BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0109500 Os11g0109500|AK064326
(311 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0109500 Staphylococcus nuclease (SNase-like) domain co... 523 e-149
Os01g0166100 Similar to Ca(2+)-dependent nuclease 216 2e-56
Os12g0255200 Staphylococcus nuclease (SNase-like) domain co... 201 8e-52
Os12g0109200 Similar to Ca(2+)-dependent nuclease 117 8e-27
>Os11g0109500 Staphylococcus nuclease (SNase-like) domain containing protein
Length = 311
Score = 523 bits (1346), Expect = e-149, Method: Compositional matrix adjust.
Identities = 263/311 (84%), Positives = 263/311 (84%)
Query: 1 MGNILRCFKXXXXXXXHYPYYKPTSRXXXXXXXXXXXXXXXXXXXXXXXXXXXGVTPSTV 60
MGNILRCFK HYPYYKPTSR GVTPSTV
Sbjct: 1 MGNILRCFKGDDDGGDHYPYYKPTSRPHYQPPHYHGQPAAPPAPLQQQHLGPHGVTPSTV 60
Query: 61 GVAALAHDLLNFESTSMVPDGLSQHVVSSRKAQVKWYQKLLEAYXXXXXXXXXXXXXXQL 120
GVAALAHDLLNFESTSMVPDGLSQHVVSSRKAQVKWYQKLLEAY QL
Sbjct: 61 GVAALAHDLLNFESTSMVPDGLSQHVVSSRKAQVKWYQKLLEAYKNTTPPPKTPANAAQL 120
Query: 121 IARALNMIQRADLEGILEFYNLPIPSLPTASSNYQPSLLPEGVQFVLNTLPVYDKCIGDG 180
IARALNMIQRADLEGILEFYNLPIPSLPTASSNYQPSLLPEGVQFVLNTLPVYDKCIGDG
Sbjct: 121 IARALNMIQRADLEGILEFYNLPIPSLPTASSNYQPSLLPEGVQFVLNTLPVYDKCIGDG 180
Query: 181 DGFTAYVPTTDPRESANVPLEVHELVIARTQARKCRDYQSADALLSSLDEAGYKIISCSD 240
DGFTAYVPTTDPRESANVPLEVHELVIARTQARKCRDYQSADALLSSLDEAGYKIISCSD
Sbjct: 181 DGFTAYVPTTDPRESANVPLEVHELVIARTQARKCRDYQSADALLSSLDEAGYKIISCSD 240
Query: 241 DEVLARKYRIRMRGIDAPELKMPYGKESRTALVKLIGGKSVKIYVYDLDQVCKMGERGKS 300
DEVLARKYRIRMRGIDAPELKMPYGKESRTALVKLIGGKSVKIYVYDLDQVCKMGERGKS
Sbjct: 241 DEVLARKYRIRMRGIDAPELKMPYGKESRTALVKLIGGKSVKIYVYDLDQVCKMGERGKS 300
Query: 301 CKPRALGVRES 311
CKPRALGVRES
Sbjct: 301 CKPRALGVRES 311
>Os01g0166100 Similar to Ca(2+)-dependent nuclease
Length = 331
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/234 (49%), Positives = 153/234 (65%), Gaps = 7/234 (2%)
Query: 62 VAALAHDLLNFESTSMVPDGLSQHVVSSRKAQVKWYQKLLEAYXXXXXXXXXXXXXXQLI 121
VAAL D+ FE+TS VPDGLS+HVVSS+KAQ WY+KL+ + +L+
Sbjct: 28 VAALGRDIQQFEATSQVPDGLSRHVVSSKKAQANWYKKLIVTWKKARPTPRTPEEAARLV 87
Query: 122 ARALNMIQRADLEGILEFYNLPIP----SLPTASSNYQPSLLPEGVQFVLNTLPVYDKCI 177
L Q+AD+EG L FY LPIP S P + + P P+G +F L+TLPV K +
Sbjct: 88 VTTLKNHQKADVEGFLVFYGLPIPNAAASTPAPHTAHVPK--PQGCKFELHTLPVDAKAV 145
Query: 178 GDGDGFTAYVPTTDPRESANVPLEVHELVIARTQARKCRDYQSADALLSSLDEAGYKII- 236
