BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0109900 Os11g0109900|AK063961
(473 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G09700.1 | chr1:3137960-3140118 REVERSE LENGTH=420 222 3e-58
AT3G26932.1 | chr3:9930460-9931714 REVERSE LENGTH=360 103 2e-22
AT5G41070.1 | chr5:16438547-16439916 FORWARD LENGTH=394 102 6e-22
AT2G28380.1 | chr2:12134098-12135915 REVERSE LENGTH=435 100 2e-21
AT3G62800.1 | chr3:23225749-23227163 REVERSE LENGTH=356 91 1e-18
>AT1G09700.1 | chr1:3137960-3140118 REVERSE LENGTH=420
Length = 419
Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/181 (62%), Positives = 134/181 (74%), Gaps = 4/181 (2%)
Query: 28 VENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKA 87
V NCYVFKSRLQEYAQK L TP Y KEGPSH+ +F+STV+++ Y+SLPGFFNRKA
Sbjct: 10 VSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKA 69
Query: 88 AEQSAAEVALMEIVKSIPANANIPA-VQETGLCKNLLQEYAQKMNYAIPSYICTK--SAS 144
AEQSAAEVAL E+ KS + + V ETGLCKNLLQEYAQKMNYAIP Y C K +
Sbjct: 70 AEQSAAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLG 129
Query: 145 GLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGS-ANGATKYIVVPGK 203
+ F CTVEIGGI+Y GAA RTKKDAEI A RTALLAIQ ++ + AN T+ V+P +
Sbjct: 130 RVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKNNLANYNTQLTVLPCE 189
Query: 204 R 204
+
Sbjct: 190 K 190
>AT3G26932.1 | chr3:9930460-9931714 REVERSE LENGTH=360
Length = 359
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 87/154 (56%), Gaps = 2/154 (1%)
Query: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
++K++LQE AQ++ P Y +EGP H P FK++V N ++S + AE SA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 93 AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FI 150
AEVAL + P+ + V ETG+ KNLLQE A + +P Y +S G P F
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 151 CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 184
CTVE+ G+ + G +A+TKK AE AA A +++
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLR 154
>AT5G41070.1 | chr5:16438547-16439916 FORWARD LENGTH=394
Length = 393
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
++K++LQE AQ++ P Y +EGP H P FK++V N ++S + AE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 93 AEVALMEIVKSIPANA-NIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FI 150
AEV+L + +P+ + + ETG+ KNLLQE A + +P Y +S S P F
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 151 CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS 187
CTVE+ G+ + G +A+TKK AE AA A +++ S
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKMS 157
>AT2G28380.1 | chr2:12134098-12135915 REVERSE LENGTH=435
Length = 434
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 87/154 (56%), Gaps = 2/154 (1%)
Query: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
++K++LQE AQ++ P Y +EGP H P FK+TV N ++S + AE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 93 AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FI 150
AEVAL + P+++ + ETG+ KNLLQE AQ++ +P Y +S G P F
Sbjct: 61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 151 CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 184
TVE+ GI + G A+ KK AE AA A +++
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLK 154
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 15/134 (11%)
Query: 19 PNGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDS 78
P+ + A ++ V+K+ LQE AQ+ G P Y TF+ G H+PVF TV + ++
Sbjct: 73 PSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFTGTVELAGITFTG 132
Query: 79 LPGFFNRKAAEQSAAEVA---LMEIVK----SIPANANIPAVQETGLCKNLLQEYAQKMN 131
P N+K AE++AA A L ++ K S+P NI +++ + + L+ N
Sbjct: 133 DPA-KNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIARALI-------N 184
Query: 132 YAIPSYICTKSASG 145
Y I I T S+S
Sbjct: 185 YRIKENIGTGSSSS 198
>AT3G62800.1 | chr3:23225749-23227163 REVERSE LENGTH=356
Length = 355
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 32 YVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQS 91
+V+K +LQ YA + L+ P Y +EGP H P F+ V ++ S F K+AE +
Sbjct: 3 HVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHA 62
Query: 92 AAEVALMEIVKSIPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FI 150
AA++A+ + P ++ KNLLQE AQK + +P Y S AP F
Sbjct: 63 AAKIAVASLTPQSPEGIDV-------AYKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115
Query: 151 CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 184
TVE G + G A+TKK AE+ AA+ A ++I+
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIK 149
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.308 0.126 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,870,604
Number of extensions: 403537
Number of successful extensions: 1325
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1311
Number of HSP's successfully gapped: 6
Length of query: 473
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 371
Effective length of database: 8,310,137
Effective search space: 3083060827
Effective search space used: 3083060827
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 113 (48.1 bits)