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Os08g0384100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Double-stranded RNA binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.6 (0.0197) R2 : 0.863
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.08 (0.0391) R2dE : 0.855 R2E : 0.855
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.181 (0.0414) R2dN8 : 0.0074 R2N8 : 0.00817
σ : 0.37
deviance : 63
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C
peak time of C : --
E
wheather : radiation
threshold : 3.082
memory length : 213
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.24 0.309 12.6 0.473 1.12 -1.32 0.533 -0.591 0.248 15.3 6.611 114 -- --
44.73 0.311 12.6 0.498 1.14 -1.28 0.748 -- 0.278 15.1 6.263 114 -- --
43.79 0.308 12.6 0.465 1.19 -1.26 -- -0.782 0.242 15.1 6.792 114 -- --
48.12 0.323 12.6 0.486 1.08 -1.36 -- -- 0.248 15.4 6.112 114 -- --
56.35 0.35 12.6 0.415 -- -2.04 -- -1.14 0.339 -- 2.797 201 -- --
65.9 0.381 12.6 0.475 2.51 -- 1.17 -- 0.316 13.9 -- -- -- --
71.17 0.395 12.6 0.511 2.51 -- -- -- 0.322 13.9 -- -- -- --
59.34 0.359 12.6 0.407 -- -2.07 -- -- 0.237 -- 3.185 210 -- --
54.2 0.343 12.6 -- 1.05 -1.39 -- -- 0.19 15.5 5.618 114 -- --
451.16 0.992 12.6 0.408 -- -- -- -- 0.265 -- -- -- -- --
78.06 0.413 12.6 -- 2.5 -- -- -- 0.265 13.9 -- -- -- --
63 0.37 12.6 -- -- -2.08 -- -- 0.181 -- 3.082 213 -- --
455.55 0.996 12.6 -- -- -- -- -- 0.219 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.20 temperature 15.0 10 > th dose dependent rect. 6 20
22 39.38 temperature 30.0 10 < th dose dependent rect. 2 19
131 43.72 radiation 10.0 90 < th dose dependent rect. 7 23
133 43.77 radiation 10.0 90 < th dose dependent rect. 9 22
146 44.15 radiation 10.0 90 < th dose dependent rect. 13 18
157 44.38 radiation 10.0 90 < th dose dependent rect. 15 23
161 44.47 temperature 30.0 270 < th dose independent rect. 24 19
171 44.56 temperature 10.0 720 > th dose dependent rect. 5 3
180 44.80 radiation 10.0 90 < th dose dependent no NA NA
186 44.85 radiation 1.0 270 < th dose dependent rect. 23 22
187 44.85 radiation 10.0 90 < th dose dependent rect. 13 23
189 44.87 temperature 10.0 90 > th dose dependent rect. 6 12
198 45.07 radiation 10.0 90 < th dose dependent rect. 15 16
202 45.13 radiation 30.0 270 < th dose dependent rect. 15 14
204 45.14 radiation 10.0 90 < th dose dependent rect. 1 22
238 45.85 temperature 25.0 90 < th dose independent rect. 2 19
241 45.90 radiation 1.0 270 < th dose independent rect. 23 22
243 45.98 radiation 20.0 270 < th dose independent rect. 15 14
254 46.08 radiation 1.0 90 < th dose independent rect. 1 22
257 46.10 temperature 30.0 90 < th dose independent rect. 11 10
267 46.31 temperature 15.0 10 > th dose dependent rect. 6 13
269 46.33 radiation 1.0 90 < th dose independent rect. 2 19
271 46.34 humidity 50.0 270 > th dose independent rect. 16 13
286 46.44 temperature 30.0 10 < th dose dependent rect. 2 14
293 46.53 temperature 30.0 90 < th dose independent rect. 17 13
299 46.63 radiation 10.0 90 < th dose dependent rect. 2 19
303 46.69 radiation 1.0 90 > th dose independent rect. 6 23
304 46.70 radiation 1.0 90 < th dose dependent sin 1 NA
305 46.72 radiation 1.0 90 > th dose independent rect. 6 13
320 46.78 temperature 30.0 90 < th dose dependent rect. 11 10
328 46.86 radiation 30.0 720 < th dose dependent rect. 16 5
348 47.06 radiation 10.0 720 < th dose dependent rect. 17 11
355 47.13 temperature 30.0 270 < th dose independent rect. 15 14
370 47.26 radiation 10.0 720 < th dose dependent rect. 17 3
385 47.38 temperature 30.0 10 < th dose independent rect. 11 10
415 47.60 temperature 30.0 30 < th dose dependent rect. 11 19
422 47.66 temperature 25.0 10 > th dose dependent rect. 21 23
441 47.80 temperature 30.0 10 < th dose dependent rect. 11 10
469 47.95 radiation 1.0 90 < th dose independent sin 1 NA
490 48.06 radiation 20.0 720 < th dose independent rect. 16 5
496 48.08 temperature 30.0 10 < th dose independent rect. 11 19
512 48.16 radiation 1.0 90 > th dose independent sin 1 NA
541 48.28 temperature 25.0 10 > th dose dependent no NA NA
576 48.42 temperature 30.0 90 < th dose independent rect. 11 19
604 48.57 radiation 1.0 720 < th dose dependent rect. 24 6
636 48.69 precipitation 0.1 720 < th dose independent rect. 12 6
637 48.69 precipitation 0.1 720 < th dose dependent rect. 12 6
693 48.88 temperature 10.0 270 > th dose independent rect. 9 11
694 48.88 atmosphere 1015.0 270 < th dose independent rect. 9 11
695 48.88 temperature 10.0 270 > th dose independent rect. 20 13
696 48.88 humidity 50.0 270 > th dose independent rect. 20 13
697 48.88 atmosphere 995.0 270 > th dose independent rect. 20 13
709 48.92 precipitation 0.1 270 < th dose independent rect. 20 13
712 48.92 precipitation 0.1 270 < th dose dependent rect. 20 13
714 48.93 temperature 10.0 270 > th dose dependent rect. 20 13
719 48.94 temperature 30.0 720 < th dose independent rect. 11 1
738 48.99 wind 9.0 270 < th dose independent rect. 20 13
749 49.00 temperature 25.0 10 > th dose dependent rect. 15 23
758 49.03 radiation 1.0 90 < th dose independent rect. 15 16
760 49.03 radiation 1.0 720 > th dose independent rect. 12 19
766 49.04 radiation 40.0 270 < th dose independent rect. 20 13
767 49.04 radiation 1.0 90 < th dose independent rect. 13 18
771 49.05 temperature 10.0 90 > th dose dependent rect. 22 13
779 49.08 radiation 1.0 90 < th dose independent rect. 11 20
785 49.09 radiation 1.0 90 < th dose independent rect. 9 22
800 49.13 radiation 10.0 43200 < th dose dependent rect. 22 5
885 49.36 humidity 50.0 720 > th dose independent rect. 17 4
889 49.37 radiation 1.0 90 < th dose independent rect. 15 22
908 49.43 radiation 1.0 90 < th dose independent rect. 15 19
909 49.43 radiation 1.0 90 < th dose independent rect. 13 21
930 49.44 radiation 1.0 90 < th dose independent rect. 13 23
935 49.45 radiation 1.0 90 > th dose independent no NA NA
986 49.45 humidity 60.0 10 > th dose dependent rect. 2 19
991 49.46 temperature 25.0 10 > th dose dependent rect. 12 23
997 49.48 radiation 1.0 90 < th dose independent no NA NA