DGD T Y+ T DPRES NVP E+ + RT+AR RDYQ AD L + +AGY+ +
Sbjct: 146 ADGDTITVYIDTADPRESGNVPREIQKAAAERTRARAARDYQKADGLQKMIADAGYRQVP 205
Query: 237 SCSDDEVLARKYRIRMRGIDAPELKMPYGKESRTALVKLIGGKSVKIYVYDLDQ 290
+ +EVLA+KYRIR+RGIDAPE MPYGKE++ AL+K++ GKS+K+YVYD D+
Sbjct: 206 NARGEEVLAKKYRIRLRGIDAPESAMPYGKEAKEALLKMVQGKSLKVYVYDEDR 259
>Os12g0255200 Staphylococcus nuclease (SNase-like) domain containing protein
Length = 495
Score = 201 bits (510), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 120/249 (48%), Positives = 147/249 (59%), Gaps = 20/249 (8%)
Query: 55 VTPST-------VGVAALAHDLLNFESTSMVPDGLSQHVVSSRKAQVKWYQKLLEAYXXX 107
VTP T GVAAL DL++F T VP+GL+QHV S +AQV WY+KLL AY
Sbjct: 177 VTPQTKRSPRPPSGVAALERDLVDFTRTFEVPEGLAQHVTSPMQAQVTWYRKLLAAYKDI 236
Query: 108 XXXXXXXXXXXQLIARALNMIQRADLEGILEFYNLPIPSLPTASSNYQPSLLPEGVQFVL 167
L+A L I+R +LEGIL FY PIP++ +S PS +P+GV FVL
Sbjct: 237 KYPPKESADAAVLVAATLRGIERTNLEGILAFYGFPIPTISKEASENHPSSIPKGVLFVL 296
Query: 168 NTLPVYDKCIGDGDGFTAYVPTTDPRESANVPLEVHELVIARTQAR-----KCRDYQSAD 222
TLPV KCI DGDGFTAYV T D P+E+ + A Q+R K D +AD
Sbjct: 297 KTLPVNAKCIVDGDGFTAYVDTLD-------PIELRQDCNASCQSRNSKKQKLWDKTAAD 349
Query: 223 ALLSSLDEAGYKIISCSDDEVLARKYRIRMRGIDAPELKMPYGKESRTALVKLIGGKSVK 282
L SL+ G K + E+LARKY IR+RGIDAPE+ M YGKES+ ALVKLI K V
Sbjct: 350 -LQISLENTGQKKMFFGGREILARKYEIRLRGIDAPEIGMQYGKESQDALVKLIARKCVT 408
Query: 283 IYVYDLDQV 291
++VY DQ
Sbjct: 409 LHVYGQDQF 417
>Os12g0109200 Similar to Ca(2+)-dependent nuclease
Length = 128
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/96 (64%), Positives = 62/96 (64%)
Query: 1 MGNILRCFKXXXXXXXHYPYYKPTSRXXXXXXXXXXXXXXXXXXXXXXXXXXXGVTPSTV 60
MGNILRCFK HYPYYKPTSR GVTPSTV
Sbjct: 1 MGNILRCFKGDDDGGDHYPYYKPTSRPHYQPPHYHGQPAAPPAPPQQQPLGPHGVTPSTV 60
Query: 61 GVAALAHDLLNFESTSMVPDGLSQHVVSSRKAQVKW 96
GVAALAHDLLNFESTSMVPDGLSQHVVSSRKAQVKW
Sbjct: 61 GVAALAHDLLNFESTSMVPDGLSQHVVSSRKAQVKW 96
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,023,168
Number of extensions: 342618
Number of successful extensions: 686
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 680
Number of HSP's successfully gapped: 4
Length of query: 311
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 210
Effective length of database: 11,762,187
Effective search space: 2470059270
Effective search space used: 2470059270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)