5 | 54.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 6 | 54.57 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 7 | 54.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 8 | 54.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 12 | 54.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 13 | 54.78 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 15 | 54.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 17 | 54.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 25 | 55.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 27 | 55.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 29 | 55.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 30 | 55.18 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 39 | 55.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 43 | 55.39 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 67 | 55.60 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 70 | 55.66 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 75 | 55.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 77 | 55.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 79 | 55.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 92 | 55.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 95 | 55.83 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 98 | 55.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 102 | 55.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 129 | 56.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 143 | 56.24 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 16 |
| 181 | 56.42 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 186 | 56.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 276 | 57.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 295 | 57.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 298 | 57.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 20 |
| 348 | 57.52 | temperature | 15 | 10 | > th | dose dependent | sin | 1 | NA |
| 404 | 57.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 414 | 57.82 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 423 | 57.86 | temperature | 30 | 10 | < th | dose dependent | sin | 1 | NA |
| 449 | 57.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 560 | 58.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 576 | 58.52 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 20 |
| 602 | 58.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 614 | 58.72 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 16 |
| 651 | 58.89 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 8 |
| 786 | 59.45 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 17 |
| 827 | 59.61 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 18 |
| 835 | 59.66 | temperature | 25 | 270 | > th | dose dependent | sin | 10 | NA |
| 939 | 60.03 | temperature | 25 | 90 | < th | dose independent | rect. | 12 | 23 |